EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0036250 (Gene tree)
Gene ID: -
Gene Symbol: Zic3
Alias: Bn|Ka
Full Name: zinc finger protein of the cerebellum 3
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 20730 bases
Position: chrX:54769776-54790505
Accession: 106676
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0096724	zf-C2H2	PF00096.26	8.6e-23	1	4
MGP_C57BL6NJ_P0096724	zf-C2H2	PF00096.26	8.6e-23	2	4
MGP_C57BL6NJ_P0096724	zf-C2H2	PF00096.26	8.6e-23	3	4
MGP_C57BL6NJ_P0096724	zf-C2H2	PF00096.26	8.6e-23	4	4
MGP_C57BL6NJ_P0096723	zf-C2H2	PF00096.26	3.4e-21	1	4
MGP_C57BL6NJ_P0096723	zf-C2H2	PF00096.26	3.4e-21	2	4
MGP_C57BL6NJ_P0096723	zf-C2H2	PF00096.26	3.4e-21	3	4
MGP_C57BL6NJ_P0096723	zf-C2H2	PF00096.26	3.4e-21	4	4
MGP_C57BL6NJ_P0096725	zf-C2H2	PF00096.26	2.1e-20	1	4
MGP_C57BL6NJ_P0096725	zf-C2H2	PF00096.26	2.1e-20	2	4
MGP_C57BL6NJ_P0096725	zf-C2H2	PF00096.26	2.1e-20	3	4
MGP_C57BL6NJ_P0096725	zf-C2H2	PF00096.26	2.1e-20	4	4
MGP_C57BL6NJ_P0096724	zf-met	PF12874.7	7.9e-05	1	1
MGP_C57BL6NJ_P0096725	zf-met	PF12874.7	0.00078	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0096722	-	566	XM_006527973	MGP_C57BL6NJ_P0096722	89 (aa)	XP_006528036	Q62521
MGP_C57BL6NJ_T0096723	-	3949	-	MGP_C57BL6NJ_P0096723	466 (aa)	-	-
MGP_C57BL6NJ_T0096724	-	2980	-	MGP_C57BL6NJ_P0096724	246 (aa)	-	-
MGP_C57BL6NJ_T0096725	-	1951	-	MGP_C57BL6NJ_P0096725	456 (aa)	-	-

Gene Model

Click here to download MGP_C57BL6NJ_G0036250's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0036250's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0036250	Zic3	64	33.540	MGP_C57BL6NJ_G0027353	Zfp64	56	33.540
MGP_C57BL6NJ_G0036250	Zic3	64	38.849	MGP_C57BL6NJ_G0022963	Snai2	50	38.776