EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0032276 (Gene tree)
Gene ID: -
Gene Symbol: Irgc1
Alias: F630044M05Rik|Gm1102|Gm474|Ifgge|Iigp5|Irgc|LOC210145|LOC381989
Full Name: immunity-related GTPase family%2C cinema 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 24036 bases
Position: chr7:23498072-23522107
Accession: 2685948
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0082665	MMR_HSR1	PF01926.23	6.4e-06	1	1
MGP_C57BL6NJ_P0082666	MMR_HSR1	PF01926.23	6.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0082666	-	1737	-	MGP_C57BL6NJ_P0082666	463 (aa)	-	-
MGP_C57BL6NJ_T0082667	-	383	-	MGP_C57BL6NJ_P0082667	82 (aa)	-	-
MGP_C57BL6NJ_T0082665	-	1835	XM_006539708	MGP_C57BL6NJ_P0082665	463 (aa)	XP_006539771	A0A0U1RQ16
MGP_C57BL6NJ_T0082668	-	661	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0082669	-	342	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0032276's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0032276's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0032276	Irgc1	71	30.183	MGP_C57BL6NJ_G0018601	Irgm1	76	35.169
MGP_C57BL6NJ_G0032276	Irgc1	68	41.401	MGP_C57BL6NJ_G0018606	Ifi47	75	41.401
MGP_C57BL6NJ_G0032276	Irgc1	82	33.158	MGP_C57BL6NJ_G0024873	Iigp1	90	33.158
MGP_C57BL6NJ_G0032276	Irgc1	83	34.115	MGP_C57BL6NJ_G0024872	F830016B08Rik	89	34.115
MGP_C57BL6NJ_G0032276	Irgc1	84	35.550	MGP_C57BL6NJ_G0024871	Gm4841	91	35.806
MGP_C57BL6NJ_G0032276	Irgc1	68	36.909	MGP_C57BL6NJ_G0024870	Gm4951	77	36.909
MGP_C57BL6NJ_G0032276	Irgc1	65	33.775	MGP_C57BL6NJ_G0018737	Igtp	68	33.775
MGP_C57BL6NJ_G0032276	Irgc1	63	32.423	MGP_C57BL6NJ_G0018738	Irgm2	70	32.423