EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Description

Ensembl ID: MGP_C57BL6NJ_G0036541 (Gene tree)
Gene ID: -
Gene Symbol: Pabpc5
Alias: C820015E17
Full Name: poly(A) binding protein%2C cytoplasmic 5
Gene Type: protein_coding
Species: Mus_musculus_c57bl6nj
Status: putative
Strand: Plus strand
Length: 3133 bases
Position: chrX:120287900-120291032
Accession: 2136401
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_C57BL6NJ_P0097825	RRM_5	PF13893.6	7.2e-12	1	2
MGP_C57BL6NJ_P0097825	RRM_5	PF13893.6	7.2e-12	2	2
MGP_C57BL6NJ_P0097826	RRM_5	PF13893.6	7.2e-12	1	2
MGP_C57BL6NJ_P0097826	RRM_5	PF13893.6	7.2e-12	2	2
MGP_C57BL6NJ_P0097825	RRM_1	PF00076.22	1.1e-77	1	4
MGP_C57BL6NJ_P0097825	RRM_1	PF00076.22	1.1e-77	2	4
MGP_C57BL6NJ_P0097825	RRM_1	PF00076.22	1.1e-77	3	4
MGP_C57BL6NJ_P0097825	RRM_1	PF00076.22	1.1e-77	4	4
MGP_C57BL6NJ_P0097826	RRM_1	PF00076.22	1.1e-77	1	4
MGP_C57BL6NJ_P0097826	RRM_1	PF00076.22	1.1e-77	2	4
MGP_C57BL6NJ_P0097826	RRM_1	PF00076.22	1.1e-77	3	4
MGP_C57BL6NJ_P0097826	RRM_1	PF00076.22	1.1e-77	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_C57BL6NJ_T0097826	-	2243	-	MGP_C57BL6NJ_P0097826	381 (aa)	-	-
MGP_C57BL6NJ_T0097825	-	2434	-	MGP_C57BL6NJ_P0097825	381 (aa)	-	Q8C7D3

Gene Model

Click here to download MGP_C57BL6NJ_G0036541's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_C57BL6NJ_G0036541's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_C57BL6NJ_G0036541	Pabpc5	94	37.037	MGP_C57BL6NJ_G0028865	Elavl2	89	37.037
MGP_C57BL6NJ_G0036541	Pabpc5	98	40.828	MGP_C57BL6NJ_G0028025	Sf3b4	61	31.507
MGP_C57BL6NJ_G0036541	Pabpc5	96	56.944	MGP_C57BL6NJ_G0027257	Pabpc1l	67	57.022
MGP_C57BL6NJ_G0036541	Pabpc5	95	58.445	MGP_C57BL6NJ_G0023550	Pabpc6	59	58.470
MGP_C57BL6NJ_G0036541	Pabpc5	95	63.912	MGP_C57BL6NJ_G0028476	-	62	64.045
MGP_C57BL6NJ_G0036541	Pabpc5	63	34.483	MGP_C57BL6NJ_G0035394	Celf6	51	34.483
MGP_C57BL6NJ_G0036541	Pabpc5	93	33.333	MGP_C57BL6NJ_G0031411	Tia1	84	34.247
MGP_C57BL6NJ_G0036541	Pabpc5	70	35.955	MGP_C57BL6NJ_G0017954	Celf5	66	34.426
MGP_C57BL6NJ_G0036541	Pabpc5	96	61.111	MGP_C57BL6NJ_G0024778	Pabpc2	62	60.955
MGP_C57BL6NJ_G0036541	Pabpc5	94	65.432	MGP_C57BL6NJ_G0029162	Pabpc4	59	65.432
MGP_C57BL6NJ_G0036541	Pabpc5	96	57.967	MGP_C57BL6NJ_G0027608	Pabpc4l	97	57.865
MGP_C57BL6NJ_G0036541	Pabpc5	95	64.463	MGP_C57BL6NJ_G0022203	Pabpc1	58	64.607