EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0035725 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 12578 bases
Position: chr9:111245840-111258417
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0094662	KH_1	PF00013.29	2.7e-32	1	2
MGP_C57BL6NJ_P0094662	KH_1	PF00013.29	2.7e-32	2	2
MGP_C57BL6NJ_P0094669	KH_1	PF00013.29	1.5e-21	1	1
MGP_C57BL6NJ_P0094657	KH_1	PF00013.29	1.3e-18	1	1
MGP_C57BL6NJ_P0094664	KH_1	PF00013.29	2.3e-15	1	1
MGP_C57BL6NJ_P0094666	KH_1	PF00013.29	1.2e-13	1	1
MGP_C57BL6NJ_P0094671	KH_1	PF00013.29	5.4e-09	1	1
MGP_C57BL6NJ_P0094662	KH_2	PF07650.17	8.3e-12	1	1
MGP_C57BL6NJ_P0094657	KH_2	PF07650.17	2.3e-06	1	1
MGP_C57BL6NJ_P0094664	KH_2	PF07650.17	0.00014	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0094665	-	253	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094664	-	752	-	MGP_C57BL6NJ_P0094664	113 (aa)	-	-
MGP_C57BL6NJ_T0094667	-	846	-	MGP_C57BL6NJ_P0094667	150 (aa)	-	-
MGP_C57BL6NJ_T0094666	-	232	-	MGP_C57BL6NJ_P0094666	77 (aa)	-	-
MGP_C57BL6NJ_T0094661	-	381	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094659	-	2158	-	MGP_C57BL6NJ_P0094659	403 (aa)	-	-
MGP_C57BL6NJ_T0094663	-	477	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094662	-	893	-	MGP_C57BL6NJ_P0094662	197 (aa)	-	-
MGP_C57BL6NJ_T0094672	-	450	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094657	-	651	-	MGP_C57BL6NJ_P0094657	119 (aa)	-	-
MGP_C57BL6NJ_T0094669	-	770	-	MGP_C57BL6NJ_P0094669	168 (aa)	-	-
MGP_C57BL6NJ_T0094668	-	289	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094671	-	924	-	MGP_C57BL6NJ_P0094671	215 (aa)	-	-
MGP_C57BL6NJ_T0094658	-	389	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094670	-	314	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0094660	-	610	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0035725's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0035725's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0035725	-	51	38.462	MGP_C57BL6NJ_G0020103	Nova1	52	38.462
MGP_C57BL6NJ_G0035725	-	93	70.652	MGP_C57BL6NJ_G0017785	Pcbp3	85	69.811
MGP_C57BL6NJ_G0035725	-	76	32.323	MGP_C57BL6NJ_G0024354	Khsrp	54	34.091
MGP_C57BL6NJ_G0035725	-	85	31.731	MGP_C57BL6NJ_G0023083	Igf2bp2	62	31.111
MGP_C57BL6NJ_G0035725	-	84	32.039	MGP_C57BL6NJ_G0019386	Igf2bp1	59	30.597
MGP_C57BL6NJ_G0035725	-	76	41.538	MGP_C57BL6NJ_G0032196	Nova2	54	41.538
MGP_C57BL6NJ_G0035725	-	86	33.728	MGP_C57BL6NJ_G0021017	Hnrnpk	78	32.414
MGP_C57BL6NJ_G0035725	-	97	67.826	MGP_C57BL6NJ_G0031414	Pcbp1	98	53.541
MGP_C57BL6NJ_G0035725	-	83	36.000	MGP_C57BL6NJ_G0026005	Fubp3	70	36.000
MGP_C57BL6NJ_G0035725	-	76	33.684	MGP_C57BL6NJ_G0028402	Fubp1	72	34.524
MGP_C57BL6NJ_G0035725	-	98	66.321	MGP_C57BL6NJ_G0022830	Pcbp2	97	59.877
MGP_C57BL6NJ_G0035725	-	86	31.169	MGP_C57BL6NJ_G0032933	-	55	40.000