EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0031854 (Gene tree)
Gene ID: -
Gene Symbol: Ddx47
Alias: 4930588A18Rik|C77285
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 13472 bases
Position: chr6:143103351-143116822
Accession: 1915005
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0081101	ResIII	PF04851.15	1.1e-05	1	1
MGP_C57BL6NJ_P0081093	ResIII	PF04851.15	1.5e-05	1	1
MGP_C57BL6NJ_P0081101	DEAD	PF00270.29	1.8e-48	1	1
MGP_C57BL6NJ_P0081093	DEAD	PF00270.29	2.8e-48	1	1
MGP_C57BL6NJ_P0081100	DEAD	PF00270.29	4.3e-38	1	2
MGP_C57BL6NJ_P0081100	DEAD	PF00270.29	4.3e-38	2	2
MGP_C57BL6NJ_P0081095	DEAD	PF00270.29	1.1e-21	1	1
MGP_C57BL6NJ_P0081098	DEAD	PF00270.29	3e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0081102	-	693	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0081103	-	791	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0081100	-	1139	-	MGP_C57BL6NJ_P0081100	379 (aa)	-	-
MGP_C57BL6NJ_T0081101	-	1078	-	MGP_C57BL6NJ_P0081101	359 (aa)	-	-
MGP_C57BL6NJ_T0081098	-	551	-	MGP_C57BL6NJ_P0081098	180 (aa)	-	-
MGP_C57BL6NJ_T0081099	-	620	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0081104	-	3269	-	MGP_C57BL6NJ_P0081104	61 (aa)	-	-
MGP_C57BL6NJ_T0081094	-	435	-	MGP_C57BL6NJ_P0081094	138 (aa)	-	-
MGP_C57BL6NJ_T0081095	-	607	-	MGP_C57BL6NJ_P0081095	196 (aa)	-	-
MGP_C57BL6NJ_T0081096	-	978	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0081097	-	4006	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0081093	-	1764	-	MGP_C57BL6NJ_P0081093	455 (aa)	-	Q9CWX9

Gene Model

Click here to download MGP_C57BL6NJ_G0031854's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0031854's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0031854	Ddx47	70	49.398	MGP_C57BL6NJ_G0034568	Ddx28	72	33.079
MGP_C57BL6NJ_G0031854	Ddx47	86	33.690	MGP_C57BL6NJ_G0017321	D1Pas1	57	34.759
MGP_C57BL6NJ_G0031854	Ddx47	95	45.824	MGP_C57BL6NJ_G0034195	Ddx49	91	45.824
MGP_C57BL6NJ_G0031854	Ddx47	81	37.168	MGP_C57BL6NJ_G0019705	Ddx5	71	37.457
MGP_C57BL6NJ_G0031854	Ddx47	85	33.333	MGP_C57BL6NJ_G0020986	Ddx41	58	35.556
MGP_C57BL6NJ_G0031854	Ddx47	83	32.011	MGP_C57BL6NJ_G0019255	Ddx52	58	33.428
MGP_C57BL6NJ_G0031854	Ddx47	74	30.769	MGP_C57BL6NJ_G0031331	Gm8994	87	30.769
MGP_C57BL6NJ_G0031854	Ddx47	74	30.769	MGP_C57BL6NJ_G0031330	Gm5580	87	30.769
MGP_C57BL6NJ_G0031854	Ddx47	92	33.634	MGP_C57BL6NJ_G0023094	Eif4a2	93	33.634
MGP_C57BL6NJ_G0031854	Ddx47	91	34.218	MGP_C57BL6NJ_G0035558	Ddx43	59	35.678
MGP_C57BL6NJ_G0031854	Ddx47	93	33.760	MGP_C57BL6NJ_G0021324	Ddx4	56	34.271
MGP_C57BL6NJ_G0031854	Ddx47	96	30.749	MGP_C57BL6NJ_G0019870	Eif4a3	94	32.041
MGP_C57BL6NJ_G0031854	Ddx47	90	31.926	MGP_C57BL6NJ_G0024038	Ddx39b	99	36.486
MGP_C57BL6NJ_G0031854	Ddx47	94	30.175	MGP_C57BL6NJ_G0017699	Ddx50	61	30.676
MGP_C57BL6NJ_G0031854	Ddx47	91	31.806	MGP_C57BL6NJ_G0016945	Ddx59	60	33.602
MGP_C57BL6NJ_G0031854	Ddx47	88	35.955	MGP_C57BL6NJ_G0016816	Ddx18	55	35.955
MGP_C57BL6NJ_G0031854	Ddx47	91	30.645	MGP_C57BL6NJ_G0018937	Eif4a1	88	31.688
MGP_C57BL6NJ_G0031854	Ddx47	86	46.875	MGP_C57BL6NJ_G0019996	Ddx1	60	46.875
MGP_C57BL6NJ_G0031854	Ddx47	85	36.869	MGP_C57BL6NJ_G0022487	Ddx17	57	37.374
MGP_C57BL6NJ_G0031854	Ddx47	84	35.652	MGP_C57BL6NJ_G0025950	Ddx31	61	31.765
MGP_C57BL6NJ_G0031854	Ddx47	90	32.095	MGP_C57BL6NJ_G0034335	Ddx39	89	32.620
MGP_C57BL6NJ_G0031854	Ddx47	86	38.889	MGP_C57BL6NJ_G0018411	Ddx56	99	35.887
MGP_C57BL6NJ_G0031854	Ddx47	81	35.977	MGP_C57BL6NJ_G0030529	Ddx55	56	36.261
MGP_C57BL6NJ_G0031854	Ddx47	86	33.690	MGP_C57BL6NJ_G0036071	Ddx3x	56	34.492