EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0031270 (Gene tree)
Gene ID: -
Gene Symbol: Prdm5
Alias: 4432417F03Rik|6530401I24Rik|AI197291|E130112L17Rik|PFM2
Full Name: PR domain containing 5
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 163798 bases
Position: chr6:67249208-67413005
Accession: 1918029
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	1	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	2	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	3	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	4	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	5	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	6	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	7	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	8	9
MGP_C57BL6NJ_P0078365	zf-C2H2	PF00096.26	1e-58	9	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	1	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	2	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	3	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	4	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	5	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	6	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	7	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	8	9
MGP_C57BL6NJ_P0078363	zf-C2H2	PF00096.26	1e-48	9	9
MGP_C57BL6NJ_P0078362	zf-C2H2	PF00096.26	8.2e-27	1	5
MGP_C57BL6NJ_P0078362	zf-C2H2	PF00096.26	8.2e-27	2	5
MGP_C57BL6NJ_P0078362	zf-C2H2	PF00096.26	8.2e-27	3	5
MGP_C57BL6NJ_P0078362	zf-C2H2	PF00096.26	8.2e-27	4	5
MGP_C57BL6NJ_P0078362	zf-C2H2	PF00096.26	8.2e-27	5	5
MGP_C57BL6NJ_P0078365	zf-met	PF12874.7	2.7e-20	1	3
MGP_C57BL6NJ_P0078365	zf-met	PF12874.7	2.7e-20	2	3
MGP_C57BL6NJ_P0078365	zf-met	PF12874.7	2.7e-20	3	3
MGP_C57BL6NJ_P0078363	zf-met	PF12874.7	8.9e-17	1	3
MGP_C57BL6NJ_P0078363	zf-met	PF12874.7	8.9e-17	2	3
MGP_C57BL6NJ_P0078363	zf-met	PF12874.7	8.9e-17	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0078366	-	1920	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0078364	-	4134	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0078365	-	1800	-	MGP_C57BL6NJ_P0078365	599 (aa)	-	-
MGP_C57BL6NJ_T0078362	-	984	-	MGP_C57BL6NJ_P0078362	221 (aa)	-	-
MGP_C57BL6NJ_T0078363	-	1488	-	MGP_C57BL6NJ_P0078363	415 (aa)	-	-
MGP_C57BL6NJ_T0078361	-	1938	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0031270's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0031270's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0031270	Prdm5	74	41.463	MGP_C57BL6NJ_G0030274	Gfi1	99	45.133
MGP_C57BL6NJ_G0031270	Prdm5	88	42.857	MGP_C57BL6NJ_G0018741	Zfp672	86	44.286
MGP_C57BL6NJ_G0031270	Prdm5	81	43.277	MGP_C57BL6NJ_G0021087	Rslcan18	63	43.277
MGP_C57BL6NJ_G0031270	Prdm5	83	38.926	MGP_C57BL6NJ_G0021088	Zfp759	94	38.926
MGP_C57BL6NJ_G0031270	Prdm5	70	47.414	MGP_C57BL6NJ_G0030303	4930522L14Rik	97	47.414
MGP_C57BL6NJ_G0031270	Prdm5	82	40.076	MGP_C57BL6NJ_G0034971	Zfp872	99	40.530
MGP_C57BL6NJ_G0031270	Prdm5	72	37.838	MGP_C57BL6NJ_G0033528	E430018J23Rik	71	37.838
MGP_C57BL6NJ_G0031270	Prdm5	73	40.562	MGP_C57BL6NJ_G0033526	Zfp768	53	43.307
MGP_C57BL6NJ_G0031270	Prdm5	81	36.545	MGP_C57BL6NJ_G0018791	Zfp867	95	36.545
MGP_C57BL6NJ_G0031270	Prdm5	79	40.244	MGP_C57BL6NJ_G0029938	Zbtb49	96	45.070
MGP_C57BL6NJ_G0031270	Prdm5	70	48.315	MGP_C57BL6NJ_G0023659	Zfp945	82	35.252
MGP_C57BL6NJ_G0031270	Prdm5	86	46.739	MGP_C57BL6NJ_G0025014	Zfp236	68	43.860
MGP_C57BL6NJ_G0031270	Prdm5	91	48.387	MGP_C57BL6NJ_G0032439	Zfp420	95	41.722
MGP_C57BL6NJ_G0031270	Prdm5	73	44.286	MGP_C57BL6NJ_G0032266	Zfp235	68	39.608
MGP_C57BL6NJ_G0031270	Prdm5	69	47.857	MGP_C57BL6NJ_G0032265	Zfp112	68	39.711
MGP_C57BL6NJ_G0031270	Prdm5	87	49.194	MGP_C57BL6NJ_G0032267	Zfp111	70	41.528
MGP_C57BL6NJ_G0031270	Prdm5	67	46.667	MGP_C57BL6NJ_G0032301	Zfp574	85	30.051
MGP_C57BL6NJ_G0031270	Prdm5	82	36.243	MGP_C57BL6NJ_G0021105	Zfp748	92	39.735
MGP_C57BL6NJ_G0031270	Prdm5	78	34.752	MGP_C57BL6NJ_G0034479	Zfp319	88	34.602
MGP_C57BL6NJ_G0031270	Prdm5	73	40.104	MGP_C57BL6NJ_G0032011	Zfp628	60	38.208
MGP_C57BL6NJ_G0031270	Prdm5	81	32.735	MGP_C57BL6NJ_G0032019	Zfp865	78	32.895
MGP_C57BL6NJ_G0031270	Prdm5	88	39.062	MGP_C57BL6NJ_G0022420	Zfp251	88	39.062
MGP_C57BL6NJ_G0031270	Prdm5	96	39.073	MGP_C57BL6NJ_G0023637	Zfp51	98	39.073
MGP_C57BL6NJ_G0031270	Prdm5	95	43.165	MGP_C57BL6NJ_G0023635	Zfp677	81	37.943
MGP_C57BL6NJ_G0031270	Prdm5	74	48.913	MGP_C57BL6NJ_G0032271	Zfp94	77	38.489
MGP_C57BL6NJ_G0031270	Prdm5	68	47.826	MGP_C57BL6NJ_G0032270	Zfp61	53	41.525
MGP_C57BL6NJ_G0031270	Prdm5	68	48.544	MGP_C57BL6NJ_G0034720	Snai3	55	42.336
MGP_C57BL6NJ_G0031270	Prdm5	79	42.941	MGP_C57BL6NJ_G0026884	Zfp661	65	42.941
MGP_C57BL6NJ_G0031270	Prdm5	90	35.235	MGP_C57BL6NJ_G0023666	Zscan10	79	35.235
MGP_C57BL6NJ_G0031270	Prdm5	76	49.451	MGP_C57BL6NJ_G0034908	Zfp26	70	49.451
MGP_C57BL6NJ_G0031270	Prdm5	67	50.847	MGP_C57BL6NJ_G0034637	Zfp1	67	40.167
MGP_C57BL6NJ_G0031270	Prdm5	78	38.571	MGP_C57BL6NJ_G0018644	Zfp454	68	38.571
MGP_C57BL6NJ_G0031270	Prdm5	77	38.550	MGP_C57BL6NJ_G0033529	Zfp747	69	38.550
MGP_C57BL6NJ_G0031270	Prdm5	76	39.726	MGP_C57BL6NJ_G0034261	Zfp709	88	39.726
MGP_C57BL6NJ_G0031270	Prdm5	90	42.609	MGP_C57BL6NJ_G0034262	Zfp882	94	35.714
MGP_C57BL6NJ_G0031270	Prdm5	73	46.479	MGP_C57BL6NJ_G0031616	Zfp637	83	46.479
MGP_C57BL6NJ_G0031270	Prdm5	74	34.562	MGP_C57BL6NJ_G0027353	Zfp64	69	31.561
MGP_C57BL6NJ_G0031270	Prdm5	74	47.101	MGP_C57BL6NJ_G0020666	Zkscan4	63	47.101
MGP_C57BL6NJ_G0031270	Prdm5	68	42.361	MGP_C57BL6NJ_G0031136	Repin1	91	33.016
MGP_C57BL6NJ_G0031270	Prdm5	85	36.000	MGP_C57BL6NJ_G0018653	Zfp354a	77	39.286
MGP_C57BL6NJ_G0031270	Prdm5	93	45.185	MGP_C57BL6NJ_G0027315	Zfp334	67	40.000
MGP_C57BL6NJ_G0031270	Prdm5	72	48.760	MGP_C57BL6NJ_G0032591	Zfp715	66	39.333