EuRBPDB

Description

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0093180	RRM_1	PF00076.22	2.1e-51	1	3
MGP_C57BL6NJ_P0093180	RRM_1	PF00076.22	2.1e-51	2	3
MGP_C57BL6NJ_P0093180	RRM_1	PF00076.22	2.1e-51	3	3
MGP_C57BL6NJ_P0093178	RRM_1	PF00076.22	2.6e-51	1	3
MGP_C57BL6NJ_P0093178	RRM_1	PF00076.22	2.6e-51	2	3
MGP_C57BL6NJ_P0093178	RRM_1	PF00076.22	2.6e-51	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0093177	-	3059	XM_006511540	MGP_C57BL6NJ_P0093177	182 (aa)	XP_006511603	Q7TN33
MGP_C57BL6NJ_T0093178	-	2945	-	MGP_C57BL6NJ_P0093178	481 (aa)	-	-
MGP_C57BL6NJ_T0093179	-	2896	-	MGP_C57BL6NJ_P0093179	162 (aa)	-	-
MGP_C57BL6NJ_T0093181	-	449	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0093180	-	2701	-	MGP_C57BL6NJ_P0093180	460 (aa)	-	-
MGP_C57BL6NJ_T0093182	-	591	-	-	- (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0035394	Celf6	79	31.250	MGP_C57BL6NJ_G0031170	Hnrnpa2b1	66	32.143
MGP_C57BL6NJ_G0035394	Celf6	54	31.818	MGP_C57BL6NJ_G0033576	Tial1	53	32.143
MGP_C57BL6NJ_G0035394	Celf6	91	45.567	MGP_C57BL6NJ_G0025747	Celf2	79	80.952
MGP_C57BL6NJ_G0035394	Celf6	68	37.113	MGP_C57BL6NJ_G0029162	Pabpc4	53	37.113
MGP_C57BL6NJ_G0035394	Celf6	62	32.955	MGP_C57BL6NJ_G0031411	Tia1	85	36.000
MGP_C57BL6NJ_G0035394	Celf6	100	67.200	MGP_C57BL6NJ_G0024616	Celf4	99	67.066
MGP_C57BL6NJ_G0035394	Celf6	57	44.444	MGP_C57BL6NJ_G0033826	Elavl1	97	44.444
MGP_C57BL6NJ_G0035394	Celf6	51	34.483	MGP_C57BL6NJ_G0036541	Pabpc5	63	34.483
MGP_C57BL6NJ_G0035394	Celf6	66	32.500	MGP_C57BL6NJ_G0018659	Hnrnpab	65	31.414
MGP_C57BL6NJ_G0035394	Celf6	54	35.802	MGP_C57BL6NJ_G0018243	Rbms2	50	35.802
MGP_C57BL6NJ_G0035394	Celf6	52	42.105	MGP_C57BL6NJ_G0035900	Rbms3	82	42.105
MGP_C57BL6NJ_G0035394	Celf6	62	36.082	MGP_C57BL6NJ_G0028476	-	61	36.082
MGP_C57BL6NJ_G0035394	Celf6	91	45.549	MGP_C57BL6NJ_G0026558	Celf1	98	45.135
MGP_C57BL6NJ_G0035394	Celf6	57	42.308	MGP_C57BL6NJ_G0034964	Elavl3	84	41.975
MGP_C57BL6NJ_G0035394	Celf6	89	37.037	MGP_C57BL6NJ_G0028865	Elavl2	78	40.741
MGP_C57BL6NJ_G0035394	Celf6	77	39.062	MGP_C57BL6NJ_G0023550	Pabpc6	64	39.062
MGP_C57BL6NJ_G0035394	Celf6	66	35.616	MGP_C57BL6NJ_G0027257	Pabpc1l	51	35.616
MGP_C57BL6NJ_G0035394	Celf6	95	35.802	MGP_C57BL6NJ_G0028998	Elavl4	85	40.741
MGP_C57BL6NJ_G0035394	Celf6	75	84.783	MGP_C57BL6NJ_G0017954	Celf5	93	80.645
MGP_C57BL6NJ_G0035394	Celf6	75	85.526	MGP_C57BL6NJ_G0027972	Celf3	81	87.368