EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0034315 (Gene tree)
Gene ID: -
Gene Symbol: Smarca5
Alias: 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 5
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 44936 bases
Position: chr8:84565721-84610656
Accession: 1935129
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0090079	ResIII	PF04851.15	9.9e-11	1	1
MGP_C57BL6NJ_P0090079	DEAD	PF00270.29	3.1e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0090079	-	6070	-	MGP_C57BL6NJ_P0090079	1051 (aa)	-	Q91ZW3
MGP_C57BL6NJ_T0090081	-	503	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0090080	-	3249	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0090083	-	701	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0090084	-	722	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0090082	-	334	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0034315	Smarca5	55	42.424	MGP_C57BL6NJ_G0028059	Chd1l	64	42.568
MGP_C57BL6NJ_G0034315	Smarca5	93	84.280	MGP_C57BL6NJ_G0036182	Smarca1	93	84.280