EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0034964 (Gene tree)
Gene ID: -
Gene Symbol: Elavl3
Alias: 2600009P04Rik|Huc|PLE21|mHuC
Full Name: ELAV (embryonic lethal%2C abnormal vision%2C Drosophila)-like 3 (Hu antigen C)
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 60099 bases
Position: chr9:20050161-20110259
Accession: 109157
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0092008	RRM_5	PF13893.6	4.2e-13	1	2
MGP_C57BL6NJ_P0092008	RRM_5	PF13893.6	4.2e-13	2	2
MGP_C57BL6NJ_P0092008	RRM_1	PF00076.22	5.4e-64	1	3
MGP_C57BL6NJ_P0092008	RRM_1	PF00076.22	5.4e-64	2	3
MGP_C57BL6NJ_P0092008	RRM_1	PF00076.22	5.4e-64	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0092008	-	5000	-	MGP_C57BL6NJ_P0092008	367 (aa)	-	-
MGP_C57BL6NJ_T0092007	-	4536	XM_006510021	MGP_C57BL6NJ_P0092007	352 (aa)	XP_006510084	Q60900

Gene Model

Click here to download MGP_C57BL6NJ_G0034964's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0034964's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0034964	Elavl3	72	33.708	MGP_C57BL6NJ_G0036247	Rbmx	86	33.708
MGP_C57BL6NJ_G0034964	Elavl3	97	32.447	MGP_C57BL6NJ_G0028025	Sf3b4	59	35.616
MGP_C57BL6NJ_G0034964	Elavl3	96	34.234	MGP_C57BL6NJ_G0027972	Celf3	98	35.632
MGP_C57BL6NJ_G0034964	Elavl3	91	34.940	MGP_C57BL6NJ_G0024778	Pabpc2	61	34.940
MGP_C57BL6NJ_G0034964	Elavl3	100	81.111	MGP_C57BL6NJ_G0028865	Elavl2	100	80.332
MGP_C57BL6NJ_G0034964	Elavl3	91	36.145	MGP_C57BL6NJ_G0027608	Pabpc4l	96	36.145
MGP_C57BL6NJ_G0034964	Elavl3	76	40.741	MGP_C57BL6NJ_G0025747	Celf2	82	34.667
MGP_C57BL6NJ_G0034964	Elavl3	65	36.207	MGP_C57BL6NJ_G0026182	Rbms1	51	33.645
MGP_C57BL6NJ_G0034964	Elavl3	78	38.272	MGP_C57BL6NJ_G0017954	Celf5	91	31.765
MGP_C57BL6NJ_G0034964	Elavl3	73	39.506	MGP_C57BL6NJ_G0024616	Celf4	67	39.744
MGP_C57BL6NJ_G0034964	Elavl3	65	37.500	MGP_C57BL6NJ_G0017880	Cirbp	79	37.500
MGP_C57BL6NJ_G0034964	Elavl3	92	68.308	MGP_C57BL6NJ_G0033826	Elavl1	95	67.692
MGP_C57BL6NJ_G0034964	Elavl3	93	36.145	MGP_C57BL6NJ_G0023550	Pabpc6	61	36.145
MGP_C57BL6NJ_G0034964	Elavl3	84	41.975	MGP_C57BL6NJ_G0035394	Celf6	57	42.308
MGP_C57BL6NJ_G0034964	Elavl3	91	37.179	MGP_C57BL6NJ_G0033576	Tial1	73	37.179
MGP_C57BL6NJ_G0034964	Elavl3	65	37.931	MGP_C57BL6NJ_G0035900	Rbms3	80	36.667
MGP_C57BL6NJ_G0034964	Elavl3	100	82.271	MGP_C57BL6NJ_G0028998	Elavl4	98	81.994
MGP_C57BL6NJ_G0034964	Elavl3	74	42.391	MGP_C57BL6NJ_G0026558	Celf1	57	43.590
MGP_C57BL6NJ_G0034964	Elavl3	93	33.735	MGP_C57BL6NJ_G0028476	-	60	30.719
MGP_C57BL6NJ_G0034964	Elavl3	93	33.735	MGP_C57BL6NJ_G0029162	Pabpc4	60	31.034
MGP_C57BL6NJ_G0034964	Elavl3	91	37.179	MGP_C57BL6NJ_G0031411	Tia1	98	31.169
MGP_C57BL6NJ_G0034964	Elavl3	93	36.145	MGP_C57BL6NJ_G0022203	Pabpc1	58	36.145