EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0036272 (Gene tree)
Gene ID: -
Gene Symbol: Fmr1
Alias: FMRP|Fmr-1
Full Name: fragile X mental retardation syndrome 1
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 49411 bases
Position: chrX:66210154-66259564
Accession: 95564
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0096773	KH_1	PF00013.29	1.2e-15	1	2
MGP_C57BL6NJ_P0096773	KH_1	PF00013.29	1.2e-15	2	2
MGP_C57BL6NJ_P0096767	KH_1	PF00013.29	1.2e-15	1	2
MGP_C57BL6NJ_P0096767	KH_1	PF00013.29	1.2e-15	2	2
MGP_C57BL6NJ_P0096772	KH_1	PF00013.29	1.6e-15	1	2
MGP_C57BL6NJ_P0096772	KH_1	PF00013.29	1.6e-15	2	2
MGP_C57BL6NJ_P0096774	KH_1	PF00013.29	1.7e-15	1	2
MGP_C57BL6NJ_P0096774	KH_1	PF00013.29	1.7e-15	2	2
MGP_C57BL6NJ_P0096771	KH_1	PF00013.29	4.7e-11	1	1
MGP_C57BL6NJ_P0096772	Agenet	PF05641.12	1.1e-05	1	1
MGP_C57BL6NJ_P0096771	Agenet	PF05641.12	1.1e-05	1	1
MGP_C57BL6NJ_P0096774	Agenet	PF05641.12	1.1e-05	1	1
MGP_C57BL6NJ_P0096767	Agenet	PF05641.12	1.2e-05	1	1
MGP_C57BL6NJ_P0096773	Agenet	PF05641.12	1.2e-05	1	1
MGP_C57BL6NJ_P0096771	FXMRP1_C_core	PF12235.8	3.2e-46	1	1
MGP_C57BL6NJ_P0096774	FXMRP1_C_core	PF12235.8	3.2e-46	1	1
MGP_C57BL6NJ_P0096767	FXMRP1_C_core	PF12235.8	3.4e-46	1	1
MGP_C57BL6NJ_P0096773	FXMRP1_C_core	PF12235.8	3.4e-46	1	1
MGP_C57BL6NJ_P0096772	FXMRP1_C_core	PF12235.8	2.7e-31	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0096775	-	4005	-	MGP_C57BL6NJ_P0096775	571 (aa)	-	-
MGP_C57BL6NJ_T0096767	-	4406	XM_006527810	MGP_C57BL6NJ_P0096767	613 (aa)	XP_006527873	D3Z6U8
MGP_C57BL6NJ_T0096777	-	588	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0096776	-	1950	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0096771	-	4254	-	MGP_C57BL6NJ_P0096771	590 (aa)	-	-
MGP_C57BL6NJ_T0096770	-	2140	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0096773	-	4196	-	MGP_C57BL6NJ_P0096773	630 (aa)	-	-
MGP_C57BL6NJ_T0096772	-	4058	-	MGP_C57BL6NJ_P0096772	584 (aa)	-	-
MGP_C57BL6NJ_T0096778	-	646	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0096768	-	2817	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0096769	-	720	-	-	- (aa)	-	-
MGP_C57BL6NJ_T0096774	-	4073	-	MGP_C57BL6NJ_P0096774	592 (aa)	-	-

Gene Model

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Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0036272's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0036272	Fmr1	82	56.859	MGP_C57BL6NJ_G0018933	Fxr2	67	67.062
MGP_C57BL6NJ_G0036272	Fmr1	85	62.992	MGP_C57BL6NJ_G0027566	Fxr1	81	69.643