EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0014362 (Gene tree)
Gene ID: 110292365
Gene Symbol: Ncl
Alias: B530004O11Rik|C23
Full Name: nucleolin
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 14974 bases
Position: chr1:78849383-78864356
Accession: 110292365
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0018819	RRM_1	PF00076.22	2.8e-59	1	4
MGP_CAROLIEiJ_P0018819	RRM_1	PF00076.22	2.8e-59	2	4
MGP_CAROLIEiJ_P0018819	RRM_1	PF00076.22	2.8e-59	3	4
MGP_CAROLIEiJ_P0018819	RRM_1	PF00076.22	2.8e-59	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0018821	-	601	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0018820	-	3083	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0018823	-	501	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0018822	-	1043	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0018824	-	686	-	MGP_CAROLIEiJ_P0018824	76 (aa)	-	-
MGP_CAROLIEiJ_T0018819	-	7974	-	MGP_CAROLIEiJ_P0018819	706 (aa)	XP_021015306	UPI000A3194A1

Gene Model

Click here to download MGP_CAROLIEiJ_G0014362's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0014362's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0014362	Ncl	61	83.447	ENSG00000115053	NCL	97	80.137	Homo_sapiens
MGP_CAROLIEiJ_G0014362	Ncl	53	86.544	ENSAMEG00000016289	NCL	92	77.812	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0014362	Ncl	99	64.672	ENSANAG00000024378	-	94	73.485	Aotus_nancymaae
MGP_CAROLIEiJ_G0014362	Ncl	53	86.807	ENSANAG00000035814	-	92	77.778	Aotus_nancymaae
MGP_CAROLIEiJ_G0014362	Ncl	69	81.605	ENSBTAG00000016174	NCL	92	76.992	Bos_taurus
MGP_CAROLIEiJ_G0014362	Ncl	54	83.128	ENSBTAG00000050728	-	81	83.128	Bos_taurus
MGP_CAROLIEiJ_G0014362	Ncl	89	82.381	ENSBTAG00000051320	-	83	82.160	Bos_taurus
MGP_CAROLIEiJ_G0014362	Ncl	68	83.264	ENSBTAG00000026909	-	82	83.613	Bos_taurus
MGP_CAROLIEiJ_G0014362	Ncl	53	86.807	ENSCJAG00000013538	NCL	92	77.341	Callithrix_jacchus
MGP_CAROLIEiJ_G0014362	Ncl	92	80.273	ENSCAFG00000011037	NCL	92	78.300	Canis_familiaris
MGP_CAROLIEiJ_G0014362	Ncl	84	80.033	ENSCAFG00020023145	NCL	89	77.888	Canis_lupus_dingo
MGP_CAROLIEiJ_G0014362	Ncl	92	70.287	ENSCHIG00000026149	-	93	70.890	Capra_hircus
MGP_CAROLIEiJ_G0014362	Ncl	85	73.171	ENSCHIG00000010894	-	91	75.817	Capra_hircus
MGP_CAROLIEiJ_G0014362	Ncl	62	73.318	ENSCHIG00000012143	-	92	67.278	Capra_hircus
MGP_CAROLIEiJ_G0014362	Ncl	92	87.225	ENSCHIG00000021052	-	85	87.225	Capra_hircus
MGP_CAROLIEiJ_G0014362	Ncl	92	77.156	ENSTSYG00000004355	-	92	76.818	Carlito_syrichta
MGP_CAROLIEiJ_G0014362	Ncl	95	73.368	ENSTSYG00000029779	-	98	72.526	Carlito_syrichta
MGP_CAROLIEiJ_G0014362	Ncl	90	63.551	ENSTSYG00000036886	-	91	66.820	Carlito_syrichta
MGP_CAROLIEiJ_G0014362	Ncl	53	80.739	ENSCAPG00000009405	NCL	91	72.657	Cavia_aperea
MGP_CAROLIEiJ_G0014362	Ncl	53	85.752	ENSCPOG00000001034	NCL	92	76.104	Cavia_porcellus
MGP_CAROLIEiJ_G0014362	Ncl	71	82.927	ENSCCAG00000000551	-	84	82.927	Cebus_capucinus
MGP_CAROLIEiJ_G0014362	Ncl	53	86.807	ENSCCAG00000021040	-	92	77.439	Cebus_capucinus
MGP_CAROLIEiJ_G0014362	Ncl	92	79.604	ENSCATG00000037033	NCL	92	78.539	Cercocebus_atys
MGP_CAROLIEiJ_G0014362	Ncl	92	74.394	ENSCLAG00000013080	NCL	92	74.203	Chinchilla_lanigera
MGP_CAROLIEiJ_G0014362	Ncl	53	86.579	ENSCSAG00000006660	NCL	95	88.155	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0014362	Ncl	60	70.370	ENSCHOG00000012860	NCL	89	69.425	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0014362	Ncl	92	74.273	ENSCGRG00001022350	-	95	75.039	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0014362	Ncl	92	86.810	ENSCGRG00001024315	-	91	86.810	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0014362	Ncl	85	85.318	ENSCGRG00000017894	-	88	85.366	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0014362	Ncl	92	73.620	ENSCGRG00000000507	-	93	73.611	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0014362	Ncl	92	77.761	ENSDNOG00000010783	-	92	76.399	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0014362	Ncl	100	69.986	ENSDNOG00000046347	-	99	68.583	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0014362	Ncl	53	85.979	ENSDORG00000012513	-	91	77.710	Dipodomys_ordii
MGP_CAROLIEiJ_G0014362	Ncl	51	75.616	ENSDORG00000023596	-	92	67.852	Dipodomys_ordii
MGP_CAROLIEiJ_G0014362	Ncl	53	82.888	ENSETEG00000014756	-	86	82.979	Echinops_telfairi
MGP_CAROLIEiJ_G0014362	Ncl	71	59.290	ENSETEG00000008139	-	89	59.128	Echinops_telfairi
MGP_CAROLIEiJ_G0014362	Ncl	70	54.600	ENSETEG00000008553	-	88	56.322	Echinops_telfairi
MGP_CAROLIEiJ_G0014362	Ncl	53	82.850	ENSETEG00000018937	-	85	72.431	Echinops_telfairi
MGP_CAROLIEiJ_G0014362	Ncl	89	78.261	ENSEASG00005008488	NCL	91	78.106	Equus_asinus_asinus
MGP_CAROLIEiJ_G0014362	Ncl	92	78.030	ENSECAG00000021868	NCL	92	77.879	Equus_caballus
MGP_CAROLIEiJ_G0014362	Ncl	85	75.372	ENSEEUG00000005913	NCL	85	73.719	Erinaceus_europaeus
MGP_CAROLIEiJ_G0014362	Ncl	92	79.091	ENSFCAG00000027622	NCL	92	77.576	Felis_catus
MGP_CAROLIEiJ_G0014362	Ncl	91	77.370	ENSFDAG00000014291	NCL	92	75.841	Fukomys_damarensis
MGP_CAROLIEiJ_G0014362	Ncl	61	83.900	ENSGGOG00000004300	NCL	91	86.275	Gorilla_gorilla
MGP_CAROLIEiJ_G0014362	Ncl	53	78.704	ENSHGLG00000005133	-	82	78.829	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0014362	Ncl	92	77.086	ENSHGLG00000002031	-	92	75.873	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0014362	Ncl	91	69.385	ENSHGLG00000011069	-	62	74.083	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0014362	Ncl	92	77.557	ENSHGLG00100014537	-	92	76.336	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014362	Ncl	73	78.133	ENSHGLG00100000745	-	82	78.249	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014362	Ncl	53	84.800	ENSJJAG00000016165	Ncl	91	77.846	Jaculus_jaculus
MGP_CAROLIEiJ_G0014362	Ncl	91	66.156	ENSLAFG00000013061	NCL	91	64.012	Loxodonta_africana
MGP_CAROLIEiJ_G0014362	Ncl	92	79.331	ENSMFAG00000040385	NCL	92	78.267	Macaca_fascicularis
MGP_CAROLIEiJ_G0014362	Ncl	92	79.331	ENSMMUG00000018094	NCL	92	78.267	Macaca_mulatta
MGP_CAROLIEiJ_G0014362	Ncl	74	89.091	ENSMNEG00000023839	NCL	64	86.319	Macaca_nemestrina
MGP_CAROLIEiJ_G0014362	Ncl	92	79.756	ENSMLEG00000028935	NCL	92	78.691	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0014362	Ncl	92	64.308	ENSMICG00000029975	-	87	74.468	Microcebus_murinus
MGP_CAROLIEiJ_G0014362	Ncl	92	78.387	ENSMICG00000002538	-	92	78.539	Microcebus_murinus
MGP_CAROLIEiJ_G0014362	Ncl	100	97.737	ENSMUSG00000026234	Ncl	100	97.737	Mus_musculus
MGP_CAROLIEiJ_G0014362	Ncl	92	92.130	MGP_PahariEiJ_G0027599	Ncl	92	93.056	Mus_pahari
MGP_CAROLIEiJ_G0014362	Ncl	100	97.458	MGP_SPRETEiJ_G0015164	Ncl	100	97.458	Mus_spretus
MGP_CAROLIEiJ_G0014362	Ncl	92	75.680	ENSMLUG00000014547	NCL	92	77.727	Myotis_lucifugus
MGP_CAROLIEiJ_G0014362	Ncl	52	78.075	ENSNGAG00000006188	-	54	78.342	Nannospalax_galili
MGP_CAROLIEiJ_G0014362	Ncl	92	84.195	ENSNGAG00000002454	-	91	83.714	Nannospalax_galili
MGP_CAROLIEiJ_G0014362	Ncl	85	68.624	ENSNLEG00000014107	-	85	64.415	Nomascus_leucogenys
MGP_CAROLIEiJ_G0014362	Ncl	53	82.228	ENSODEG00000003281	-	91	72.018	Octodon_degus
MGP_CAROLIEiJ_G0014362	Ncl	91	58.770	ENSODEG00000007803	-	90	57.581	Octodon_degus
MGP_CAROLIEiJ_G0014362	Ncl	61	72.644	ENSODEG00000002441	-	89	77.119	Octodon_degus
MGP_CAROLIEiJ_G0014362	Ncl	92	71.889	ENSOCUG00000004312	NCL	100	73.699	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0014362	Ncl	61	82.877	ENSOARG00000020709	-	92	74.074	Ovis_aries
MGP_CAROLIEiJ_G0014362	Ncl	62	71.429	ENSOARG00000004072	-	71	71.659	Ovis_aries
MGP_CAROLIEiJ_G0014362	Ncl	88	59.859	ENSOARG00000013270	-	100	58.904	Ovis_aries
MGP_CAROLIEiJ_G0014362	Ncl	61	83.141	ENSOARG00000013710	-	95	71.005	Ovis_aries
MGP_CAROLIEiJ_G0014362	Ncl	61	83.220	ENSPPAG00000011619	NCL	91	86.275	Pan_paniscus
MGP_CAROLIEiJ_G0014362	Ncl	92	79.059	ENSPPRG00000012603	NCL	92	77.845	Panthera_pardus
MGP_CAROLIEiJ_G0014362	Ncl	91	78.867	ENSPTIG00000010393	NCL	91	77.642	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0014362	Ncl	61	83.484	ENSPTRG00000013025	NCL	92	85.993	Pan_troglodytes
MGP_CAROLIEiJ_G0014362	Ncl	92	79.331	ENSPANG00000010292	NCL	92	78.267	Papio_anubis
MGP_CAROLIEiJ_G0014362	Ncl	92	79.666	ENSPCOG00000003051	-	91	78.756	Propithecus_coquereli
MGP_CAROLIEiJ_G0014362	Ncl	91	80.533	ENSPCOG00000004160	-	94	73.231	Propithecus_coquereli
MGP_CAROLIEiJ_G0014362	Ncl	92	80.000	ENSPVAG00000000297	NCL	92	78.626	Pteropus_vampyrus
MGP_CAROLIEiJ_G0014362	Ncl	92	91.006	ENSRNOG00000018273	Ncl	92	91.006	Rattus_norvegicus
MGP_CAROLIEiJ_G0014362	Ncl	92	76.256	ENSRBIG00000037525	-	91	74.886	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0014362	Ncl	54	87.197	ENSRBIG00000035396	-	79	85.570	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0014362	Ncl	95	74.403	ENSRROG00000036103	-	99	74.235	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0014362	Ncl	92	78.691	ENSRROG00000028756	-	91	77.356	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0014362	Ncl	61	75.854	ENSSBOG00000027549	-	91	70.732	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0014362	Ncl	53	86.544	ENSSBOG00000029193	-	92	77.121	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0014362	Ncl	92	77.628	ENSSSCG00000016275	NCL	92	78.078	Sus_scrofa
MGP_CAROLIEiJ_G0014362	Ncl	65	71.671	ENSTBEG00000002469	-	66	71.429	Tupaia_belangeri
MGP_CAROLIEiJ_G0014362	Ncl	55	74.142	ENSTBEG00000001546	-	85	69.016	Tupaia_belangeri
MGP_CAROLIEiJ_G0014362	Ncl	92	77.508	ENSTTRG00000009094	NCL	91	76.524	Tursiops_truncatus
MGP_CAROLIEiJ_G0014362	Ncl	67	86.579	ENSUAMG00000005639	NCL	88	81.941	Ursus_americanus
MGP_CAROLIEiJ_G0014362	Ncl	53	86.807	ENSUMAG00000015789	NCL	92	77.287	Ursus_maritimus
MGP_CAROLIEiJ_G0014362	Ncl	69	78.873	ENSVPAG00000001796	NCL	69	78.873	Vicugna_pacos
MGP_CAROLIEiJ_G0014362	Ncl	92	77.727	ENSVVUG00000025564	NCL	91	75.730	Vulpes_vulpes