EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0014704 (Gene tree)
Gene ID: 110305373
Gene Symbol: Smg7
Alias: 9430023P16Rik
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 63839 bases
Position: chr1:143582305-143646143
Accession: 110305373
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0020378	EST1	PF10374.9	5.5e-25	1	1
MGP_CAROLIEiJ_P0020380	EST1	PF10374.9	5.5e-25	1	1
MGP_CAROLIEiJ_P0020379	EST1	PF10374.9	5.6e-25	1	1
MGP_CAROLIEiJ_P0020378	EST1_DNA_bind	PF10373.9	1.2e-55	1	1
MGP_CAROLIEiJ_P0020380	EST1_DNA_bind	PF10373.9	1.2e-55	1	1
MGP_CAROLIEiJ_P0020379	EST1_DNA_bind	PF10373.9	1.2e-55	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0020383	-	522	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020382	-	672	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020381	-	568	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020380	-	3929	-	MGP_CAROLIEiJ_P0020380	1138 (aa)	-	UPI000A318860
MGP_CAROLIEiJ_T0020378	-	5760	XM_021177656	MGP_CAROLIEiJ_P0020378	1134 (aa)	XP_021033315	UPI000A316485
MGP_CAROLIEiJ_T0020379	-	5785	XM_021177581	MGP_CAROLIEiJ_P0020379	1146 (aa)	XP_021033240	UPI000A318ACF

Gene Model

Click here to download MGP_CAROLIEiJ_G0014704's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0014704's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0014704	Smg7	100	95.735	ENSG00000116698	SMG7	100	96.032	Homo_sapiens
MGP_CAROLIEiJ_G0014704	Smg7	88	73.828	ENSAPOG00000009611	smg7	95	73.828	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0014704	Smg7	99	94.066	ENSAMEG00000002357	SMG7	99	94.597	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0014704	Smg7	97	63.725	ENSACIG00000015152	smg7	98	67.123	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0014704	Smg7	99	65.612	ENSAOCG00000013538	smg7	99	66.325	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0014704	Smg7	99	65.470	ENSAPEG00000007851	smg7	99	66.183	Amphiprion_percula
MGP_CAROLIEiJ_G0014704	Smg7	99	65.306	ENSATEG00000006931	smg7	99	65.561	Anabas_testudineus
MGP_CAROLIEiJ_G0014704	Smg7	100	87.227	ENSAPLG00000015811	SMG7	100	87.227	Anas_platyrhynchos
MGP_CAROLIEiJ_G0014704	Smg7	100	84.043	ENSACAG00000014989	SMG7	100	84.294	Anolis_carolinensis
MGP_CAROLIEiJ_G0014704	Smg7	100	94.459	ENSANAG00000028114	SMG7	100	94.723	Aotus_nancymaae
MGP_CAROLIEiJ_G0014704	Smg7	99	64.766	ENSACLG00000022079	smg7	99	65.895	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0014704	Smg7	99	66.783	ENSAMXG00000020809	smg7	99	67.130	Astyanax_mexicanus
MGP_CAROLIEiJ_G0014704	Smg7	100	93.995	ENSBTAG00000008003	SMG7	100	94.019	Bos_taurus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.387	ENSCJAG00000005135	SMG7	99	95.648	Callithrix_jacchus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.213	ENSCAFG00000013276	SMG7	98	95.648	Canis_familiaris
MGP_CAROLIEiJ_G0014704	Smg7	100	95.213	ENSCAFG00020015475	SMG7	98	95.648	Canis_lupus_dingo
MGP_CAROLIEiJ_G0014704	Smg7	99	93.822	ENSCHIG00000018192	SMG7	99	94.704	Capra_hircus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.039	ENSTSYG00000002667	SMG7	100	94.371	Carlito_syrichta
MGP_CAROLIEiJ_G0014704	Smg7	100	95.300	ENSCPOG00000008906	SMG7	99	95.822	Cavia_porcellus
MGP_CAROLIEiJ_G0014704	Smg7	100	94.547	ENSCCAG00000028596	SMG7	100	94.811	Cebus_capucinus
MGP_CAROLIEiJ_G0014704	Smg7	100	96.258	ENSCATG00000011063	SMG7	100	95.163	Cercocebus_atys
MGP_CAROLIEiJ_G0014704	Smg7	100	95.126	ENSCLAG00000010751	SMG7	100	95.474	Chinchilla_lanigera
MGP_CAROLIEiJ_G0014704	Smg7	100	95.735	ENSCSAG00000012654	SMG7	98	96.084	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0014704	Smg7	92	87.106	ENSCHOG00000010522	SMG7	93	87.679	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0014704	Smg7	100	89.833	ENSCPBG00000015724	SMG7	100	89.571	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0014704	Smg7	99	94.681	ENSCANG00000015680	SMG7	99	95.035	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0014704	Smg7	100	98.345	ENSCGRG00001013705	Smg7	100	98.333	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0014704	Smg7	100	98.345	ENSCGRG00000018401	Smg7	100	98.345	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0014704	Smg7	95	69.000	ENSCVAG00000011842	smg7	99	68.500	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0014704	Smg7	99	66.724	ENSDARG00000060767	smg7	99	67.329	Danio_rerio
MGP_CAROLIEiJ_G0014704	Smg7	100	94.865	ENSDORG00000007331	Smg7	100	95.213	Dipodomys_ordii
MGP_CAROLIEiJ_G0014704	Smg7	97	93.931	ENSETEG00000002654	SMG7	100	94.293	Echinops_telfairi
MGP_CAROLIEiJ_G0014704	Smg7	100	96.319	ENSEASG00005006524	SMG7	100	96.319	Equus_asinus_asinus
MGP_CAROLIEiJ_G0014704	Smg7	100	96.231	ENSECAG00000004313	SMG7	100	96.231	Equus_caballus
MGP_CAROLIEiJ_G0014704	Smg7	97	93.665	ENSEEUG00000002024	SMG7	94	94.299	Erinaceus_europaeus
MGP_CAROLIEiJ_G0014704	Smg7	99	64.847	ENSELUG00000010293	smg7	99	65.368	Esox_lucius
MGP_CAROLIEiJ_G0014704	Smg7	100	95.968	ENSFCAG00000010900	SMG7	100	95.968	Felis_catus
MGP_CAROLIEiJ_G0014704	Smg7	98	82.794	ENSFALG00000003047	SMG7	100	82.423	Ficedula_albicollis
MGP_CAROLIEiJ_G0014704	Smg7	99	95.343	ENSFDAG00000012121	SMG7	99	96.075	Fukomys_damarensis
MGP_CAROLIEiJ_G0014704	Smg7	99	64.151	ENSFHEG00000011073	smg7	99	64.696	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0014704	Smg7	89	74.242	ENSGMOG00000004916	smg7	99	56.100	Gadus_morhua
MGP_CAROLIEiJ_G0014704	Smg7	100	87.675	ENSGALG00000004667	SMG7	100	87.937	Gallus_gallus
MGP_CAROLIEiJ_G0014704	Smg7	99	64.003	ENSGAFG00000019000	smg7	99	63.918	Gambusia_affinis
MGP_CAROLIEiJ_G0014704	Smg7	97	64.186	ENSGACG00000001634	smg7	99	64.799	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0014704	Smg7	100	96.171	ENSGGOG00000002342	SMG7	100	95.075	Gorilla_gorilla
MGP_CAROLIEiJ_G0014704	Smg7	99	63.934	ENSHBUG00000003726	smg7	97	72.081	Haplochromis_burtoni
MGP_CAROLIEiJ_G0014704	Smg7	100	94.371	ENSHGLG00000009353	SMG7	100	95.722	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0014704	Smg7	100	88.168	ENSHGLG00100004878	-	100	88.168	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014704	Smg7	100	94.459	ENSHGLG00100009637	-	100	94.811	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014704	Smg7	99	67.452	ENSIPUG00000016997	smg7	99	67.655	Ictalurus_punctatus
MGP_CAROLIEiJ_G0014704	Smg7	100	96.345	ENSSTOG00000000401	SMG7	100	96.345	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0014704	Smg7	100	94.825	ENSJJAG00000012351	Smg7	100	95.088	Jaculus_jaculus
MGP_CAROLIEiJ_G0014704	Smg7	90	69.500	ENSKMAG00000004900	smg7	97	69.500	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0014704	Smg7	52	62.167	ENSLBEG00000005220	-	75	64.273	Labrus_bergylta
MGP_CAROLIEiJ_G0014704	Smg7	99	65.341	ENSLBEG00000002983	smg7	99	65.687	Labrus_bergylta
MGP_CAROLIEiJ_G0014704	Smg7	99	75.174	ENSLACG00000000972	SMG7	99	75.152	Latimeria_chalumnae
MGP_CAROLIEiJ_G0014704	Smg7	99	67.672	ENSLOCG00000002010	smg7	99	67.923	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.213	ENSLAFG00000008186	SMG7	100	95.561	Loxodonta_africana
MGP_CAROLIEiJ_G0014704	Smg7	100	96.345	ENSMFAG00000031653	SMG7	100	96.319	Macaca_fascicularis
MGP_CAROLIEiJ_G0014704	Smg7	100	96.258	ENSMMUG00000018458	SMG7	98	96.258	Macaca_mulatta
MGP_CAROLIEiJ_G0014704	Smg7	100	94.811	ENSMNEG00000034798	SMG7	100	95.163	Macaca_nemestrina
MGP_CAROLIEiJ_G0014704	Smg7	100	96.258	ENSMLEG00000037170	SMG7	100	95.163	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0014704	Smg7	88	64.465	ENSMAMG00000018733	smg7	85	65.504	Mastacembelus_armatus
MGP_CAROLIEiJ_G0014704	Smg7	99	65.325	ENSMZEG00005015247	smg7	99	65.277	Maylandia_zebra
MGP_CAROLIEiJ_G0014704	Smg7	99	87.367	ENSMGAG00000001561	SMG7	99	87.633	Meleagris_gallopavo
MGP_CAROLIEiJ_G0014704	Smg7	100	98.519	ENSMAUG00000019484	Smg7	100	98.519	Mesocricetus_auratus
MGP_CAROLIEiJ_G0014704	Smg7	100	96.084	ENSMICG00000007145	SMG7	100	96.084	Microcebus_murinus
MGP_CAROLIEiJ_G0014704	Smg7	100	98.345	ENSMOCG00000020748	Smg7	100	98.345	Microtus_ochrogaster
MGP_CAROLIEiJ_G0014704	Smg7	99	64.323	ENSMMOG00000001524	smg7	99	64.706	Mola_mola
MGP_CAROLIEiJ_G0014704	Smg7	92	90.607	ENSMODG00000007139	SMG7	99	90.892	Monodelphis_domestica
MGP_CAROLIEiJ_G0014704	Smg7	99	64.888	ENSMALG00000000061	smg7	93	67.164	Monopterus_albus
MGP_CAROLIEiJ_G0014704	Smg7	100	99.390	ENSMUSG00000042772	Smg7	100	99.390	Mus_musculus
MGP_CAROLIEiJ_G0014704	Smg7	100	99.216	MGP_PahariEiJ_G0027940	Smg7	100	99.216	Mus_pahari
MGP_CAROLIEiJ_G0014704	Smg7	100	99.477	MGP_SPRETEiJ_G0015511	Smg7	100	99.477	Mus_spretus
MGP_CAROLIEiJ_G0014704	Smg7	98	95.365	ENSMPUG00000011732	SMG7	97	95.900	Mustela_putorius_furo
MGP_CAROLIEiJ_G0014704	Smg7	99	94.616	ENSMLUG00000015417	SMG7	99	94.969	Myotis_lucifugus
MGP_CAROLIEiJ_G0014704	Smg7	100	97.038	ENSNGAG00000009836	Smg7	100	97.038	Nannospalax_galili
MGP_CAROLIEiJ_G0014704	Smg7	98	60.889	ENSNBRG00000024343	smg7	98	70.000	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0014704	Smg7	100	96.258	ENSNLEG00000018018	SMG7	100	95.163	Nomascus_leucogenys
MGP_CAROLIEiJ_G0014704	Smg7	70	92.276	ENSMEUG00000004681	SMG7	73	92.276	Notamacropus_eugenii
MGP_CAROLIEiJ_G0014704	Smg7	96	83.836	ENSOPRG00000013942	SMG7	96	83.653	Ochotona_princeps
MGP_CAROLIEiJ_G0014704	Smg7	100	95.387	ENSODEG00000010390	SMG7	100	95.735	Octodon_degus
MGP_CAROLIEiJ_G0014704	Smg7	99	64.377	ENSONIG00000000277	smg7	99	65.500	Oreochromis_niloticus
MGP_CAROLIEiJ_G0014704	Smg7	98	90.337	ENSOANG00000000994	SMG7	100	90.426	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0014704	Smg7	100	88.512	ENSOCUG00000005887	SMG7	94	88.947	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0014704	Smg7	99	63.040	ENSORLG00000007314	smg7	70	92.105	Oryzias_latipes
MGP_CAROLIEiJ_G0014704	Smg7	99	63.472	ENSORLG00020015779	smg7	99	63.385	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0014704	Smg7	99	64.884	ENSORLG00015012289	smg7	99	63.472	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0014704	Smg7	99	62.750	ENSOMEG00000002328	smg7	99	62.833	Oryzias_melastigma
MGP_CAROLIEiJ_G0014704	Smg7	97	95.100	ENSOGAG00000003107	SMG7	94	95.558	Otolemur_garnettii
MGP_CAROLIEiJ_G0014704	Smg7	100	93.995	ENSOARG00000001352	SMG7	98	94.865	Ovis_aries
MGP_CAROLIEiJ_G0014704	Smg7	100	94.811	ENSPPAG00000031619	SMG7	100	95.163	Pan_paniscus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.387	ENSPPRG00000011222	SMG7	100	94.987	Panthera_pardus
MGP_CAROLIEiJ_G0014704	Smg7	96	95.077	ENSPTIG00000007242	SMG7	100	91.354	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0014704	Smg7	100	94.811	ENSPTRG00000001764	SMG7	100	95.163	Pan_troglodytes
MGP_CAROLIEiJ_G0014704	Smg7	100	96.258	ENSPANG00000004520	SMG7	100	95.163	Papio_anubis
MGP_CAROLIEiJ_G0014704	Smg7	99	64.468	ENSPKIG00000007242	smg7	99	69.000	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0014704	Smg7	99	91.078	ENSPSIG00000012201	SMG7	99	90.813	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0014704	Smg7	71	42.604	ENSPMGG00000021833	smg7	89	54.000	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0014704	Smg7	100	97.561	ENSPEMG00000011315	Smg7	100	97.561	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0014704	Smg7	100	91.125	ENSPCIG00000003786	SMG7	100	91.213	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0014704	Smg7	99	62.841	ENSPFOG00000019219	smg7	99	63.201	Poecilia_formosa
MGP_CAROLIEiJ_G0014704	Smg7	99	64.089	ENSPLAG00000001446	smg7	99	64.261	Poecilia_latipinna
MGP_CAROLIEiJ_G0014704	Smg7	96	63.265	ENSPMEG00000005218	smg7	99	63.443	Poecilia_mexicana
MGP_CAROLIEiJ_G0014704	Smg7	87	61.144	ENSPREG00000019039	smg7	91	61.538	Poecilia_reticulata
MGP_CAROLIEiJ_G0014704	Smg7	100	94.899	ENSPPYG00000000427	SMG7	100	95.251	Pongo_abelii
MGP_CAROLIEiJ_G0014704	Smg7	95	83.948	ENSPCAG00000008360	SMG7	95	83.515	Procavia_capensis
MGP_CAROLIEiJ_G0014704	Smg7	100	96.084	ENSPCOG00000011996	SMG7	98	96.084	Propithecus_coquereli
MGP_CAROLIEiJ_G0014704	Smg7	92	89.101	ENSPVAG00000000851	SMG7	89	89.808	Pteropus_vampyrus
MGP_CAROLIEiJ_G0014704	Smg7	99	64.621	ENSPNYG00000007643	smg7	99	65.837	Pundamilia_nyererei
MGP_CAROLIEiJ_G0014704	Smg7	99	67.244	ENSPNAG00000011374	smg7	98	68.182	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0014704	Smg7	100	98.433	ENSRNOG00000027962	Smg7	100	98.422	Rattus_norvegicus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.822	ENSRBIG00000036316	SMG7	100	95.075	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0014704	Smg7	100	95.822	ENSRROG00000035719	SMG7	100	96.144	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0014704	Smg7	100	95.443	ENSSBOG00000023454	SMG7	100	95.706	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0014704	Smg7	100	90.957	ENSSHAG00000013147	SMG7	100	90.957	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0014704	Smg7	99	68.646	ENSSFOG00015017252	smg7	99	76.316	Scleropages_formosus
MGP_CAROLIEiJ_G0014704	Smg7	99	64.391	ENSSMAG00000006067	smg7	99	65.056	Scophthalmus_maximus
MGP_CAROLIEiJ_G0014704	Smg7	99	64.716	ENSSDUG00000017543	smg7	99	65.199	Seriola_dumerili
MGP_CAROLIEiJ_G0014704	Smg7	99	88.339	ENSSPUG00000002064	SMG7	99	88.163	Sphenodon_punctatus
MGP_CAROLIEiJ_G0014704	Smg7	100	65.398	ENSSPAG00000008733	smg7	100	65.744	Stegastes_partitus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.355	ENSSSCG00000015558	SMG7	100	95.706	Sus_scrofa
MGP_CAROLIEiJ_G0014704	Smg7	99	87.048	ENSTGUG00000003928	SMG7	100	87.401	Taeniopygia_guttata
MGP_CAROLIEiJ_G0014704	Smg7	99	63.751	ENSTNIG00000002802	smg7	99	63.835	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0014704	Smg7	77	94.492	ENSTBEG00000003220	SMG7	75	94.492	Tupaia_belangeri
MGP_CAROLIEiJ_G0014704	Smg7	96	95.068	ENSTTRG00000014778	SMG7	94	95.434	Tursiops_truncatus
MGP_CAROLIEiJ_G0014704	Smg7	96	91.689	ENSUAMG00000017473	SMG7	100	91.689	Ursus_americanus
MGP_CAROLIEiJ_G0014704	Smg7	96	95.177	ENSUMAG00000016389	SMG7	100	95.723	Ursus_maritimus
MGP_CAROLIEiJ_G0014704	Smg7	100	95.267	ENSVVUG00000008976	SMG7	100	95.793	Vulpes_vulpes
MGP_CAROLIEiJ_G0014704	Smg7	100	70.069	ENSXETG00000012528	smg7	100	70.121	Xenopus_tropicalis
MGP_CAROLIEiJ_G0014704	Smg7	99	64.114	ENSXMAG00000007123	smg7	99	64.660	Xiphophorus_maculatus