EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0035634 (Gene tree)
Gene ID: -
Gene Symbol: Xrn1
Alias: Dhm2|exo|mXrn1
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 108403 bases
Position: chr9:99897536-100005938
Accession: 891964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0094209	XRN_N	PF03159.18	3e-96	1	1
MGP_C57BL6NJ_P0094205	XRN_N	PF03159.18	1.6e-95	1	1
MGP_C57BL6NJ_P0094204	XRN_N	PF03159.18	1.6e-95	1	1
MGP_C57BL6NJ_P0094206	XRN_N	PF03159.18	9.3e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0094207	-	3357	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094206	-	357	-	MGP_C57BL6NJ_P0094206	40 (aa)	-	-
MGP_C57BL6NJ_T0094205	-	10204	-	MGP_C57BL6NJ_P0094205	1719 (aa)	-	-
MGP_C57BL6NJ_T0094204	-	5499	XM_006511153	MGP_C57BL6NJ_P0094204	1723 (aa)	XP_006511216	A0A087WNV6
MGP_C57BL6NJ_T0094209	-	3093	-	MGP_C57BL6NJ_P0094209	969 (aa)	-	-
MGP_C57BL6NJ_T0094208	-	6235	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094210	-	3615	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094211	-	844	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094212	-	3046	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0035634's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0035634's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0035634	Xrn1	90	66.667	MGP_C57BL6NJ_G0027022	Xrn2	71	39.060