EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0030529 (Gene tree)
Gene ID: -
Gene Symbol: Ddx55
Alias: 2810021H22Rik|Kiaa1595|mKIAA1595
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 55
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 16436 bases
Position: chr5:133369879-133386314
Accession: 1915098
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0074947	ResIII	PF04851.15	5.5e-07	1	1
MGP_C57BL6NJ_P0074947	DEAD	PF00270.29	1e-41	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0074948	-	443	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074949	-	475	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074951	-	824	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074950	-	1430	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0074946	-	3514	-	MGP_C57BL6NJ_P0074946	135 (aa)	-	Q6ZPL9
MGP_C57BL6NJ_T0074947	-	2781	-	MGP_C57BL6NJ_P0074947	615 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0030529's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0030529's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0030529	Ddx55	72	31.721	MGP_C57BL6NJ_G0025950	Ddx31	74	31.721
MGP_C57BL6NJ_G0030529	Ddx55	57	35.734	MGP_C57BL6NJ_G0020986	Ddx41	55	35.734
MGP_C57BL6NJ_G0030529	Ddx55	56	36.261	MGP_C57BL6NJ_G0031854	Ddx47	81	35.977
MGP_C57BL6NJ_G0030529	Ddx55	61	30.326	MGP_C57BL6NJ_G0019255	Ddx52	62	30.326
MGP_C57BL6NJ_G0030529	Ddx55	58	30.556	MGP_C57BL6NJ_G0018937	Eif4a1	81	31.267
MGP_C57BL6NJ_G0030529	Ddx55	56	31.232	MGP_C57BL6NJ_G0016945	Ddx59	54	31.232
MGP_C57BL6NJ_G0030529	Ddx55	57	32.778	MGP_C57BL6NJ_G0022487	Ddx17	53	32.778
MGP_C57BL6NJ_G0030529	Ddx55	56	33.333	MGP_C57BL6NJ_G0034195	Ddx49	70	33.333
MGP_C57BL6NJ_G0030529	Ddx55	68	36.893	MGP_C57BL6NJ_G0016816	Ddx18	63	37.624
MGP_C57BL6NJ_G0030529	Ddx55	57	35.040	MGP_C57BL6NJ_G0036071	Ddx3x	54	34.946
MGP_C57BL6NJ_G0030529	Ddx55	57	35.580	MGP_C57BL6NJ_G0017321	D1Pas1	54	35.580
MGP_C57BL6NJ_G0030529	Ddx55	57	30.110	MGP_C57BL6NJ_G0019705	Ddx5	56	30.110
MGP_C57BL6NJ_G0030529	Ddx55	57	32.033	MGP_C57BL6NJ_G0035558	Ddx43	53	32.033
MGP_C57BL6NJ_G0030529	Ddx55	73	38.411	MGP_C57BL6NJ_G0035299	Ddx10	50	38.411