EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0032479 (Gene tree)
Gene ID: -
Gene Symbol: U2af1l4
Alias: AA407033|AF419339|AI451269|AW553050|U2af26|auxiliary factor 26
Full Name: U2 small nuclear RNA auxiliary factor 1-like 4
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 4660 bases
Position: chr7:30520620-30525279
Accession: 2678374
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0083485	zf-CCCH	PF00642.24	3e-13	1	2
MGP_C57BL6NJ_P0083485	zf-CCCH	PF00642.24	3e-13	2	2
MGP_C57BL6NJ_P0083487	zf-CCCH	PF00642.24	3.1e-13	1	2
MGP_C57BL6NJ_P0083487	zf-CCCH	PF00642.24	3.1e-13	2	2
MGP_C57BL6NJ_P0083469	zf-CCCH	PF00642.24	4e-13	1	2
MGP_C57BL6NJ_P0083469	zf-CCCH	PF00642.24	4e-13	2	2
MGP_C57BL6NJ_P0083466	zf-CCCH	PF00642.24	4.5e-13	1	2
MGP_C57BL6NJ_P0083466	zf-CCCH	PF00642.24	4.5e-13	2	2
MGP_C57BL6NJ_P0083488	zf-CCCH	PF00642.24	6.1e-09	1	1
MGP_C57BL6NJ_P0083467	zf-CCCH	PF00642.24	1.2e-06	1	1
MGP_C57BL6NJ_P0083500	zf-CCCH	PF00642.24	6.4e-06	1	1
MGP_C57BL6NJ_P0083487	RRM_1	PF00076.22	1.2e-07	1	1
MGP_C57BL6NJ_P0083490	RRM_1	PF00076.22	1.3e-07	1	1
MGP_C57BL6NJ_P0083500	RRM_1	PF00076.22	2.9e-07	1	1
MGP_C57BL6NJ_P0083467	RRM_1	PF00076.22	3.2e-07	1	1
MGP_C57BL6NJ_P0083469	RRM_1	PF00076.22	3.5e-07	1	1
MGP_C57BL6NJ_P0083488	RRM_1	PF00076.22	3.9e-07	1	1
MGP_C57BL6NJ_P0083466	RRM_1	PF00076.22	4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0083500	-	582	-	MGP_C57BL6NJ_P0083500	193 (aa)	-	-
MGP_C57BL6NJ_T0083481	-	562	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083480	-	668	-	MGP_C57BL6NJ_P0083480	55 (aa)	-	-
MGP_C57BL6NJ_T0083483	-	2890	-	MGP_C57BL6NJ_P0083483	146 (aa)	-	-
MGP_C57BL6NJ_T0083482	-	860	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083485	-	564	-	MGP_C57BL6NJ_P0083485	187 (aa)	-	-
MGP_C57BL6NJ_T0083484	-	2721	-	MGP_C57BL6NJ_P0083484	220 (aa)	-	-
MGP_C57BL6NJ_T0083487	-	546	-	MGP_C57BL6NJ_P0083487	181 (aa)	-	-
MGP_C57BL6NJ_T0083486	-	590	-	MGP_C57BL6NJ_P0083486	102 (aa)	-	-
MGP_C57BL6NJ_T0083489	-	353	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083488	-	651	-	MGP_C57BL6NJ_P0083488	216 (aa)	-	-
MGP_C57BL6NJ_T0083463	-	747	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083467	-	781	-	MGP_C57BL6NJ_P0083467	188 (aa)	-	-
MGP_C57BL6NJ_T0083466	-	884	-	MGP_C57BL6NJ_P0083466	220 (aa)	-	-
MGP_C57BL6NJ_T0083465	-	439	-	MGP_C57BL6NJ_P0083465	37 (aa)	-	-
MGP_C57BL6NJ_T0083464	-	583	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083469	-	835	-	MGP_C57BL6NJ_P0083469	210 (aa)	-	-
MGP_C57BL6NJ_T0083468	-	715	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083492	-	519	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083493	-	399	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083490	-	405	-	MGP_C57BL6NJ_P0083490	119 (aa)	-	-
MGP_C57BL6NJ_T0083491	-	382	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083496	-	500	-	MGP_C57BL6NJ_P0083496	24 (aa)	-	-
MGP_C57BL6NJ_T0083497	-	572	-	MGP_C57BL6NJ_P0083497	52 (aa)	-	-
MGP_C57BL6NJ_T0083494	-	728	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083495	-	568	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083498	-	626	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083499	-	202	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083478	-	505	-	MGP_C57BL6NJ_P0083478	37 (aa)	-	-
MGP_C57BL6NJ_T0083479	-	629	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083474	-	883	-	MGP_C57BL6NJ_P0083474	37 (aa)	-	-
MGP_C57BL6NJ_T0083475	-	410	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083476	-	874	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083477	-	3007	-	MGP_C57BL6NJ_P0083477	220 (aa)	-	-
MGP_C57BL6NJ_T0083470	-	635	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083471	-	656	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0083472	-	502	-	MGP_C57BL6NJ_P0083472	37 (aa)	-	-
MGP_C57BL6NJ_T0083473	-	566	-	MGP_C57BL6NJ_P0083473	46 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0032479's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0032479's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0032479	U2af1l4	100	90.385	MGP_C57BL6NJ_G0023898	U2af1	82	86.935