EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0030399 (Gene tree)
Gene ID: -
Gene Symbol: Msi1
Alias: Msi1|Msi1h|Musahi1|m-Msi-1
Full Name: musashi RNA-binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 29003 bases
Position: chr5:122864622-122893624
Accession: 107376
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0074168	RRM_1	PF00076.22	6.9e-33	1	2
MGP_C57BL6NJ_P0074168	RRM_1	PF00076.22	6.9e-33	2	2
MGP_C57BL6NJ_P0074169	RRM_1	PF00076.22	1.6e-28	1	2
MGP_C57BL6NJ_P0074169	RRM_1	PF00076.22	1.6e-28	2	2
MGP_C57BL6NJ_P0074173	RRM_1	PF00076.22	1.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0074174	-	599	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074168	-	2844	-	MGP_C57BL6NJ_P0074168	362 (aa)	-	-
MGP_C57BL6NJ_T0074169	-	807	-	MGP_C57BL6NJ_P0074169	268 (aa)	-	-
MGP_C57BL6NJ_T0074167	-	2626	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074173	-	726	-	MGP_C57BL6NJ_P0074173	196 (aa)	-	-
MGP_C57BL6NJ_T0074172	-	581	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074171	-	806	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074170	-	367	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0030399's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0030399's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0030399	Msi1	99	75.665	MGP_C57BL6NJ_G0019317	Msi2	100	90.323
MGP_C57BL6NJ_G0030399	Msi1	51	38.983	MGP_C57BL6NJ_G0017880	Cirbp	87	40.351
MGP_C57BL6NJ_G0030399	Msi1	61	51.064	MGP_C57BL6NJ_G0027375	Rbm38	66	46.809
MGP_C57BL6NJ_G0030399	Msi1	58	48.052	MGP_C57BL6NJ_G0030213	Hnrnpdl	75	39.676
MGP_C57BL6NJ_G0030399	Msi1	56	41.379	MGP_C57BL6NJ_G0033576	Tial1	69	31.469
MGP_C57BL6NJ_G0030399	Msi1	58	48.052	MGP_C57BL6NJ_G0018659	Hnrnpab	79	40.800
MGP_C57BL6NJ_G0030399	Msi1	62	34.021	MGP_C57BL6NJ_G0029559	Tardbp	79	34.021
MGP_C57BL6NJ_G0030399	Msi1	57	42.949	MGP_C57BL6NJ_G0021011	Hnrnpa0	59	43.646
MGP_C57BL6NJ_G0030399	Msi1	58	43.902	MGP_C57BL6NJ_G0022850	Hnrnpa1	61	39.080
MGP_C57BL6NJ_G0030399	Msi1	88	42.308	MGP_C57BL6NJ_G0017886	Dazap1	98	44.311
MGP_C57BL6NJ_G0030399	Msi1	61	43.750	MGP_C57BL6NJ_G0031170	Hnrnpa2b1	91	41.379
MGP_C57BL6NJ_G0030399	Msi1	59	49.485	MGP_C57BL6NJ_G0030211	Hnrnpd	100	68.000
MGP_C57BL6NJ_G0030399	Msi1	59	37.500	MGP_C57BL6NJ_G0026275	Hnrnpa3	70	36.364