EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0031414 (Gene tree)
Gene ID: -
Gene Symbol: Pcbp1
Alias: WBP17|[a]CP-1|alphaCP-1|hnRNP E1
Full Name: poly(rC) binding protein 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 1830 bases
Position: chr6:90202360-90204189
Accession: 1345635
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0079071	KH_1	PF00013.29	2.7e-51	1	3
MGP_C57BL6NJ_P0079071	KH_1	PF00013.29	2.7e-51	2	3
MGP_C57BL6NJ_P0079071	KH_1	PF00013.29	2.7e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0079071	-	1830	-	MGP_C57BL6NJ_P0079071	356 (aa)	-	P60335

Gene Model

Click here to download MGP_C57BL6NJ_G0031414's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0031414's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0031414	Pcbp1	69	34.667	MGP_C57BL6NJ_G0024354	Khsrp	54	34.667
MGP_C57BL6NJ_G0031414	Pcbp1	99	68.033	MGP_C57BL6NJ_G0017785	Pcbp3	99	65.873
MGP_C57BL6NJ_G0031414	Pcbp1	70	43.243	MGP_C57BL6NJ_G0023083	Igf2bp2	69	33.696
MGP_C57BL6NJ_G0031414	Pcbp1	98	53.541	MGP_C57BL6NJ_G0035725	-	97	67.826
MGP_C57BL6NJ_G0031414	Pcbp1	66	41.558	MGP_C57BL6NJ_G0032196	Nova2	51	41.558
MGP_C57BL6NJ_G0031414	Pcbp1	60	31.169	MGP_C57BL6NJ_G0026005	Fubp3	88	32.370
MGP_C57BL6NJ_G0031414	Pcbp1	100	81.744	MGP_C57BL6NJ_G0022830	Pcbp2	100	81.744
MGP_C57BL6NJ_G0031414	Pcbp1	88	40.187	MGP_C57BL6NJ_G0021017	Hnrnpk	78	31.724
MGP_C57BL6NJ_G0031414	Pcbp1	70	40.541	MGP_C57BL6NJ_G0020103	Nova1	57	40.541