EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0032439 (Gene tree)
Gene ID: -
Gene Symbol: Zfp420
Alias: B230119D13|B230312I18Rik|mszf59-1|mszf70
Full Name: zinc finger protein 420
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 17153 bases
Position: chr7:29718922-29736074
Accession: 2444666
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	1	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	2	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	3	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	4	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	5	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	6	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	7	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	8	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	9	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	10	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	11	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	12	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	13	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	14	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	15	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	16	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	17	18
MGP_C57BL6NJ_P0083314	zf-C2H2	PF00096.26	2.6e-113	18	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	1	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	2	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	3	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	4	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	5	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	6	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	7	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	8	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	9	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	10	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	11	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	12	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	13	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	14	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	15	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	16	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	17	18
MGP_C57BL6NJ_P0083317	zf-C2H2	PF00096.26	2.6e-113	18	18
MGP_C57BL6NJ_P0083314	zf-met	PF12874.7	8.4e-08	1	1
MGP_C57BL6NJ_P0083317	zf-met	PF12874.7	8.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0083315	-	689	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083314	-	2537	XM_006539873	MGP_C57BL6NJ_P0083314	578 (aa)	XP_006539936	Q7TMN8
MGP_C57BL6NJ_T0083317	-	2744	-	MGP_C57BL6NJ_P0083317	578 (aa)	-	-
MGP_C57BL6NJ_T0083316	-	2982	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083318	-	768	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0032439's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0032439's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0032439	Zfp420	99	48.187	MGP_C57BL6NJ_G0030303	4930522L14Rik	97	48.187
MGP_C57BL6NJ_G0032439	Zfp420	99	52.489	MGP_C57BL6NJ_G0027315	Zfp334	75	51.716
MGP_C57BL6NJ_G0032439	Zfp420	99	37.634	MGP_C57BL6NJ_G0032019	Zfp865	80	37.634
MGP_C57BL6NJ_G0032439	Zfp420	98	59.532	MGP_C57BL6NJ_G0018644	Zfp454	72	57.803
MGP_C57BL6NJ_G0032439	Zfp420	99	55.773	MGP_C57BL6NJ_G0034908	Zfp26	80	55.773
MGP_C57BL6NJ_G0032439	Zfp420	95	41.722	MGP_C57BL6NJ_G0031270	Prdm5	91	48.387
MGP_C57BL6NJ_G0032439	Zfp420	99	54.233	MGP_C57BL6NJ_G0034971	Zfp872	86	53.608
MGP_C57BL6NJ_G0032439	Zfp420	98	37.309	MGP_C57BL6NJ_G0034479	Zfp319	93	36.919
MGP_C57BL6NJ_G0032439	Zfp420	99	36.677	MGP_C57BL6NJ_G0032301	Zfp574	93	37.533
MGP_C57BL6NJ_G0032439	Zfp420	98	55.870	MGP_C57BL6NJ_G0021087	Rslcan18	71	55.870
MGP_C57BL6NJ_G0032439	Zfp420	99	50.185	MGP_C57BL6NJ_G0021088	Zfp759	90	50.185
MGP_C57BL6NJ_G0032439	Zfp420	97	56.897	MGP_C57BL6NJ_G0031616	Zfp637	75	54.167
MGP_C57BL6NJ_G0032439	Zfp420	95	59.426	MGP_C57BL6NJ_G0026884	Zfp661	72	59.426
MGP_C57BL6NJ_G0032439	Zfp420	98	46.711	MGP_C57BL6NJ_G0031136	Repin1	93	46.711
MGP_C57BL6NJ_G0032439	Zfp420	99	55.918	MGP_C57BL6NJ_G0018653	Zfp354a	72	56.675
MGP_C57BL6NJ_G0032439	Zfp420	98	39.286	MGP_C57BL6NJ_G0027353	Zfp64	69	36.504
MGP_C57BL6NJ_G0032439	Zfp420	98	53.074	MGP_C57BL6NJ_G0032265	Zfp112	67	53.074
MGP_C57BL6NJ_G0032439	Zfp420	99	56.553	MGP_C57BL6NJ_G0032266	Zfp235	72	56.553
MGP_C57BL6NJ_G0032439	Zfp420	98	55.274	MGP_C57BL6NJ_G0032267	Zfp111	74	55.274
MGP_C57BL6NJ_G0032439	Zfp420	99	52.209	MGP_C57BL6NJ_G0023635	Zfp677	85	52.209
MGP_C57BL6NJ_G0032439	Zfp420	98	55.128	MGP_C57BL6NJ_G0023637	Zfp51	87	55.128
MGP_C57BL6NJ_G0032439	Zfp420	95	30.691	MGP_C57BL6NJ_G0032020	-	66	31.343
MGP_C57BL6NJ_G0032439	Zfp420	99	49.905	MGP_C57BL6NJ_G0023659	Zfp945	97	50.469
MGP_C57BL6NJ_G0032439	Zfp420	99	56.115	MGP_C57BL6NJ_G0033526	Zfp768	51	56.071
MGP_C57BL6NJ_G0032439	Zfp420	99	57.095	MGP_C57BL6NJ_G0032271	Zfp94	82	57.095
MGP_C57BL6NJ_G0032439	Zfp420	98	51.882	MGP_C57BL6NJ_G0018791	Zfp867	82	51.882
MGP_C57BL6NJ_G0032439	Zfp420	99	46.512	MGP_C57BL6NJ_G0025014	Zfp236	79	46.512
MGP_C57BL6NJ_G0032439	Zfp420	97	44.706	MGP_C57BL6NJ_G0029473	Zbtb17	69	44.706
MGP_C57BL6NJ_G0032439	Zfp420	99	57.692	MGP_C57BL6NJ_G0034637	Zfp1	78	57.692
MGP_C57BL6NJ_G0032439	Zfp420	100	54.127	MGP_C57BL6NJ_G0034261	Zfp709	91	54.310
MGP_C57BL6NJ_G0032439	Zfp420	98	56.182	MGP_C57BL6NJ_G0021105	Zfp748	93	56.182
MGP_C57BL6NJ_G0032439	Zfp420	98	47.967	MGP_C57BL6NJ_G0033528	E430018J23Rik	67	47.967
MGP_C57BL6NJ_G0032439	Zfp420	97	48.428	MGP_C57BL6NJ_G0033529	Zfp747	67	48.428
MGP_C57BL6NJ_G0032439	Zfp420	99	51.052	MGP_C57BL6NJ_G0032591	Zfp715	71	51.316
MGP_C57BL6NJ_G0032439	Zfp420	98	48.744	MGP_C57BL6NJ_G0029938	Zbtb49	89	50.000
MGP_C57BL6NJ_G0032439	Zfp420	98	38.136	MGP_C57BL6NJ_G0032011	Zfp628	60	38.748
MGP_C57BL6NJ_G0032439	Zfp420	98	44.809	MGP_C57BL6NJ_G0031715	Zfp384	50	44.809
MGP_C57BL6NJ_G0032439	Zfp420	97	41.080	MGP_C57BL6NJ_G0023666	Zscan10	78	40.179
MGP_C57BL6NJ_G0032439	Zfp420	99	61.290	MGP_C57BL6NJ_G0020666	Zkscan4	81	61.290
MGP_C57BL6NJ_G0032439	Zfp420	98	50.000	MGP_C57BL6NJ_G0034262	Zfp882	85	50.000
MGP_C57BL6NJ_G0032439	Zfp420	98	49.524	MGP_C57BL6NJ_G0018741	Zfp672	89	49.524
MGP_C57BL6NJ_G0032439	Zfp420	99	60.656	MGP_C57BL6NJ_G0022420	Zfp251	78	60.656
MGP_C57BL6NJ_G0032439	Zfp420	99	56.356	MGP_C57BL6NJ_G0032270	Zfp61	59	56.356