EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0035900 (Gene tree)
Gene ID: -
Gene Symbol: Rbms3
Alias: 6720477E09Rik|8430436O14Rik
Full Name: RNA binding motif%2C single stranded interacting protein
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 1158166 bases
Position: chr9:122396947-123555112
Accession: 2444477
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0095643	RRM_1	PF00076.22	1.6e-32	1	2
MGP_C57BL6NJ_P0095643	RRM_1	PF00076.22	1.6e-32	2	2
MGP_C57BL6NJ_P0095640	RRM_1	PF00076.22	1.2e-31	1	2
MGP_C57BL6NJ_P0095640	RRM_1	PF00076.22	1.2e-31	2	2
MGP_C57BL6NJ_P0095637	RRM_1	PF00076.22	1.4e-31	1	2
MGP_C57BL6NJ_P0095637	RRM_1	PF00076.22	1.4e-31	2	2
MGP_C57BL6NJ_P0095635	RRM_1	PF00076.22	1.5e-31	1	2
MGP_C57BL6NJ_P0095635	RRM_1	PF00076.22	1.5e-31	2	2
MGP_C57BL6NJ_P0095639	RRM_1	PF00076.22	1.5e-31	1	2
MGP_C57BL6NJ_P0095639	RRM_1	PF00076.22	1.5e-31	2	2
MGP_C57BL6NJ_P0095634	RRM_1	PF00076.22	1.7e-31	1	2
MGP_C57BL6NJ_P0095634	RRM_1	PF00076.22	1.7e-31	2	2
MGP_C57BL6NJ_P0095638	RRM_1	PF00076.22	2e-31	1	2
MGP_C57BL6NJ_P0095638	RRM_1	PF00076.22	2e-31	2	2
MGP_C57BL6NJ_P0095641	RRM_1	PF00076.22	2.8e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0095635	-	3345	-	MGP_C57BL6NJ_P0095635	414 (aa)	-	-
MGP_C57BL6NJ_T0095634	-	7933	XM_017313248	MGP_C57BL6NJ_P0095634	431 (aa)	XP_017168737	Q8BWL5
MGP_C57BL6NJ_T0095637	-	2189	-	MGP_C57BL6NJ_P0095637	402 (aa)	-	-
MGP_C57BL6NJ_T0095636	-	1656	-	MGP_C57BL6NJ_P0095636	185 (aa)	-	-
MGP_C57BL6NJ_T0095639	-	2259	-	MGP_C57BL6NJ_P0095639	415 (aa)	-	-
MGP_C57BL6NJ_T0095638	-	2151	-	MGP_C57BL6NJ_P0095638	463 (aa)	-	-
MGP_C57BL6NJ_T0095640	-	1983	-	MGP_C57BL6NJ_P0095640	386 (aa)	-	-
MGP_C57BL6NJ_T0095641	-	585	-	MGP_C57BL6NJ_P0095641	194 (aa)	-	-
MGP_C57BL6NJ_T0095642	-	2027	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0095643	-	619	-	MGP_C57BL6NJ_P0095643	206 (aa)	-	-
MGP_C57BL6NJ_T0095644	-	1438	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0095645	-	1753	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0035900's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0035900's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0035900	Rbms3	76	39.474	MGP_C57BL6NJ_G0027972	Celf3	91	39.474
MGP_C57BL6NJ_G0035900	Rbms3	93	36.134	MGP_C57BL6NJ_G0017954	Celf5	57	42.105
MGP_C57BL6NJ_G0035900	Rbms3	80	36.667	MGP_C57BL6NJ_G0034964	Elavl3	65	37.931
MGP_C57BL6NJ_G0035900	Rbms3	83	37.097	MGP_C57BL6NJ_G0028998	Elavl4	70	36.458
MGP_C57BL6NJ_G0035900	Rbms3	82	42.105	MGP_C57BL6NJ_G0035394	Celf6	52	42.105
MGP_C57BL6NJ_G0035900	Rbms3	83	37.222	MGP_C57BL6NJ_G0028865	Elavl2	69	37.209
MGP_C57BL6NJ_G0035900	Rbms3	97	34.356	MGP_C57BL6NJ_G0033826	Elavl1	91	34.356
MGP_C57BL6NJ_G0035900	Rbms3	83	80.663	MGP_C57BL6NJ_G0018243	Rbms2	86	66.758
MGP_C57BL6NJ_G0035900	Rbms3	77	30.818	MGP_C57BL6NJ_G0027257	Pabpc1l	62	30.818
MGP_C57BL6NJ_G0035900	Rbms3	68	43.421	MGP_C57BL6NJ_G0026558	Celf1	53	43.421
MGP_C57BL6NJ_G0035900	Rbms3	99	80.841	MGP_C57BL6NJ_G0026182	Rbms1	96	71.538
MGP_C57BL6NJ_G0035900	Rbms3	72	40.789	MGP_C57BL6NJ_G0024616	Celf4	68	40.789
MGP_C57BL6NJ_G0035900	Rbms3	77	33.708	MGP_C57BL6NJ_G0023550	Pabpc6	59	34.091
MGP_C57BL6NJ_G0035900	Rbms3	75	37.079	MGP_C57BL6NJ_G0025747	Celf2	77	39.474