EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0034335 (Gene tree)
Gene ID: -
Gene Symbol: Ddx39
Alias: 2610307C23Rik|BAT1|DDXL|Ddx39a|URH49
Full Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 11712 bases
Position: chr8:87778979-87790690
Accession: 1915528
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0090136	ResIII	PF04851.15	3.1e-05	1	1
MGP_C57BL6NJ_P0090139	ResIII	PF04851.15	3.1e-05	1	1
MGP_C57BL6NJ_P0090140	ResIII	PF04851.15	3.1e-05	1	1
MGP_C57BL6NJ_P0090136	DEAD	PF00270.29	4.1e-38	1	1
MGP_C57BL6NJ_P0090139	DEAD	PF00270.29	4.1e-38	1	1
MGP_C57BL6NJ_P0090140	DEAD	PF00270.29	4.1e-38	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0090140	-	1794	-	MGP_C57BL6NJ_P0090140	427 (aa)	-	-
MGP_C57BL6NJ_T0090141	-	754	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0090139	-	3836	-	MGP_C57BL6NJ_P0090139	427 (aa)	-	-
MGP_C57BL6NJ_T0090138	-	1551	-	MGP_C57BL6NJ_P0090138	208 (aa)	-	-
MGP_C57BL6NJ_T0090137	-	1927	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0090136	-	1656	XM_006531332	MGP_C57BL6NJ_P0090136	427 (aa)	XP_006531395	Q8VDW0

Gene Model

Click here to download MGP_C57BL6NJ_G0034335's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0034335's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0034335	Ddx39	90	32.071	MGP_C57BL6NJ_G0034626	Ddx19b	81	32.071
MGP_C57BL6NJ_G0034335	Ddx39	90	31.807	MGP_C57BL6NJ_G0034625	Ddx19a	81	31.807
MGP_C57BL6NJ_G0034335	Ddx39	90	34.074	MGP_C57BL6NJ_G0028134	Ddx20	50	34.140
MGP_C57BL6NJ_G0034335	Ddx39	90	30.392	MGP_C57BL6NJ_G0017321	D1Pas1	57	31.565
MGP_C57BL6NJ_G0034335	Ddx39	89	32.620	MGP_C57BL6NJ_G0031854	Ddx47	90	32.095
MGP_C57BL6NJ_G0034335	Ddx39	86	37.197	MGP_C57BL6NJ_G0019870	Eif4a3	89	37.197
MGP_C57BL6NJ_G0034335	Ddx39	90	30.392	MGP_C57BL6NJ_G0036071	Ddx3x	56	31.565
MGP_C57BL6NJ_G0034335	Ddx39	87	33.156	MGP_C57BL6NJ_G0034195	Ddx49	78	33.156
MGP_C57BL6NJ_G0034335	Ddx39	74	34.969	MGP_C57BL6NJ_G0018411	Ddx56	61	32.051
MGP_C57BL6NJ_G0034335	Ddx39	74	42.208	MGP_C57BL6NJ_G0031330	Gm5580	81	37.383
MGP_C57BL6NJ_G0034335	Ddx39	74	42.208	MGP_C57BL6NJ_G0031331	Gm8994	85	35.714
MGP_C57BL6NJ_G0034335	Ddx39	100	90.888	MGP_C57BL6NJ_G0024038	Ddx39b	100	90.888
MGP_C57BL6NJ_G0034335	Ddx39	85	31.183	MGP_C57BL6NJ_G0035026	Ddx25	81	31.328
MGP_C57BL6NJ_G0034335	Ddx39	86	34.688	MGP_C57BL6NJ_G0023094	Eif4a2	88	34.688
MGP_C57BL6NJ_G0034335	Ddx39	84	39.655	MGP_C57BL6NJ_G0018937	Eif4a1	83	36.612