EuRBPDB

Description

Ensembl ID: MGP_C57BL6NJ_G0036182 (Gene tree)
Gene ID: -
Gene Symbol: Smarca1
Alias: 5730494M04Rik|Snf2l
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Minus strand
Length: 80776 bases
Position: chrX:43965388-44046163
Accession: 1935127
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0096531	ResIII	PF04851.15	4.4e-12	1	1
MGP_C57BL6NJ_P0096530	ResIII	PF04851.15	1.1e-11	1	1
MGP_C57BL6NJ_P0096528	ResIII	PF04851.15	1.8e-11	1	1
MGP_C57BL6NJ_P0096527	ResIII	PF04851.15	1.9e-11	1	1
MGP_C57BL6NJ_P0096529	ResIII	PF04851.15	1.9e-11	1	1
MGP_C57BL6NJ_P0096527	DEAD	PF00270.29	1.2e-06	1	1
MGP_C57BL6NJ_P0096529	DEAD	PF00270.29	1.2e-06	1	1
MGP_C57BL6NJ_P0096528	DEAD	PF00270.29	1.3e-06	1	1
MGP_C57BL6NJ_P0096531	DEAD	PF00270.29	2.4e-06	1	1
MGP_C57BL6NJ_P0096530	DEAD	PF00270.29	3.3e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0096528	-	3991	-	MGP_C57BL6NJ_P0096528	1062 (aa)	-	-
MGP_C57BL6NJ_T0096529	-	4798	-	MGP_C57BL6NJ_P0096529	1046 (aa)	-	-
MGP_C57BL6NJ_T0096533	-	409	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0096532	-	360	-	MGP_C57BL6NJ_P0096532	117 (aa)	-	-
MGP_C57BL6NJ_T0096531	-	1965	-	MGP_C57BL6NJ_P0096531	381 (aa)	-	-
MGP_C57BL6NJ_T0096530	-	2304	-	MGP_C57BL6NJ_P0096530	768 (aa)	-	-
MGP_C57BL6NJ_T0096527	-	4024	XM_006541563	MGP_C57BL6NJ_P0096527	1046 (aa)	XP_006541626	Q6PGB8

Gene Model

Protein-Protein Interaction (PPI)

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0036182	Smarca1	68	31.488	MGP_C57BL6NJ_G0028466	Rad54b	66	31.229
MGP_C57BL6NJ_G0036182	Smarca1	93	84.280	MGP_C57BL6NJ_G0034315	Smarca5	93	84.280
MGP_C57BL6NJ_G0036182	Smarca1	71	30.174	MGP_C57BL6NJ_G0021059	Ercc6l2	82	30.353
MGP_C57BL6NJ_G0036182	Smarca1	75	42.044	MGP_C57BL6NJ_G0028059	Chd1l	62	43.419
MGP_C57BL6NJ_G0036182	Smarca1	72	45.247	MGP_C57BL6NJ_G0025511	Hells	65	47.410
MGP_C57BL6NJ_G0036182	Smarca1	61	32.031	MGP_C57BL6NJ_G0029041	Rad54l	66	33.267