EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0031330 (Gene tree)
Gene ID: -
Gene Symbol: Gm5580
Alias: -
Full Name: predicted pseudogene 5580
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 5322 bases
Position: chr6:81141488-81146809
Accession: 3646594
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0078637	DEAD	PF00270.29	1.5e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0078637	-	1298	-	MGP_C57BL6NJ_P0078637	389 (aa)	-	A0A0N4SVP8

Gene Model

Click here to download MGP_C57BL6NJ_G0031330's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0031330's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0031330	Gm5580	91	96.901	MGP_C57BL6NJ_G0019870	Eif4a3	100	90.312
MGP_C57BL6NJ_G0031330	Gm5580	87	30.769	MGP_C57BL6NJ_G0031854	Ddx47	74	30.769
MGP_C57BL6NJ_G0031330	Gm5580	81	37.888	MGP_C57BL6NJ_G0034625	Ddx19a	67	37.888
MGP_C57BL6NJ_G0031330	Gm5580	78	38.511	MGP_C57BL6NJ_G0035026	Ddx25	66	38.820
MGP_C57BL6NJ_G0031330	Gm5580	81	30.746	MGP_C57BL6NJ_G0017699	Ddx50	53	30.028
MGP_C57BL6NJ_G0031330	Gm5580	81	37.423	MGP_C57BL6NJ_G0034626	Ddx19b	67	37.423
MGP_C57BL6NJ_G0031330	Gm5580	85	67.976	MGP_C57BL6NJ_G0018937	Eif4a1	75	67.976
MGP_C57BL6NJ_G0031330	Gm5580	81	30.960	MGP_C57BL6NJ_G0034195	Ddx49	67	30.960
MGP_C57BL6NJ_G0031330	Gm5580	81	37.695	MGP_C57BL6NJ_G0024038	Ddx39b	99	37.838
MGP_C57BL6NJ_G0031330	Gm5580	100	100.000	MGP_C57BL6NJ_G0031331	Gm8994	100	100.000
MGP_C57BL6NJ_G0031330	Gm5580	58	31.197	MGP_C57BL6NJ_G0018411	Ddx56	92	31.197
MGP_C57BL6NJ_G0031330	Gm5580	81	31.325	MGP_C57BL6NJ_G0020986	Ddx41	53	31.325
MGP_C57BL6NJ_G0031330	Gm5580	77	33.227	MGP_C57BL6NJ_G0019705	Ddx5	72	32.107
MGP_C57BL6NJ_G0031330	Gm5580	85	56.798	MGP_C57BL6NJ_G0023094	Eif4a2	89	56.798
MGP_C57BL6NJ_G0031330	Gm5580	81	32.087	MGP_C57BL6NJ_G0016945	Ddx59	52	32.087
MGP_C57BL6NJ_G0031330	Gm5580	81	37.383	MGP_C57BL6NJ_G0034335	Ddx39	74	42.208