EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0031488 (Gene tree)
Gene ID: -
Gene Symbol: Lsm3
Alias: 1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2
Full Name: LSM3 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 6695 bases
Position: chr6:95533611-95540305
Accession: 1914928
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0079411	LSM	PF01423.22	8.5e-20	1	1
MGP_C57BL6NJ_P0079415	LSM	PF01423.22	8.5e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0079415	-	618	-	MGP_C57BL6NJ_P0079415	102 (aa)	-	-
MGP_C57BL6NJ_T0079414	-	504	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079413	-	2032	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079412	-	520	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0079411	-	743	-	MGP_C57BL6NJ_P0079411	102 (aa)	-	P62311

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0031488	Lsm3	74	34.667	MGP_C57BL6NJ_G0031215	Lsm5	82	34.667
MGP_C57BL6NJ_G0031488	Lsm3	77	31.707	MGP_C57BL6NJ_G0032209	Snrpd2	69	31.707