EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0014756 (Gene tree)
Gene ID: 110289303
Gene Symbol: Rc3h1
Alias: 5730557L09Rik|roquin
Full Name: ring finger and CCCH-type domains 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 38960 bases
Position: chr1:151529363-151568322
Accession: 110289303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0020681	zf-CCCH	PF00642.24	0.00036	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0020682	-	656	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0020681	-	3648	-	MGP_CAROLIEiJ_P0020681	1129 (aa)	XP_021011117	UPI000A318DAE

Gene Model

Click here to download MGP_CAROLIEiJ_G0014756's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0014756's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0014756	Rc3h1	92	52.866	MGP_CAROLIEiJ_G0023516	Rc3h2	98	80.892

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.380	ENSG00000135870	RC3H1	100	93.822	Homo_sapiens
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.640	ENSAMEG00000015657	RC3H1	100	93.640	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0014756	Rc3h1	100	85.764	ENSAPLG00000005341	RC3H1	100	85.764	Anas_platyrhynchos
MGP_CAROLIEiJ_G0014756	Rc3h1	100	83.027	ENSACAG00000015271	RC3H1	100	83.202	Anolis_carolinensis
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.380	ENSANAG00000036716	RC3H1	100	93.910	Aotus_nancymaae
MGP_CAROLIEiJ_G0014756	Rc3h1	100	91.792	ENSBTAG00000052708	RC3H1	100	92.233	Bos_taurus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.292	ENSCJAG00000009106	RC3H1	100	93.822	Callithrix_jacchus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.286	ENSCAFG00000014434	RC3H1	100	93.728	Canis_familiaris
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.204	ENSCAFG00020017112	RC3H1	99	97.978	Canis_lupus_dingo
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.049	ENSCHIG00000002873	RC3H1	100	92.491	Capra_hircus
MGP_CAROLIEiJ_G0014756	Rc3h1	99	92.049	ENSTSYG00000003913	RC3H1	99	92.403	Carlito_syrichta
MGP_CAROLIEiJ_G0014756	Rc3h1	100	89.753	ENSCPOG00000004349	RC3H1	100	89.753	Cavia_porcellus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	91.703	ENSCCAG00000025652	RC3H1	100	92.233	Cebus_capucinus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.469	ENSCATG00000033497	RC3H1	100	93.910	Cercocebus_atys
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.056	ENSCLAG00000011267	RC3H1	100	92.410	Chinchilla_lanigera
MGP_CAROLIEiJ_G0014756	Rc3h1	96	93.554	ENSCSAG00000011823	RC3H1	85	94.015	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	87.709	ENSCPBG00000014670	RC3H1	100	87.182	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.474	ENSCANG00000032120	RC3H1	100	93.915	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	96.018	ENSCGRG00001020812	Rc3h1	100	96.018	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0014756	Rc3h1	100	96.018	ENSCGRG00000011952	Rc3h1	100	96.018	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0014756	Rc3h1	55	90.032	ENSDNOG00000011494	RC3H1	99	90.836	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.668	ENSDORG00000004855	Rc3h1	100	92.668	Dipodomys_ordii
MGP_CAROLIEiJ_G0014756	Rc3h1	81	94.358	ENSETEG00000012064	RC3H1	87	93.990	Echinops_telfairi
MGP_CAROLIEiJ_G0014756	Rc3h1	100	91.254	ENSEASG00005017000	RC3H1	100	92.049	Equus_asinus_asinus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	91.078	ENSECAG00000021208	RC3H1	100	91.873	Equus_caballus
MGP_CAROLIEiJ_G0014756	Rc3h1	89	81.818	ENSEEUG00000014861	RC3H1	93	81.818	Erinaceus_europaeus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.469	ENSFCAG00000014924	RC3H1	100	93.910	Felis_catus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	85.127	ENSFALG00000002947	RC3H1	100	84.952	Ficedula_albicollis
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.498	ENSFDAG00000013303	RC3H1	100	92.763	Fukomys_damarensis
MGP_CAROLIEiJ_G0014756	Rc3h1	100	85.062	ENSGALG00000004587	RC3H1	100	84.974	Gallus_gallus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	86.140	ENSGAGG00000018194	RC3H1	100	85.877	Gopherus_agassizii
MGP_CAROLIEiJ_G0014756	Rc3h1	100	86.719	ENSGGOG00000005735	RC3H1	100	86.983	Gorilla_gorilla
MGP_CAROLIEiJ_G0014756	Rc3h1	88	86.468	ENSHGLG00000004183	-	99	86.557	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0014756	Rc3h1	100	91.703	ENSHGLG00100008577	RC3H1	100	92.056	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.021	ENSSTOG00000016033	RC3H1	100	93.551	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.750	ENSJJAG00000018915	Rc3h1	100	92.838	Jaculus_jaculus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	73.758	ENSLACG00000016186	RC3H1	100	77.521	Latimeria_chalumnae
MGP_CAROLIEiJ_G0014756	Rc3h1	97	93.528	ENSLAFG00000004367	RC3H1	100	93.984	Loxodonta_africana
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.380	ENSMFAG00000033725	RC3H1	100	93.822	Macaca_fascicularis
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.469	ENSMMUG00000000630	RC3H1	100	93.910	Macaca_mulatta
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.469	ENSMNEG00000035968	RC3H1	100	93.910	Macaca_nemestrina
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.380	ENSMLEG00000037455	RC3H1	100	93.822	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0014756	Rc3h1	88	96.263	ENSMAUG00000020864	Rc3h1	93	96.263	Mesocricetus_auratus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.198	ENSMICG00000003000	RC3H1	100	93.640	Microcebus_murinus
MGP_CAROLIEiJ_G0014756	Rc3h1	93	95.632	ENSMOCG00000016587	Rc3h1	98	95.632	Microtus_ochrogaster
MGP_CAROLIEiJ_G0014756	Rc3h1	100	89.683	ENSMODG00000004289	RC3H1	100	89.497	Monodelphis_domestica
MGP_CAROLIEiJ_G0014756	Rc3h1	100	99.115	ENSMUSG00000040423	Rc3h1	100	99.115	Mus_musculus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	98.850	MGP_PahariEiJ_G0027992	Rc3h1	100	98.850	Mus_pahari
MGP_CAROLIEiJ_G0014756	Rc3h1	100	98.761	MGP_SPRETEiJ_G0015563	Rc3h1	100	98.761	Mus_spretus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.551	ENSMPUG00000004747	RC3H1	100	93.375	Mustela_putorius_furo
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.131	ENSMLUG00000011127	RC3H1	100	92.573	Myotis_lucifugus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	95.487	ENSNGAG00000011135	Rc3h1	100	95.487	Nannospalax_galili
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.469	ENSNLEG00000015327	RC3H1	100	93.910	Nomascus_leucogenys
MGP_CAROLIEiJ_G0014756	Rc3h1	99	80.531	ENSOPRG00000013068	RC3H1	99	80.354	Ochotona_princeps
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.586	ENSODEG00000014185	RC3H1	100	92.586	Octodon_degus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	88.821	ENSOANG00000000924	RC3H1	100	88.811	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0014756	Rc3h1	99	92.921	ENSOCUG00000004930	RC3H1	98	93.369	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	86.508	ENSOGAG00000004044	RC3H1	100	86.508	Otolemur_garnettii
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.281	ENSOARG00000013011	RC3H1	100	92.719	Ovis_aries
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.386	ENSPPAG00000039253	RC3H1	100	93.827	Pan_paniscus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.756	ENSPPRG00000009007	RC3H1	100	93.198	Panthera_pardus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.052	ENSPTIG00000015326	RC3H1	100	93.404	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.386	ENSPTRG00000001702	RC3H1	100	93.827	Pan_troglodytes
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.380	ENSPANG00000008886	RC3H1	100	93.822	Papio_anubis
MGP_CAROLIEiJ_G0014756	Rc3h1	100	87.105	ENSPSIG00000016181	RC3H1	100	87.182	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0014756	Rc3h1	100	95.575	ENSPEMG00000011966	Rc3h1	100	95.664	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0014756	Rc3h1	70	92.902	ENSPCIG00000002058	RC3H1	95	98.206	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	90.644	ENSPPYG00000000490	RC3H1	98	93.206	Pongo_abelii
MGP_CAROLIEiJ_G0014756	Rc3h1	81	97.368	ENSPCAG00000010775	RC3H1	87	97.368	Procavia_capensis
MGP_CAROLIEiJ_G0014756	Rc3h1	83	91.765	ENSPCOG00000021795	RC3H1	96	92.299	Propithecus_coquereli
MGP_CAROLIEiJ_G0014756	Rc3h1	100	84.806	ENSPVAG00000007593	RC3H1	100	85.159	Pteropus_vampyrus
MGP_CAROLIEiJ_G0014756	Rc3h1	97	61.062	ENSPNAG00000023439	rc3h1a	95	90.766	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.563	ENSRBIG00000037743	RC3H1	100	94.004	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.557	ENSRROG00000036546	RC3H1	100	93.998	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0014756	Rc3h1	93	84.201	ENSSBOG00000010664	RC3H1	100	87.973	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0014756	Rc3h1	100	88.987	ENSSHAG00000007589	RC3H1	100	88.722	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0014756	Rc3h1	87	86.712	ENSSARG00000004660	RC3H1	86	86.712	Sorex_araneus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	82.121	ENSSPUG00000018472	RC3H1	100	82.353	Sphenodon_punctatus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.728	ENSSSCG00000015498	RC3H1	100	94.170	Sus_scrofa
MGP_CAROLIEiJ_G0014756	Rc3h1	100	85.752	ENSTGUG00000004090	RC3H1	100	85.752	Taeniopygia_guttata
MGP_CAROLIEiJ_G0014756	Rc3h1	89	94.687	ENSTBEG00000005015	RC3H1	88	94.918	Tupaia_belangeri
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.070	ENSTTRG00000008572	RC3H1	100	92.952	Tursiops_truncatus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.286	ENSUAMG00000019525	RC3H1	100	93.286	Ursus_americanus
MGP_CAROLIEiJ_G0014756	Rc3h1	100	93.733	ENSUMAG00000020087	RC3H1	100	93.733	Ursus_maritimus
MGP_CAROLIEiJ_G0014756	Rc3h1	91	98.423	ENSVPAG00000002591	RC3H1	92	98.423	Vicugna_pacos
MGP_CAROLIEiJ_G0014756	Rc3h1	100	92.958	ENSVVUG00000014201	RC3H1	100	93.398	Vulpes_vulpes
MGP_CAROLIEiJ_G0014756	Rc3h1	100	76.870	ENSXETG00000020030	rc3h1	100	77.043	Xenopus_tropicalis