EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0031666 (Gene tree)
Gene ID: -
Gene Symbol: Apobec1
Alias: Cdar1
Full Name: apolipoprotein B mRNA editing enzyme%2C catalytic polypeptide 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 29467 bases
Position: chr6:128972272-129001738
Accession: 103298
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0080391	APOBEC_N	PF08210.11	8.4e-30	1	1
MGP_C57BL6NJ_P0080392	APOBEC_N	PF08210.11	8.4e-30	1	1
MGP_C57BL6NJ_P0080393	APOBEC_N	PF08210.11	8.4e-30	1	1
MGP_C57BL6NJ_P0080394	APOBEC_N	PF08210.11	4.2e-17	1	1
MGP_C57BL6NJ_P0080395	APOBEC_N	PF08210.11	3.1e-13	1	1
MGP_C57BL6NJ_P0080391	APOBEC_C	PF05240.14	1.8e-22	1	1
MGP_C57BL6NJ_P0080392	APOBEC_C	PF05240.14	1.8e-22	1	1
MGP_C57BL6NJ_P0080393	APOBEC_C	PF05240.14	1.8e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0080398	-	560	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0080399	-	520	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0080391	-	2265	XM_006505401	MGP_C57BL6NJ_P0080391	229 (aa)	XP_006505464	P51908
MGP_C57BL6NJ_T0080392	-	2072	-	MGP_C57BL6NJ_P0080392	229 (aa)	-	-
MGP_C57BL6NJ_T0080393	-	2127	-	MGP_C57BL6NJ_P0080393	229 (aa)	-	-
MGP_C57BL6NJ_T0080394	-	666	-	MGP_C57BL6NJ_P0080394	121 (aa)	-	-
MGP_C57BL6NJ_T0080395	-	775	-	MGP_C57BL6NJ_P0080395	113 (aa)	-	-
MGP_C57BL6NJ_T0080396	-	372	-	MGP_C57BL6NJ_P0080396	43 (aa)	-	-
MGP_C57BL6NJ_T0080397	-	360	-	MGP_C57BL6NJ_P0080397	25 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0031666's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0031666	Apobec1	56	39.706	MGP_C57BL6NJ_G0031665	Aicda	53	41.509
MGP_C57BL6NJ_G0031666	Apobec1	74	35.789	MGP_C57BL6NJ_G0022499	Apobec3	96	35.366