EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0030791 (Gene tree)
Gene ID: -
Gene Symbol: Cpsf4
Alias: 30kDa|C79664|Cpsf30
Full Name: cleavage and polyadenylation specific factor 4
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 15065 bases
Position: chr5:156088328-156103392
Accession: 1861602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0076312	zf-CCCH	PF00642.24	3e-20	1	2
MGP_C57BL6NJ_P0076312	zf-CCCH	PF00642.24	3e-20	2	2
MGP_C57BL6NJ_P0076314	zf-CCCH	PF00642.24	3.1e-20	1	2
MGP_C57BL6NJ_P0076314	zf-CCCH	PF00642.24	3.1e-20	2	2
MGP_C57BL6NJ_P0076316	zf-CCCH	PF00642.24	5.9e-20	1	2
MGP_C57BL6NJ_P0076316	zf-CCCH	PF00642.24	5.9e-20	2	2
MGP_C57BL6NJ_P0076313	zf-CCCH	PF00642.24	2.4e-15	1	2
MGP_C57BL6NJ_P0076313	zf-CCCH	PF00642.24	2.4e-15	2	2
MGP_C57BL6NJ_P0076313	zf-CCHC	PF00098.23	5.6e-06	1	1
MGP_C57BL6NJ_P0076312	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_C57BL6NJ_P0076314	zf-CCHC	PF00098.23	6.7e-06	1	1
MGP_C57BL6NJ_P0076316	zf-CCHC	PF00098.23	7.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0076313	-	1606	-	MGP_C57BL6NJ_P0076313	211 (aa)	-	-
MGP_C57BL6NJ_T0076312	-	1713	XM_006504845	MGP_C57BL6NJ_P0076312	243 (aa)	XP_006504908	Q8BQZ5
MGP_C57BL6NJ_T0076315	-	1204	-	MGP_C57BL6NJ_P0076315	62 (aa)	-	-
MGP_C57BL6NJ_T0076314	-	1387	-	MGP_C57BL6NJ_P0076314	244 (aa)	-	-
MGP_C57BL6NJ_T0076317	-	2971	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0076316	-	1655	-	MGP_C57BL6NJ_P0076316	269 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0030791's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0030791's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0030791	Cpsf4	86	52.358	MGP_C57BL6NJ_G0019746	Cpsf4l	82	62.400