EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0014543 (Gene tree)
Gene ID
110301180
Gene Symbol
R3hdm1
Alias
-
Full Name
R3H domain containing 1
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Plus strand
Length
134436 bases
Position
chr1:119794187-119928622
Accession
110301180
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0019621R3HPF01424.224e-1211
MGP_CAROLIEiJ_P0019627R3HPF01424.225.1e-1211
MGP_CAROLIEiJ_P0019625R3HPF01424.221.2e-1111
MGP_CAROLIEiJ_P0019623R3HPF01424.221.4e-1111
MGP_CAROLIEiJ_P0019622R3HPF01424.223.4e-1111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0019630-5005--- (aa)--
MGP_CAROLIEiJ_T0019628-6407--- (aa)--
MGP_CAROLIEiJ_T0019629-601--- (aa)--
MGP_CAROLIEiJ_T0019624-8100--- (aa)--
MGP_CAROLIEiJ_T0019625-1661-MGP_CAROLIEiJ_P0019625486 (aa)-UPI0004620F03
MGP_CAROLIEiJ_T0019626-453-MGP_CAROLIEiJ_P001962632 (aa)-UPI0004621072
MGP_CAROLIEiJ_T0019627-1040-MGP_CAROLIEiJ_P0019627287 (aa)-UPI0004621093
MGP_CAROLIEiJ_T0019620-2446--- (aa)--
MGP_CAROLIEiJ_T0019621-1130-MGP_CAROLIEiJ_P0019621239 (aa)-UPI00005AC033
MGP_CAROLIEiJ_T0019622-4795XM_021171515MGP_CAROLIEiJ_P00196221135 (aa)XP_021027174UPI000A319A41
MGP_CAROLIEiJ_T0019623-3997-MGP_CAROLIEiJ_P0019623549 (aa)-UPI000005FC45
MGP_CAROLIEiJ_T0019633-6300--- (aa)--
MGP_CAROLIEiJ_T0019632-1155-MGP_CAROLIEiJ_P0019632385 (aa)--
MGP_CAROLIEiJ_T0019634-1574--- (aa)--
MGP_CAROLIEiJ_T0019631-549-MGP_CAROLIEiJ_P0019631182 (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0014543's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0014543's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
MGP_CAROLIEiJ_G0014543R3hdm18657.110MGP_CAROLIEiJ_G0032760Arpp217960.360
MGP_CAROLIEiJ_G0014543R3hdm19759.574MGP_CAROLIEiJ_G0015896R3hdm29657.702
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSG00000048991R3HDM19994.700Homo_sapiens
MGP_CAROLIEiJ_G0014543R3hdm110064.898ENSAPOG00000020850r3hdm19747.915Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0014543R3hdm19993.727ENSAMEG00000014886R3HDM110088.732Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0014543R3hdm19055.357ENSACIG00000018791-8157.178Amphilophus_citrinellus
MGP_CAROLIEiJ_G0014543R3hdm110064.883ENSAOCG00000005192r3hdm19947.456Amphiprion_ocellaris
MGP_CAROLIEiJ_G0014543R3hdm110064.490ENSAPEG00000016108r3hdm19945.564Amphiprion_percula
MGP_CAROLIEiJ_G0014543R3hdm110064.344ENSATEG00000000232r3hdm19944.885Anabas_testudineus
MGP_CAROLIEiJ_G0014543R3hdm110079.070ENSAPLG00000015231R3HDM110074.648Anas_platyrhynchos
MGP_CAROLIEiJ_G0014543R3hdm110077.145ENSACAG00000001676R3HDM110077.496Anolis_carolinensis
MGP_CAROLIEiJ_G0014543R3hdm110093.724ENSANAG00000035334R3HDM110087.775Aotus_nancymaae
MGP_CAROLIEiJ_G0014543R3hdm110062.857ENSACLG00000027282r3hdm19447.053Astatotilapia_calliptera
MGP_CAROLIEiJ_G0014543R3hdm110061.935ENSAMXG00000003536r3hdm110062.704Astyanax_mexicanus
MGP_CAROLIEiJ_G0014543R3hdm110070.850ENSAMXG00000012861R3HDM110071.154Astyanax_mexicanus
MGP_CAROLIEiJ_G0014543R3hdm17957.328ENSAMXG00000020587arpp218837.849Astyanax_mexicanus
MGP_CAROLIEiJ_G0014543R3hdm110092.887ENSBTAG00000013302R3HDM110089.965Bos_taurus
MGP_CAROLIEiJ_G0014543R3hdm110093.305ENSCJAG00000011718R3HDM110087.753Callithrix_jacchus
MGP_CAROLIEiJ_G0014543R3hdm19993.542ENSCAFG00000005075R3HDM110088.732Canis_familiaris
MGP_CAROLIEiJ_G0014543R3hdm19993.542ENSCAFG00020016119R3HDM110091.461Canis_lupus_dingo
MGP_CAROLIEiJ_G0014543R3hdm19993.173ENSCHIG00000020851R3HDM110089.965Capra_hircus
MGP_CAROLIEiJ_G0014543R3hdm110081.185ENSCAPG00000013043-10081.185Cavia_aperea
MGP_CAROLIEiJ_G0014543R3hdm110091.289ENSCPOG00000012784R3HDM110091.561Cavia_porcellus
MGP_CAROLIEiJ_G0014543R3hdm110092.798ENSCCAG00000027199R3HDM110087.676Cebus_capucinus
MGP_CAROLIEiJ_G0014543R3hdm110093.724ENSCATG00000023642R3HDM110089.798Cercocebus_atys
MGP_CAROLIEiJ_G0014543R3hdm110093.728ENSCLAG00000007962R3HDM110093.728Chinchilla_lanigera
MGP_CAROLIEiJ_G0014543R3hdm110090.033ENSCSAG00000016356R3HDM110089.710Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0014543R3hdm18875.722ENSCHOG00000013638R3HDM19175.459Choloepus_hoffmanni
MGP_CAROLIEiJ_G0014543R3hdm19276.213ENSCPBG00000009645R3HDM110090.775Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0014543R3hdm110093.724ENSCANG00000034748R3HDM110086.983Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0014543R3hdm19996.911ENSCGRG00001012357R3hdm19796.911Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0014543R3hdm110098.606ENSCGRG00000012080R3hdm110098.606Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0014543R3hdm110058.923ENSCSEG00000008944r3hdm19942.896Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0014543R3hdm110064.082ENSCVAG00000007582r3hdm19947.059Cyprinodon_variegatus
MGP_CAROLIEiJ_G0014543R3hdm19350.554ENSDARG00000061081arpp219535.670Danio_rerio
MGP_CAROLIEiJ_G0014543R3hdm19986.885ENSDNOG00000000771R3HDM110084.238Dasypus_novemcinctus
MGP_CAROLIEiJ_G0014543R3hdm110096.167ENSDORG00000027689-10096.167Dipodomys_ordii
MGP_CAROLIEiJ_G0014543R3hdm110086.047ENSETEG00000013606R3HDM110076.849Echinops_telfairi
MGP_CAROLIEiJ_G0014543R3hdm18354.902ENSEBUG00000014746arpp219741.254Eptatretus_burgeri
MGP_CAROLIEiJ_G0014543R3hdm110094.979ENSEASG00005007392R3HDM110094.581Equus_asinus_asinus
MGP_CAROLIEiJ_G0014543R3hdm110095.122ENSECAG00000019114R3HDM110094.581Equus_caballus
MGP_CAROLIEiJ_G0014543R3hdm110077.741ENSEEUG00000012589R3HDM18983.398Erinaceus_europaeus
MGP_CAROLIEiJ_G0014543R3hdm17780.000ENSELUG00000004909R3HDM19952.846Esox_lucius
MGP_CAROLIEiJ_G0014543R3hdm17769.196ENSELUG00000014413r3hdm110050.880Esox_lucius
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSFCAG00000027113R3HDM110095.074Felis_catus
MGP_CAROLIEiJ_G0014543R3hdm19979.963ENSFALG00000013731R3HDM19369.093Ficedula_albicollis
MGP_CAROLIEiJ_G0014543R3hdm110094.077ENSFDAG00000016478R3HDM110094.077Fukomys_damarensis
MGP_CAROLIEiJ_G0014543R3hdm110065.870ENSFHEG00000018713r3hdm19946.452Fundulus_heteroclitus
MGP_CAROLIEiJ_G0014543R3hdm17871.353ENSGMOG00000006042-7467.174Gadus_morhua
MGP_CAROLIEiJ_G0014543R3hdm110082.008ENSGALG00000012246R3HDM19985.574Gallus_gallus
MGP_CAROLIEiJ_G0014543R3hdm110064.113ENSGAFG00000006203r3hdm19944.413Gambusia_affinis
MGP_CAROLIEiJ_G0014543R3hdm18072.034ENSGACG00000014925r3hdm19948.187Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0014543R3hdm19782.759ENSGAGG00000007840R3HDM19683.042Gopherus_agassizii
MGP_CAROLIEiJ_G0014543R3hdm110094.774ENSGGOG00000008156R3HDM110087.676Gorilla_gorilla
MGP_CAROLIEiJ_G0014543R3hdm110062.876ENSHBUG00000015737R3HDM19058.015Haplochromis_burtoni
MGP_CAROLIEiJ_G0014543R3hdm110094.077ENSHGLG00000015718R3HDM110094.077Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0014543R3hdm110093.728ENSHGLG00100003184-10093.728Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014543R3hdm19969.492ENSHGLG00100015374-10065.727Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014543R3hdm110059.751ENSHCOG00000013366r3hdm18860.000Hippocampus_comes
MGP_CAROLIEiJ_G0014543R3hdm16057.241ENSHCOG00000005036-5682.500Hippocampus_comes
MGP_CAROLIEiJ_G0014543R3hdm110069.355ENSIPUG00000001676R3HDM19965.476Ictalurus_punctatus
MGP_CAROLIEiJ_G0014543R3hdm16957.143ENSIPUG00000020552arpp218533.775Ictalurus_punctatus
MGP_CAROLIEiJ_G0014543R3hdm110063.600ENSIPUG00000013629r3hdm19569.159Ictalurus_punctatus
MGP_CAROLIEiJ_G0014543R3hdm110094.774ENSSTOG00000007572R3HDM110094.774Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0014543R3hdm110095.122ENSJJAG00000018208-10095.122Jaculus_jaculus
MGP_CAROLIEiJ_G0014543R3hdm15675.439ENSKMAG00000013373-8675.439Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0014543R3hdm110062.857ENSLBEG00000027981-9460.820Labrus_bergylta
MGP_CAROLIEiJ_G0014543R3hdm110074.675ENSLACG00000005334R3HDM19972.157Latimeria_chalumnae
MGP_CAROLIEiJ_G0014543R3hdm19972.697ENSLOCG00000001641r3hdm110066.437Lepisosteus_oculatus
MGP_CAROLIEiJ_G0014543R3hdm19992.505ENSLAFG00000009065R3HDM110090.308Loxodonta_africana
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSMFAG00000030331R3HDM110095.074Macaca_fascicularis
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSMMUG00000009844R3HDM110086.415Macaca_mulatta
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSMNEG00000027793R3HDM110095.074Macaca_nemestrina
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSMLEG00000043189R3HDM110087.412Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0014543R3hdm110065.188ENSMAMG00000004532r3hdm19947.232Mastacembelus_armatus
MGP_CAROLIEiJ_G0014543R3hdm110062.876ENSMZEG00005003157r3hdm19947.349Maylandia_zebra
MGP_CAROLIEiJ_G0014543R3hdm110078.405ENSMGAG00000012461R3HDM110073.450Meleagris_gallopavo
MGP_CAROLIEiJ_G0014543R3hdm110098.955ENSMAUG00000010315R3hdm110098.955Mesocricetus_auratus
MGP_CAROLIEiJ_G0014543R3hdm110093.724ENSMICG00000042655-10084.729Microcebus_murinus
MGP_CAROLIEiJ_G0014543R3hdm110094.142ENSMICG00000005900-10087.346Microcebus_murinus
MGP_CAROLIEiJ_G0014543R3hdm110098.606ENSMOCG00000019833-10098.606Microtus_ochrogaster
MGP_CAROLIEiJ_G0014543R3hdm110081.731ENSMODG00000000923R3HDM19778.592Monodelphis_domestica
MGP_CAROLIEiJ_G0014543R3hdm110065.646ENSMALG00000009000r3hdm110045.356Monopterus_albus
MGP_CAROLIEiJ_G0014543R3hdm1100100.000ENSMUSG00000056211R3hdm1100100.000Mus_musculus
MGP_CAROLIEiJ_G0014543R3hdm1100100.000MGP_PahariEiJ_G0027779R3hdm1100100.000Mus_pahari
MGP_CAROLIEiJ_G0014543R3hdm1100100.000MGP_SPRETEiJ_G0015350R3hdm1100100.000Mus_spretus
MGP_CAROLIEiJ_G0014543R3hdm19993.727ENSMPUG00000002412R3HDM110088.370Mustela_putorius_furo
MGP_CAROLIEiJ_G0014543R3hdm19992.804ENSMLUG00000013824R3HDM110087.094Myotis_lucifugus
MGP_CAROLIEiJ_G0014543R3hdm110095.470ENSNGAG00000001313-10095.470Nannospalax_galili
MGP_CAROLIEiJ_G0014543R3hdm110093.724ENSNLEG00000008622R3HDM110087.412Nomascus_leucogenys
MGP_CAROLIEiJ_G0014543R3hdm19474.612ENSMEUG00000011784R3HDM110068.571Notamacropus_eugenii
MGP_CAROLIEiJ_G0014543R3hdm110094.774ENSODEG00000008607R3HDM110094.774Octodon_degus
MGP_CAROLIEiJ_G0014543R3hdm18071.008ENSONIG00000012017r3hdm19845.789Oreochromis_niloticus
MGP_CAROLIEiJ_G0014543R3hdm110085.050ENSOANG00000007987R3HDM110077.125Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0014543R3hdm19993.727ENSOCUG00000017366R3HDM19886.824Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0014543R3hdm110065.188ENSORLG00000004297r3hdm19946.698Oryzias_latipes
MGP_CAROLIEiJ_G0014543R3hdm110065.188ENSORLG00020019252-9360.526Oryzias_latipes_hni
MGP_CAROLIEiJ_G0014543R3hdm110065.188ENSORLG00015017355r3hdm19946.837Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0014543R3hdm110063.279ENSOMEG00000003882-9458.126Oryzias_melastigma
MGP_CAROLIEiJ_G0014543R3hdm19993.358ENSOGAG00000003136R3HDM110087.753Otolemur_garnettii
MGP_CAROLIEiJ_G0014543R3hdm19993.173ENSOARG00000010788R3HDM110087.048Ovis_aries
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSPPAG00000027858R3HDM110087.610Pan_paniscus
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSPPRG00000002626R3HDM110088.458Panthera_pardus
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSPTIG00000016581R3HDM110088.194Panthera_tigris_altaica
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSPTRG00000012494R3HDM110086.555Pan_troglodytes
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSPANG00000026448R3HDM110087.412Papio_anubis
MGP_CAROLIEiJ_G0014543R3hdm110066.207ENSPKIG00000011224R3HDM19063.504Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0014543R3hdm19766.549ENSPKIG00000004328r3hdm19174.921Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0014543R3hdm110079.402ENSPSIG00000012915R3HDM110074.670Pelodiscus_sinensis
MGP_CAROLIEiJ_G0014543R3hdm16878.395ENSPMGG00000011264-9153.687Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0014543R3hdm110098.606ENSPEMG00000015187R3hdm110098.606Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0014543R3hdm110090.417ENSPCIG00000002491R3HDM110089.461Phascolarctos_cinereus
MGP_CAROLIEiJ_G0014543R3hdm110063.576ENSPFOG00000015036r3hdm19946.994Poecilia_formosa
MGP_CAROLIEiJ_G0014543R3hdm110063.306ENSPLAG00000018042r3hdm19944.041Poecilia_latipinna
MGP_CAROLIEiJ_G0014543R3hdm110063.306ENSPMEG00000023947r3hdm19944.175Poecilia_mexicana
MGP_CAROLIEiJ_G0014543R3hdm110064.189ENSPREG00000007902r3hdm18862.233Poecilia_reticulata
MGP_CAROLIEiJ_G0014543R3hdm110086.719ENSPPYG00000012815R3HDM110085.552Pongo_abelii
MGP_CAROLIEiJ_G0014543R3hdm110086.711ENSPCAG00000006208R3HDM110075.947Procavia_capensis
MGP_CAROLIEiJ_G0014543R3hdm110087.654ENSPCOG00000012698R3HDM110085.237Propithecus_coquereli
MGP_CAROLIEiJ_G0014543R3hdm19987.823ENSPVAG00000006098R3HDM110077.904Pteropus_vampyrus
MGP_CAROLIEiJ_G0014543R3hdm110062.876ENSPNYG00000008701-9759.569Pundamilia_nyererei
MGP_CAROLIEiJ_G0014543R3hdm19363.109ENSPNAG00000013952r3hdm110063.023Pygocentrus_nattereri
MGP_CAROLIEiJ_G0014543R3hdm17955.702ENSPNAG00000004162arpp215757.600Pygocentrus_nattereri
MGP_CAROLIEiJ_G0014543R3hdm17581.283ENSPNAG00000005436R3HDM19975.884Pygocentrus_nattereri
MGP_CAROLIEiJ_G0014543R3hdm110097.533ENSRNOG00000004099R3hdm110097.533Rattus_norvegicus
MGP_CAROLIEiJ_G0014543R3hdm110086.047ENSRBIG00000033317R3HDM110097.786Rhinopithecus_bieti
MGP_CAROLIEiJ_G0014543R3hdm110094.561ENSRROG00000034534R3HDM110086.719Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0014543R3hdm110092.469ENSSBOG00000020389R3HDM110087.764Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0014543R3hdm110090.417ENSSHAG00000016999R3HDM110080.035Sarcophilus_harrisii
MGP_CAROLIEiJ_G0014543R3hdm110068.163ENSSFOG00015019851-9956.312Scleropages_formosus
MGP_CAROLIEiJ_G0014543R3hdm110070.790ENSSFOG00015014134r3hdm110070.073Scleropages_formosus
MGP_CAROLIEiJ_G0014543R3hdm110062.069ENSSMAG00000001669r3hdm19942.477Scophthalmus_maximus
MGP_CAROLIEiJ_G0014543R3hdm110064.626ENSSDUG00000010749r3hdm19945.696Seriola_dumerili
MGP_CAROLIEiJ_G0014543R3hdm110063.333ENSSLDG00000004499r3hdm19945.447Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0014543R3hdm110077.409ENSSARG00000000352-6981.728Sorex_araneus
MGP_CAROLIEiJ_G0014543R3hdm19585.413ENSSPUG00000004167R3HDM110076.646Sphenodon_punctatus
MGP_CAROLIEiJ_G0014543R3hdm110065.870ENSSPAG00000004648r3hdm19947.323Stegastes_partitus
MGP_CAROLIEiJ_G0014543R3hdm110094.425ENSSSCG00000015692R3HDM110091.021Sus_scrofa
MGP_CAROLIEiJ_G0014543R3hdm19979.412ENSTGUG00000011750R3HDM110070.202Taeniopygia_guttata
MGP_CAROLIEiJ_G0014543R3hdm18960.356ENSTRUG00000011654r3hdm19346.392Takifugu_rubripes
MGP_CAROLIEiJ_G0014543R3hdm18965.926ENSTNIG00000010362r3hdm19944.293Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0014543R3hdm19488.155ENSTTRG00000003935R3HDM110080.806Tursiops_truncatus
MGP_CAROLIEiJ_G0014543R3hdm110094.979ENSUAMG00000024806R3HDM19991.144Ursus_americanus
MGP_CAROLIEiJ_G0014543R3hdm110094.979ENSUMAG00000005552R3HDM110085.222Ursus_maritimus
MGP_CAROLIEiJ_G0014543R3hdm18695.973ENSVPAG00000007333R3HDM19385.965Vicugna_pacos
MGP_CAROLIEiJ_G0014543R3hdm110094.774ENSVVUG00000006457R3HDM110091.454Vulpes_vulpes
MGP_CAROLIEiJ_G0014543R3hdm110067.774ENSXETG00000019330r3hdm110064.043Xenopus_tropicalis
MGP_CAROLIEiJ_G0014543R3hdm17275.978ENSXCOG00000017448r3hdm19646.118Xiphophorus_couchianus
MGP_CAROLIEiJ_G0014543R3hdm110064.548ENSXMAG00000007885r3hdm19947.032Xiphophorus_maculatus

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