EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0035602 (Gene tree)
Gene ID: -
Gene Symbol: Syncrip
Alias: 2610109K23Rik|4632417O19Rik|GRY-RBP|Hnrpq|Nsap1|Nsap1l|RRM RNA binding protein GRY-RBP|hnRNP Q|pp68
Full Name: synaptotagmin binding%2C cytoplasmic RNA interacting protein
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 41579 bases
Position: chr9:91734952-91776530
Accession: 1891690
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0094062	RRM_5	PF13893.6	2.5e-06	1	1
MGP_C57BL6NJ_P0094066	RRM_5	PF13893.6	3.2e-06	1	1
MGP_C57BL6NJ_P0094063	RRM_5	PF13893.6	4.8e-06	1	1
MGP_C57BL6NJ_P0094060	RRM_5	PF13893.6	4.8e-06	1	1
MGP_C57BL6NJ_P0094065	RRM_5	PF13893.6	6.2e-06	1	1
MGP_C57BL6NJ_P0094063	RRM_1	PF00076.22	3e-44	1	3
MGP_C57BL6NJ_P0094063	RRM_1	PF00076.22	3e-44	2	3
MGP_C57BL6NJ_P0094063	RRM_1	PF00076.22	3e-44	3	3
MGP_C57BL6NJ_P0094060	RRM_1	PF00076.22	3e-44	1	3
MGP_C57BL6NJ_P0094060	RRM_1	PF00076.22	3e-44	2	3
MGP_C57BL6NJ_P0094060	RRM_1	PF00076.22	3e-44	3	3
MGP_C57BL6NJ_P0094065	RRM_1	PF00076.22	4.7e-44	1	3
MGP_C57BL6NJ_P0094065	RRM_1	PF00076.22	4.7e-44	2	3
MGP_C57BL6NJ_P0094065	RRM_1	PF00076.22	4.7e-44	3	3
MGP_C57BL6NJ_P0094067	RRM_1	PF00076.22	7.7e-44	1	3
MGP_C57BL6NJ_P0094067	RRM_1	PF00076.22	7.7e-44	2	3
MGP_C57BL6NJ_P0094067	RRM_1	PF00076.22	7.7e-44	3	3
MGP_C57BL6NJ_P0094062	RRM_1	PF00076.22	8.4e-43	1	3
MGP_C57BL6NJ_P0094062	RRM_1	PF00076.22	8.4e-43	2	3
MGP_C57BL6NJ_P0094062	RRM_1	PF00076.22	8.4e-43	3	3
MGP_C57BL6NJ_P0094066	RRM_1	PF00076.22	1.3e-42	1	3
MGP_C57BL6NJ_P0094066	RRM_1	PF00076.22	1.3e-42	2	3
MGP_C57BL6NJ_P0094066	RRM_1	PF00076.22	1.3e-42	3	3
MGP_C57BL6NJ_P0094061	RRM_1	PF00076.22	1.4e-31	1	2
MGP_C57BL6NJ_P0094061	RRM_1	PF00076.22	1.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0094070	-	2357	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094069	-	766	-	MGP_C57BL6NJ_P0094069	196 (aa)	-	-
MGP_C57BL6NJ_T0094068	-	549	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094063	-	3344	-	MGP_C57BL6NJ_P0094063	561 (aa)	-	-
MGP_C57BL6NJ_T0094062	-	3260	-	MGP_C57BL6NJ_P0094062	527 (aa)	-	-
MGP_C57BL6NJ_T0094061	-	3176	-	MGP_C57BL6NJ_P0094061	448 (aa)	-	-
MGP_C57BL6NJ_T0094060	-	9270	XM_006511293	MGP_C57BL6NJ_P0094060	562 (aa)	XP_006511356	Q7TMK9
MGP_C57BL6NJ_T0094067	-	2169	-	MGP_C57BL6NJ_P0094067	722 (aa)	-	-
MGP_C57BL6NJ_T0094066	-	1767	-	MGP_C57BL6NJ_P0094066	588 (aa)	-	-
MGP_C57BL6NJ_T0094065	-	2768	-	MGP_C57BL6NJ_P0094065	623 (aa)	-	-
MGP_C57BL6NJ_T0094064	-	1881	-	MGP_C57BL6NJ_P0094064	67 (aa)	-	-

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0035602	Syncrip	99	81.552	MGP_C57BL6NJ_G0029389	-	99	87.156
MGP_C57BL6NJ_G0035602	Syncrip	58	52.308	MGP_C57BL6NJ_G0025454	A1cf	51	53.398
MGP_C57BL6NJ_G0035602	Syncrip	75	57.522	MGP_C57BL6NJ_G0030018	Rbm47	88	58.451
MGP_C57BL6NJ_G0035602	Syncrip	53	54.333	MGP_C57BL6NJ_G0027748	Rbm46	63	55.000