EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0033826 (Gene tree)
Gene ID: -
Gene Symbol: Elavl1
Alias: 2410055N02Rik|Elra|HUR|HuR|Hua|W91709
Full Name: ELAV (embryonic lethal%2C abnormal vision)-like 1 (Hu antigen R)
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 43206 bases
Position: chr8:1309348-1352553
Accession: 1100851
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0088594	RRM_5	PF13893.6	2.8e-10	1	2
MGP_C57BL6NJ_P0088594	RRM_5	PF13893.6	2.8e-10	2	2
MGP_C57BL6NJ_P0088594	RRM_1	PF00076.22	1.2e-61	1	3
MGP_C57BL6NJ_P0088594	RRM_1	PF00076.22	1.2e-61	2	3
MGP_C57BL6NJ_P0088594	RRM_1	PF00076.22	1.2e-61	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0088594	-	6030	XM_006508698	MGP_C57BL6NJ_P0088594	326 (aa)	XP_006508761	P70372

Gene Model

Click here to download MGP_C57BL6NJ_G0033826's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0033826's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0033826	Elavl1	51	34.177	MGP_C57BL6NJ_G0036247	Rbmx	85	34.177
MGP_C57BL6NJ_G0033826	Elavl1	95	43.210	MGP_C57BL6NJ_G0024616	Celf4	73	36.232
MGP_C57BL6NJ_G0033826	Elavl1	95	67.692	MGP_C57BL6NJ_G0034964	Elavl3	92	68.308
MGP_C57BL6NJ_G0033826	Elavl1	94	76.375	MGP_C57BL6NJ_G0028865	Elavl2	89	76.375
MGP_C57BL6NJ_G0033826	Elavl1	74	32.000	MGP_C57BL6NJ_G0028042	Rbm8a	62	32.000
MGP_C57BL6NJ_G0033826	Elavl1	95	30.769	MGP_C57BL6NJ_G0033576	Tial1	67	30.769
MGP_C57BL6NJ_G0033826	Elavl1	96	31.792	MGP_C57BL6NJ_G0028025	Sf3b4	59	31.818
MGP_C57BL6NJ_G0033826	Elavl1	91	34.356	MGP_C57BL6NJ_G0035900	Rbms3	97	34.356
MGP_C57BL6NJ_G0033826	Elavl1	95	32.450	MGP_C57BL6NJ_G0022203	Pabpc1	57	32.450
MGP_C57BL6NJ_G0033826	Elavl1	95	32.298	MGP_C57BL6NJ_G0031411	Tia1	99	31.579
MGP_C57BL6NJ_G0033826	Elavl1	98	73.585	MGP_C57BL6NJ_G0028998	Elavl4	89	73.585
MGP_C57BL6NJ_G0033826	Elavl1	81	43.210	MGP_C57BL6NJ_G0025747	Celf2	64	43.210
MGP_C57BL6NJ_G0033826	Elavl1	91	30.464	MGP_C57BL6NJ_G0027608	Pabpc4l	94	30.464
MGP_C57BL6NJ_G0033826	Elavl1	79	41.975	MGP_C57BL6NJ_G0017954	Celf5	59	41.975
MGP_C57BL6NJ_G0033826	Elavl1	75	33.333	MGP_C57BL6NJ_G0017880	Cirbp	82	33.333
MGP_C57BL6NJ_G0033826	Elavl1	97	44.444	MGP_C57BL6NJ_G0035394	Celf6	57	44.444
MGP_C57BL6NJ_G0033826	Elavl1	95	33.553	MGP_C57BL6NJ_G0028476	-	59	33.553
MGP_C57BL6NJ_G0033826	Elavl1	95	33.621	MGP_C57BL6NJ_G0029162	Pabpc4	58	33.621
MGP_C57BL6NJ_G0033826	Elavl1	50	33.333	MGP_C57BL6NJ_G0018659	Hnrnpab	53	33.333
MGP_C57BL6NJ_G0033826	Elavl1	95	44.444	MGP_C57BL6NJ_G0027972	Celf3	98	35.632
MGP_C57BL6NJ_G0033826	Elavl1	59	31.481	MGP_C57BL6NJ_G0029559	Tardbp	72	38.806
MGP_C57BL6NJ_G0033826	Elavl1	83	45.679	MGP_C57BL6NJ_G0026558	Celf1	61	45.679