EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0031411 (Gene tree)
Gene ID: -
Gene Symbol: Tia1
Alias: 2310050N03Rik|AI256674|TIA-1|Tia|mTIA-1
Full Name: cytotoxic granule-associated RNA binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 34502 bases
Position: chr6:90066103-90100604
Accession: 107914
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0079049	RRM_1	PF00076.22	4.5e-68	1	3
MGP_C57BL6NJ_P0079049	RRM_1	PF00076.22	4.5e-68	2	3
MGP_C57BL6NJ_P0079049	RRM_1	PF00076.22	4.5e-68	3	3
MGP_C57BL6NJ_P0079043	RRM_1	PF00076.22	1.9e-67	1	3
MGP_C57BL6NJ_P0079043	RRM_1	PF00076.22	1.9e-67	2	3
MGP_C57BL6NJ_P0079043	RRM_1	PF00076.22	1.9e-67	3	3
MGP_C57BL6NJ_P0079035	RRM_1	PF00076.22	2.1e-67	1	3
MGP_C57BL6NJ_P0079035	RRM_1	PF00076.22	2.1e-67	2	3
MGP_C57BL6NJ_P0079035	RRM_1	PF00076.22	2.1e-67	3	3
MGP_C57BL6NJ_P0079036	RRM_1	PF00076.22	2.1e-67	1	3
MGP_C57BL6NJ_P0079036	RRM_1	PF00076.22	2.1e-67	2	3
MGP_C57BL6NJ_P0079036	RRM_1	PF00076.22	2.1e-67	3	3
MGP_C57BL6NJ_P0079044	RRM_1	PF00076.22	2.3e-58	1	3
MGP_C57BL6NJ_P0079044	RRM_1	PF00076.22	2.3e-58	2	3
MGP_C57BL6NJ_P0079044	RRM_1	PF00076.22	2.3e-58	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0079062	-	597	-	MGP_C57BL6NJ_P0079062	105 (aa)	-	-
MGP_C57BL6NJ_T0079060	-	716	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079061	-	585	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079040	-	612	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079041	-	1203	-	MGP_C57BL6NJ_P0079041	133 (aa)	-	-
MGP_C57BL6NJ_T0079042	-	3856	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079043	-	3130	-	MGP_C57BL6NJ_P0079043	375 (aa)	-	-
MGP_C57BL6NJ_T0079044	-	1445	-	MGP_C57BL6NJ_P0079044	285 (aa)	-	-
MGP_C57BL6NJ_T0079045	-	1290	-	MGP_C57BL6NJ_P0079045	93 (aa)	-	-
MGP_C57BL6NJ_T0079046	-	797	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079047	-	4326	-	MGP_C57BL6NJ_P0079047	212 (aa)	-	-
MGP_C57BL6NJ_T0079048	-	1178	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079049	-	3108	-	MGP_C57BL6NJ_P0079049	377 (aa)	-	-
MGP_C57BL6NJ_T0079035	-	1789	XM_006505889	MGP_C57BL6NJ_P0079035	385 (aa)	XP_006505952	P52912
MGP_C57BL6NJ_T0079037	-	935	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079036	-	4477	-	MGP_C57BL6NJ_P0079036	386 (aa)	-	-
MGP_C57BL6NJ_T0079039	-	4420	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079038	-	422	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079057	-	628	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079056	-	759	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079055	-	750	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079054	-	706	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079053	-	2660	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079052	-	1892	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079051	-	823	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079050	-	864	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079059	-	2522	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079058	-	877	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0031411's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0031411's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0031411	Tia1	69	38.462	MGP_C57BL6NJ_G0030211	Hnrnpd	55	35.593
MGP_C57BL6NJ_G0031411	Tia1	98	32.895	MGP_C57BL6NJ_G0028998	Elavl4	94	35.897
MGP_C57BL6NJ_G0031411	Tia1	89	34.615	MGP_C57BL6NJ_G0028865	Elavl2	96	34.615
MGP_C57BL6NJ_G0031411	Tia1	95	33.835	MGP_C57BL6NJ_G0024778	Pabpc2	57	35.443
MGP_C57BL6NJ_G0031411	Tia1	85	36.000	MGP_C57BL6NJ_G0035394	Celf6	62	32.955
MGP_C57BL6NJ_G0031411	Tia1	88	34.568	MGP_C57BL6NJ_G0017954	Celf5	89	32.184
MGP_C57BL6NJ_G0031411	Tia1	96	36.905	MGP_C57BL6NJ_G0023550	Pabpc6	58	36.905
MGP_C57BL6NJ_G0031411	Tia1	83	35.443	MGP_C57BL6NJ_G0025747	Celf2	51	35.443
MGP_C57BL6NJ_G0031411	Tia1	95	33.333	MGP_C57BL6NJ_G0028476	-	58	34.524
MGP_C57BL6NJ_G0031411	Tia1	80	37.778	MGP_C57BL6NJ_G0017880	Cirbp	91	35.714
MGP_C57BL6NJ_G0031411	Tia1	98	31.169	MGP_C57BL6NJ_G0034964	Elavl3	91	37.179
MGP_C57BL6NJ_G0031411	Tia1	95	30.000	MGP_C57BL6NJ_G0027608	Pabpc4l	95	30.539
MGP_C57BL6NJ_G0031411	Tia1	60	31.285	MGP_C57BL6NJ_G0029292	Trnau1ap	79	30.198
MGP_C57BL6NJ_G0031411	Tia1	77	35.870	MGP_C57BL6NJ_G0028042	Rbm8a	54	35.870
MGP_C57BL6NJ_G0031411	Tia1	87	38.095	MGP_C57BL6NJ_G0027257	Pabpc1l	63	38.095
MGP_C57BL6NJ_G0031411	Tia1	85	30.000	MGP_C57BL6NJ_G0025086	Rbm4	98	30.000
MGP_C57BL6NJ_G0031411	Tia1	97	86.992	MGP_C57BL6NJ_G0033576	Tial1	100	87.440
MGP_C57BL6NJ_G0031411	Tia1	80	34.043	MGP_C57BL6NJ_G0036247	Rbmx	98	34.409
MGP_C57BL6NJ_G0031411	Tia1	87	32.911	MGP_C57BL6NJ_G0024616	Celf4	63	30.682
MGP_C57BL6NJ_G0031411	Tia1	99	41.558	MGP_C57BL6NJ_G0028025	Sf3b4	57	37.059
MGP_C57BL6NJ_G0031411	Tia1	99	31.579	MGP_C57BL6NJ_G0033826	Elavl1	95	32.298
MGP_C57BL6NJ_G0031411	Tia1	70	41.333	MGP_C57BL6NJ_G0036039	Rbm3	66	37.349
MGP_C57BL6NJ_G0031411	Tia1	93	38.667	MGP_C57BL6NJ_G0027972	Celf3	77	37.805
MGP_C57BL6NJ_G0031411	Tia1	85	30.488	MGP_C57BL6NJ_G0025085	Rbm4b	95	30.488
MGP_C57BL6NJ_G0031411	Tia1	84	34.247	MGP_C57BL6NJ_G0036541	Pabpc5	93	33.333
MGP_C57BL6NJ_G0031411	Tia1	87	38.095	MGP_C57BL6NJ_G0022203	Pabpc1	57	38.095
MGP_C57BL6NJ_G0031411	Tia1	78	36.000	MGP_C57BL6NJ_G0023141	Ncbp2	51	36.000