EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0014692 (Gene tree)
Gene ID: 110303450
Gene Symbol: Swt1
Alias: 1200016B10Rik
Full Name: SWT1%2C RNA endoribonuclease homolog
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 57110 bases
Position: chr1:142131276-142188385
Accession: 110303450
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0020316	PIN_4	PF13638.6	3.8e-28	1	1
MGP_CAROLIEiJ_P0020321	PIN_4	PF13638.6	3.4e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0020321	-	752	-	MGP_CAROLIEiJ_P0020321	250 (aa)	-	-
MGP_CAROLIEiJ_T0020320	-	522	-	MGP_CAROLIEiJ_P0020320	173 (aa)	-	-
MGP_CAROLIEiJ_T0020323	-	485	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020322	-	2723	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020318	-	334	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020319	-	323	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020315	-	5347	-	MGP_CAROLIEiJ_P0020315	887 (aa)	-	UPI000A3175BF
MGP_CAROLIEiJ_T0020316	-	3673	XM_021174547	MGP_CAROLIEiJ_P0020316	908 (aa)	XP_021030206	UPI000A315C53
MGP_CAROLIEiJ_T0020317	-	2839	-	MGP_CAROLIEiJ_P0020317	680 (aa)	-	-
MGP_CAROLIEiJ_T0020325	-	1394	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020324	-	5015	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0014692's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0014692's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0014692	Swt1	99	70.276	ENSG00000116668	SWT1	99	69.282	Homo_sapiens
MGP_CAROLIEiJ_G0014692	Swt1	73	42.077	ENSAPOG00000014897	-	59	34.991	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0014692	Swt1	99	69.290	ENSAMEG00000013585	SWT1	99	68.958	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0014692	Swt1	73	42.077	ENSAOCG00000013932	swt1	58	35.986	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0014692	Swt1	73	42.623	ENSAPEG00000009613	-	58	35.986	Amphiprion_percula
MGP_CAROLIEiJ_G0014692	Swt1	68	48.538	ENSATEG00000018946	swt1	58	36.949	Anabas_testudineus
MGP_CAROLIEiJ_G0014692	Swt1	70	58.989	ENSAPLG00000008607	SWT1	91	51.570	Anas_platyrhynchos
MGP_CAROLIEiJ_G0014692	Swt1	70	57.303	ENSACAG00000002276	SWT1	71	47.145	Anolis_carolinensis
MGP_CAROLIEiJ_G0014692	Swt1	99	69.613	ENSANAG00000027068	SWT1	99	69.205	Aotus_nancymaae
MGP_CAROLIEiJ_G0014692	Swt1	68	42.442	ENSACLG00000009742	swt1	75	33.013	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0014692	Swt1	75	42.439	ENSAMXG00000010971	swt1	59	38.710	Astyanax_mexicanus
MGP_CAROLIEiJ_G0014692	Swt1	71	85.311	ENSBTAG00000004492	SWT1	99	64.126	Bos_taurus
MGP_CAROLIEiJ_G0014692	Swt1	99	68.619	ENSCJAG00000005544	SWT1	99	68.102	Callithrix_jacchus
MGP_CAROLIEiJ_G0014692	Swt1	99	70.189	ENSCAFG00000013543	SWT1	99	68.561	Canis_familiaris
MGP_CAROLIEiJ_G0014692	Swt1	99	69.011	ENSCAFG00020015648	SWT1	99	70.047	Canis_lupus_dingo
MGP_CAROLIEiJ_G0014692	Swt1	95	70.609	ENSCHIG00000023511	SWT1	99	79.492	Capra_hircus
MGP_CAROLIEiJ_G0014692	Swt1	99	70.497	ENSTSYG00000010470	SWT1	99	69.613	Carlito_syrichta
MGP_CAROLIEiJ_G0014692	Swt1	93	69.185	ENSCPOG00000014251	SWT1	100	68.345	Cavia_porcellus
MGP_CAROLIEiJ_G0014692	Swt1	99	70.640	ENSCCAG00000033926	SWT1	99	69.647	Cebus_capucinus
MGP_CAROLIEiJ_G0014692	Swt1	99	69.934	ENSCATG00000042210	SWT1	99	81.090	Cercocebus_atys
MGP_CAROLIEiJ_G0014692	Swt1	92	77.157	ENSCLAG00000013959	SWT1	99	68.350	Chinchilla_lanigera
MGP_CAROLIEiJ_G0014692	Swt1	99	69.604	ENSCSAG00000012895	SWT1	99	69.087	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0014692	Swt1	86	82.500	ENSCHOG00000002211	-	64	82.500	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0014692	Swt1	71	62.147	ENSCPBG00000015691	SWT1	76	53.247	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0014692	Swt1	99	69.503	ENSCANG00000032207	SWT1	99	80.822	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0014692	Swt1	100	88.043	ENSCGRG00001022955	Swt1	99	80.328	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0014692	Swt1	100	88.043	ENSCGRG00000010224	Swt1	99	80.328	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0014692	Swt1	88	41.593	ENSCSEG00000017352	swt1	81	34.748	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0014692	Swt1	68	47.674	ENSDARG00000094010	swt1	72	36.119	Danio_rerio
MGP_CAROLIEiJ_G0014692	Swt1	96	62.317	ENSDNOG00000005254	SWT1	100	64.727	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0014692	Swt1	99	69.731	ENSDORG00000010531	Swt1	99	69.058	Dipodomys_ordii
MGP_CAROLIEiJ_G0014692	Swt1	96	67.012	ENSEASG00005005530	SWT1	99	66.706	Equus_asinus_asinus
MGP_CAROLIEiJ_G0014692	Swt1	92	70.228	ENSECAG00000012085	SWT1	99	69.148	Equus_caballus
MGP_CAROLIEiJ_G0014692	Swt1	85	84.524	ENSEEUG00000003664	SWT1	87	84.524	Erinaceus_europaeus
MGP_CAROLIEiJ_G0014692	Swt1	90	42.291	ENSELUG00000020565	swt1	57	37.245	Esox_lucius
MGP_CAROLIEiJ_G0014692	Swt1	99	69.580	ENSFCAG00000011286	SWT1	99	68.473	Felis_catus
MGP_CAROLIEiJ_G0014692	Swt1	85	49.167	ENSFALG00000003206	SWT1	69	50.962	Ficedula_albicollis
MGP_CAROLIEiJ_G0014692	Swt1	99	69.531	ENSFDAG00000007569	SWT1	99	69.085	Fukomys_damarensis
MGP_CAROLIEiJ_G0014692	Swt1	65	61.728	ENSGALG00000034230	SWT1	76	48.673	Gallus_gallus
MGP_CAROLIEiJ_G0014692	Swt1	67	45.087	ENSGAFG00000007803	-	62	34.249	Gambusia_affinis
MGP_CAROLIEiJ_G0014692	Swt1	71	62.011	ENSGAGG00000025050	SWT1	99	57.686	Gopherus_agassizii
MGP_CAROLIEiJ_G0014692	Swt1	59	81.034	ENSGGOG00000041167	-	95	81.034	Gorilla_gorilla
MGP_CAROLIEiJ_G0014692	Swt1	68	42.442	ENSHBUG00000006188	swt1	74	32.919	Haplochromis_burtoni
MGP_CAROLIEiJ_G0014692	Swt1	99	69.718	ENSHGLG00000006542	SWT1	99	69.300	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0014692	Swt1	92	82.564	ENSHGLG00100014408	SWT1	99	70.203	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014692	Swt1	69	47.701	ENSIPUG00000009113	-	58	37.716	Ictalurus_punctatus
MGP_CAROLIEiJ_G0014692	Swt1	99	71.875	ENSSTOG00000010356	SWT1	99	71.429	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0014692	Swt1	91	82.184	ENSJJAG00000015927	Swt1	99	68.687	Jaculus_jaculus
MGP_CAROLIEiJ_G0014692	Swt1	68	42.941	ENSKMAG00000012533	swt1	59	35.204	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0014692	Swt1	62	47.134	ENSLBEG00000020663	-	57	37.282	Labrus_bergylta
MGP_CAROLIEiJ_G0014692	Swt1	70	56.571	ENSLACG00000009194	SWT1	99	44.711	Latimeria_chalumnae
MGP_CAROLIEiJ_G0014692	Swt1	69	48.555	ENSLOCG00000001749	swt1	97	42.351	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0014692	Swt1	70	82.584	ENSLAFG00000004346	-	99	81.261	Loxodonta_africana
MGP_CAROLIEiJ_G0014692	Swt1	99	69.493	ENSMFAG00000031793	SWT1	99	80.513	Macaca_fascicularis
MGP_CAROLIEiJ_G0014692	Swt1	99	67.213	ENSMMUG00000013882	SWT1	99	77.835	Macaca_mulatta
MGP_CAROLIEiJ_G0014692	Swt1	99	69.714	ENSMNEG00000035502	SWT1	99	80.684	Macaca_nemestrina
MGP_CAROLIEiJ_G0014692	Swt1	99	70.166	ENSMLEG00000038692	SWT1	99	80.920	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0014692	Swt1	68	42.442	ENSMZEG00005018489	swt1	74	32.919	Maylandia_zebra
MGP_CAROLIEiJ_G0014692	Swt1	65	60.976	ENSMGAG00000000973	SWT1	100	52.174	Meleagris_gallopavo
MGP_CAROLIEiJ_G0014692	Swt1	100	90.395	ENSMAUG00000007996	Swt1	99	73.472	Mesocricetus_auratus
MGP_CAROLIEiJ_G0014692	Swt1	99	71.982	ENSMICG00000014975	SWT1	99	70.986	Microcebus_murinus
MGP_CAROLIEiJ_G0014692	Swt1	100	88.043	ENSMOCG00000009776	Swt1	99	80.968	Microtus_ochrogaster
MGP_CAROLIEiJ_G0014692	Swt1	99	57.500	ENSMODG00000007472	SWT1	99	56.522	Monodelphis_domestica
MGP_CAROLIEiJ_G0014692	Swt1	72	46.448	ENSMALG00000019308	swt1	63	35.840	Monopterus_albus
MGP_CAROLIEiJ_G0014692	Swt1	100	96.610	ENSMUSG00000052748	Swt1	100	95.595	Mus_musculus
MGP_CAROLIEiJ_G0014692	Swt1	100	96.610	MGP_PahariEiJ_G0027928	Swt1	100	96.610	Mus_pahari
MGP_CAROLIEiJ_G0014692	Swt1	100	98.870	MGP_SPRETEiJ_G0015499	Swt1	100	97.200	Mus_spretus
MGP_CAROLIEiJ_G0014692	Swt1	99	69.623	ENSMPUG00000011913	SWT1	99	68.736	Mustela_putorius_furo
MGP_CAROLIEiJ_G0014692	Swt1	94	76.923	ENSMLUG00000001142	SWT1	99	66.885	Myotis_lucifugus
MGP_CAROLIEiJ_G0014692	Swt1	94	93.252	ENSNGAG00000021080	Swt1	99	77.033	Nannospalax_galili
MGP_CAROLIEiJ_G0014692	Swt1	99	70.243	ENSNLEG00000018031	SWT1	99	70.166	Nomascus_leucogenys
MGP_CAROLIEiJ_G0014692	Swt1	99	44.751	ENSMEUG00000000236	-	99	43.978	Notamacropus_eugenii
MGP_CAROLIEiJ_G0014692	Swt1	89	66.667	ENSOPRG00000000692	SWT1	89	66.667	Ochotona_princeps
MGP_CAROLIEiJ_G0014692	Swt1	70	42.938	ENSONIG00000009994	swt1	100	36.976	Oreochromis_niloticus
MGP_CAROLIEiJ_G0014692	Swt1	71	75.843	ENSOANG00000001013	-	96	57.806	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0014692	Swt1	100	63.245	ENSOCUG00000004901	SWT1	100	63.245	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0014692	Swt1	62	46.497	ENSORLG00000009682	swt1	58	34.708	Oryzias_latipes
MGP_CAROLIEiJ_G0014692	Swt1	63	45.912	ENSORLG00020011654	swt1	59	35.000	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0014692	Swt1	63	46.541	ENSORLG00015007734	swt1	59	34.708	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0014692	Swt1	66	43.713	ENSOMEG00000006607	swt1	57	35.605	Oryzias_melastigma
MGP_CAROLIEiJ_G0014692	Swt1	92	85.311	ENSOGAG00000016195	SWT1	99	68.584	Otolemur_garnettii
MGP_CAROLIEiJ_G0014692	Swt1	99	69.889	ENSOARG00000004156	SWT1	99	68.083	Ovis_aries
MGP_CAROLIEiJ_G0014692	Swt1	99	70.276	ENSPPAG00000021400	SWT1	99	69.171	Pan_paniscus
MGP_CAROLIEiJ_G0014692	Swt1	99	69.767	ENSPPRG00000023754	SWT1	99	68.771	Panthera_pardus
MGP_CAROLIEiJ_G0014692	Swt1	99	69.657	ENSPTIG00000021889	SWT1	99	68.660	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0014692	Swt1	99	70.276	ENSPTRG00000001777	SWT1	99	69.171	Pan_troglodytes
MGP_CAROLIEiJ_G0014692	Swt1	99	69.350	ENSPANG00000005099	SWT1	99	80.409	Papio_anubis
MGP_CAROLIEiJ_G0014692	Swt1	62	48.077	ENSPKIG00000005979	swt1	58	36.475	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0014692	Swt1	71	60.335	ENSPSIG00000008961	SWT1	75	52.023	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0014692	Swt1	66	47.024	ENSPMGG00000000152	-	54	41.053	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0014692	Swt1	100	90.960	ENSPEMG00000008208	Swt1	99	82.838	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0014692	Swt1	99	56.489	ENSPCIG00000002443	SWT1	99	73.846	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0014692	Swt1	64	45.625	ENSPFOG00000010988	-	69	34.775	Poecilia_formosa
MGP_CAROLIEiJ_G0014692	Swt1	64	45.625	ENSPLAG00000022908	-	59	34.642	Poecilia_latipinna
MGP_CAROLIEiJ_G0014692	Swt1	64	45.625	ENSPMEG00000006943	-	59	34.471	Poecilia_mexicana
MGP_CAROLIEiJ_G0014692	Swt1	99	69.613	ENSPPYG00000000415	SWT1	99	68.985	Pongo_abelii
MGP_CAROLIEiJ_G0014692	Swt1	100	57.569	ENSPCAG00000008337	SWT1	100	57.190	Procavia_capensis
MGP_CAROLIEiJ_G0014692	Swt1	69	81.319	ENSPCOG00000018195	-	93	81.319	Propithecus_coquereli
MGP_CAROLIEiJ_G0014692	Swt1	80	70.663	ENSPVAG00000005968	SWT1	79	70.763	Pteropus_vampyrus
MGP_CAROLIEiJ_G0014692	Swt1	68	42.442	ENSPNYG00000012934	swt1	74	32.919	Pundamilia_nyererei
MGP_CAROLIEiJ_G0014692	Swt1	66	48.485	ENSPNAG00000017795	swt1	58	38.743	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0014692	Swt1	100	90.556	ENSRNOG00000032258	Swt1	99	87.802	Rattus_norvegicus
MGP_CAROLIEiJ_G0014692	Swt1	99	67.182	ENSRBIG00000040630	SWT1	99	77.911	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0014692	Swt1	87	66.176	ENSRROG00000028596	SWT1	100	63.836	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0014692	Swt1	99	70.232	ENSSBOG00000028825	SWT1	99	69.239	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0014692	Swt1	99	57.481	ENSSHAG00000009241	SWT1	99	56.850	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0014692	Swt1	65	50.617	ENSSFOG00015004895	swt1	57	40.526	Scleropages_formosus
MGP_CAROLIEiJ_G0014692	Swt1	68	45.614	ENSSDUG00000012345	swt1	58	35.986	Seriola_dumerili
MGP_CAROLIEiJ_G0014692	Swt1	64	47.500	ENSSLDG00000003821	swt1	58	35.467	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0014692	Swt1	70	81.143	ENSSARG00000011524	-	88	77.778	Sorex_araneus
MGP_CAROLIEiJ_G0014692	Swt1	78	50.070	ENSSPUG00000003899	SWT1	79	50.070	Sphenodon_punctatus
MGP_CAROLIEiJ_G0014692	Swt1	64	44.375	ENSSPAG00000001030	swt1	58	34.948	Stegastes_partitus
MGP_CAROLIEiJ_G0014692	Swt1	94	73.122	ENSSSCG00000015569	SWT1	99	70.477	Sus_scrofa
MGP_CAROLIEiJ_G0014692	Swt1	63	62.420	ENSTGUG00000003718	-	100	54.383	Taeniopygia_guttata
MGP_CAROLIEiJ_G0014692	Swt1	70	42.045	ENSTRUG00000006420	swt1	66	35.088	Takifugu_rubripes
MGP_CAROLIEiJ_G0014692	Swt1	57	80.645	ENSTBEG00000016891	-	54	80.645	Tupaia_belangeri
MGP_CAROLIEiJ_G0014692	Swt1	99	67.845	ENSTTRG00000005914	SWT1	99	66.851	Tursiops_truncatus
MGP_CAROLIEiJ_G0014692	Swt1	99	68.404	ENSUAMG00000020937	SWT1	98	71.498	Ursus_americanus
MGP_CAROLIEiJ_G0014692	Swt1	99	68.625	ENSUMAG00000021918	SWT1	99	68.625	Ursus_maritimus
MGP_CAROLIEiJ_G0014692	Swt1	92	79.147	ENSVPAG00000011855	SWT1	92	79.147	Vicugna_pacos
MGP_CAROLIEiJ_G0014692	Swt1	99	69.324	ENSVVUG00000009182	SWT1	99	68.992	Vulpes_vulpes
MGP_CAROLIEiJ_G0014692	Swt1	71	45.251	ENSXMAG00000023472	-	69	32.386	Xiphophorus_maculatus