EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0015508 (Gene tree)
Gene ID: 110303053
Gene Symbol: Rrp1
Alias: NNP-1|Nnp1
Full Name: ribosomal RNA processing 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 12316 bases
Position: chr10:72451623-72463938
Accession: 110303053
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0023663	Nop52	PF05997.12	5.7e-69	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0023663	-	1985	XM_021173954	MGP_CAROLIEiJ_P0023663	494 (aa)	XP_021029613	UPI000A315AFB

Gene Model

Click here to download MGP_CAROLIEiJ_G0015508's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0015508's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0015508	Rrp1	57	51.739	MGP_CAROLIEiJ_G0021376	Rrp1b	53	63.492

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0015508	Rrp1	96	63.136	ENSG00000160214	RRP1	96	86.047	Homo_sapiens
MGP_CAROLIEiJ_G0015508	Rrp1	99	57.677	ENSAMEG00000011448	RRP1	55	78.988	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0015508	Rrp1	69	42.647	ENSACIG00000019121	rrp1	81	38.326	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0015508	Rrp1	76	54.032	ENSAOCG00000017894	-	71	51.880	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0015508	Rrp1	89	72.069	ENSANAG00000037815	RRP1	99	57.229	Aotus_nancymaae
MGP_CAROLIEiJ_G0015508	Rrp1	80	81.659	ENSBTAG00000003981	RRP1	98	76.772	Bos_taurus
MGP_CAROLIEiJ_G0015508	Rrp1	51	31.474	WBGene00008151	C47E12.7	57	31.799	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0015508	Rrp1	89	64.853	ENSCJAG00000043205	RRP1	81	63.100	Callithrix_jacchus
MGP_CAROLIEiJ_G0015508	Rrp1	99	60.121	ENSCAFG00000010646	RRP1	99	58.990	Canis_familiaris
MGP_CAROLIEiJ_G0015508	Rrp1	99	57.143	ENSCAFG00020018979	RRP1	99	58.431	Canis_lupus_dingo
MGP_CAROLIEiJ_G0015508	Rrp1	80	82.096	ENSCHIG00000020948	RRP1	93	81.435	Capra_hircus
MGP_CAROLIEiJ_G0015508	Rrp1	94	41.753	ENSCHIG00000021519	RRP1B	54	53.750	Capra_hircus
MGP_CAROLIEiJ_G0015508	Rrp1	99	55.882	ENSTSYG00000012831	RRP1	99	57.255	Carlito_syrichta
MGP_CAROLIEiJ_G0015508	Rrp1	82	56.543	ENSCAPG00000008576	RRP1	92	55.582	Cavia_aperea
MGP_CAROLIEiJ_G0015508	Rrp1	98	58.200	ENSCPOG00000038986	RRP1	98	59.200	Cavia_porcellus
MGP_CAROLIEiJ_G0015508	Rrp1	81	40.695	ENSCPOG00000002396	RRP1B	55	52.766	Cavia_porcellus
MGP_CAROLIEiJ_G0015508	Rrp1	99	61.963	ENSCCAG00000029828	RRP1	99	59.615	Cebus_capucinus
MGP_CAROLIEiJ_G0015508	Rrp1	64	84.120	ENSCATG00000015632	RRP1	90	81.048	Cercocebus_atys
MGP_CAROLIEiJ_G0015508	Rrp1	96	61.845	ENSCLAG00000011639	RRP1	98	60.600	Chinchilla_lanigera
MGP_CAROLIEiJ_G0015508	Rrp1	78	67.098	ENSCSAG00000007936	RRP1	100	67.098	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0015508	Rrp1	80	49.873	ENSCPBG00000010310	RRP1B	52	59.813	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0015508	Rrp1	56	40.385	ENSCING00000003304	-	70	40.385	Ciona_intestinalis
MGP_CAROLIEiJ_G0015508	Rrp1	90	57.753	ENSCANG00000042611	RRP1	83	56.696	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0015508	Rrp1	60	54.852	ENSCGRG00001023882	-	55	66.667	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0015508	Rrp1	98	74.741	ENSCGRG00001011920	Rrp1	97	75.155	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0015508	Rrp1	98	74.741	ENSCGRG00000008915	Rrp1	97	75.155	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0015508	Rrp1	84	43.810	ENSCSEG00000020711	-	64	51.331	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0015508	Rrp1	63	58.333	ENSCVAG00000017568	-	88	42.543	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0015508	Rrp1	100	53.167	ENSDNOG00000019880	RRP1	99	56.455	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0015508	Rrp1	76	80.711	ENSDORG00000002104	Rrp1	100	61.123	Dipodomys_ordii
MGP_CAROLIEiJ_G0015508	Rrp1	57	75.758	ENSETEG00000002963	-	70	75.758	Echinops_telfairi
MGP_CAROLIEiJ_G0015508	Rrp1	62	80.349	ENSEASG00005001673	RRP1	99	58.350	Equus_asinus_asinus
MGP_CAROLIEiJ_G0015508	Rrp1	62	80.349	ENSECAG00000015703	RRP1	99	58.350	Equus_caballus
MGP_CAROLIEiJ_G0015508	Rrp1	80	43.038	ENSELUG00000015885	-	92	42.785	Esox_lucius
MGP_CAROLIEiJ_G0015508	Rrp1	69	56.735	ENSFCAG00000010272	RRP1B	50	57.500	Felis_catus
MGP_CAROLIEiJ_G0015508	Rrp1	78	82.906	ENSFCAG00000008434	RRP1	98	80.242	Felis_catus
MGP_CAROLIEiJ_G0015508	Rrp1	89	80.408	ENSFDAG00000013728	RRP1	98	57.570	Fukomys_damarensis
MGP_CAROLIEiJ_G0015508	Rrp1	75	59.664	ENSGALG00000035696	RRP1B	53	44.372	Gallus_gallus
MGP_CAROLIEiJ_G0015508	Rrp1	80	43.687	ENSGACG00000001438	rrp1	52	41.919	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0015508	Rrp1	96	63.136	ENSGGOG00000000173	RRP1	100	58.476	Gorilla_gorilla
MGP_CAROLIEiJ_G0015508	Rrp1	72	53.947	ENSHGLG00000004968	RRP1B	60	53.947	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0015508	Rrp1	76	81.545	ENSHGLG00000017085	RRP1	94	59.000	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0015508	Rrp1	63	46.703	ENSHGLG00100002232	RRP1B	50	46.703	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0015508	Rrp1	81	41.935	ENSIPUG00000000673	-	69	42.145	Ictalurus_punctatus
MGP_CAROLIEiJ_G0015508	Rrp1	95	60.000	ENSSTOG00000011116	RRP1	96	80.859	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0015508	Rrp1	98	65.918	ENSJJAG00000018886	Rrp1	98	66.122	Jaculus_jaculus
MGP_CAROLIEiJ_G0015508	Rrp1	79	44.845	ENSKMAG00000005539	rrp1	51	45.361	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0015508	Rrp1	62	60.000	ENSLBEG00000021417	RRP1	99	40.476	Labrus_bergylta
MGP_CAROLIEiJ_G0015508	Rrp1	94	43.590	ENSLAFG00000000766	RRP1B	99	43.590	Loxodonta_africana
MGP_CAROLIEiJ_G0015508	Rrp1	96	67.931	ENSLAFG00000022901	RRP1	96	74.219	Loxodonta_africana
MGP_CAROLIEiJ_G0015508	Rrp1	98	59.339	ENSMFAG00000003202	RRP1	99	58.077	Macaca_fascicularis
MGP_CAROLIEiJ_G0015508	Rrp1	98	59.533	ENSMMUG00000012304	RRP1	99	58.077	Macaca_mulatta
MGP_CAROLIEiJ_G0015508	Rrp1	98	59.339	ENSMNEG00000031210	RRP1	99	58.269	Macaca_nemestrina
MGP_CAROLIEiJ_G0015508	Rrp1	75	65.591	ENSMLEG00000037797	RRP1	99	55.579	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0015508	Rrp1	74	59.746	ENSMGAG00000014591	RRP1B	53	43.991	Meleagris_gallopavo
MGP_CAROLIEiJ_G0015508	Rrp1	83	73.563	ENSMAUG00000017653	Rrp1	98	61.807	Mesocricetus_auratus
MGP_CAROLIEiJ_G0015508	Rrp1	98	62.041	ENSMICG00000004700	RRP1	98	61.336	Microcebus_murinus
MGP_CAROLIEiJ_G0015508	Rrp1	99	66.000	ENSMOCG00000015687	Rrp1	99	63.089	Microtus_ochrogaster
MGP_CAROLIEiJ_G0015508	Rrp1	83	38.795	ENSMMOG00000019175	rrp1	86	41.206	Mola_mola
MGP_CAROLIEiJ_G0015508	Rrp1	80	42.929	ENSMALG00000010310	rrp1	78	58.333	Monopterus_albus
MGP_CAROLIEiJ_G0015508	Rrp1	56	53.043	ENSMUSG00000058392	Rrp1b	53	65.079	Mus_musculus
MGP_CAROLIEiJ_G0015508	Rrp1	100	96.761	ENSMUSG00000061032	Rrp1	100	96.761	Mus_musculus
MGP_CAROLIEiJ_G0015508	Rrp1	100	91.935	MGP_PahariEiJ_G0030921	Rrp1	100	92.944	Mus_pahari
MGP_CAROLIEiJ_G0015508	Rrp1	57	53.478	MGP_PahariEiJ_G0023695	Rrp1b	53	63.492	Mus_pahari
MGP_CAROLIEiJ_G0015508	Rrp1	57	53.913	MGP_SPRETEiJ_G0022290	Rrp1b	53	65.079	Mus_spretus
MGP_CAROLIEiJ_G0015508	Rrp1	100	96.761	MGP_SPRETEiJ_G0016321	Rrp1	100	96.761	Mus_spretus
MGP_CAROLIEiJ_G0015508	Rrp1	98	59.834	ENSMPUG00000009826	RRP1	99	59.184	Mustela_putorius_furo
MGP_CAROLIEiJ_G0015508	Rrp1	99	60.904	ENSMLUG00000017788	RRP1	100	61.100	Myotis_lucifugus
MGP_CAROLIEiJ_G0015508	Rrp1	98	56.162	ENSNGAG00000022344	Rrp1	99	55.578	Nannospalax_galili
MGP_CAROLIEiJ_G0015508	Rrp1	96	62.395	ENSNLEG00000034734	RRP1	99	58.269	Nomascus_leucogenys
MGP_CAROLIEiJ_G0015508	Rrp1	65	72.650	ENSOPRG00000001319	RRP1	97	69.485	Ochotona_princeps
MGP_CAROLIEiJ_G0015508	Rrp1	61	51.667	ENSONIG00000004264	rrp1	56	52.000	Oreochromis_niloticus
MGP_CAROLIEiJ_G0015508	Rrp1	75	60.211	ENSOANG00000006472	-	94	61.654	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0015508	Rrp1	90	61.211	ENSOGAG00000006105	RRP1	98	59.796	Otolemur_garnettii
MGP_CAROLIEiJ_G0015508	Rrp1	80	82.533	ENSOARG00000011434	RRP1	93	81.857	Ovis_aries
MGP_CAROLIEiJ_G0015508	Rrp1	96	63.347	ENSPPAG00000029050	RRP1	99	60.155	Pan_paniscus
MGP_CAROLIEiJ_G0015508	Rrp1	60	56.327	ENSPPRG00000010356	RRP1B	50	57.083	Panthera_pardus
MGP_CAROLIEiJ_G0015508	Rrp1	79	82.479	ENSPPRG00000010656	RRP1	94	58.282	Panthera_pardus
MGP_CAROLIEiJ_G0015508	Rrp1	73	64.767	ENSPTIG00000019473	RRP1	87	47.404	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0015508	Rrp1	60	57.143	ENSPTIG00000016894	RRP1B	55	57.143	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0015508	Rrp1	96	63.559	ENSPTRG00000013962	RRP1	99	59.615	Pan_troglodytes
MGP_CAROLIEiJ_G0015508	Rrp1	92	62.775	ENSPANG00000015097	RRP1	99	59.188	Papio_anubis
MGP_CAROLIEiJ_G0015508	Rrp1	83	47.343	ENSPSIG00000008152	RRP1B	50	59.756	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0015508	Rrp1	73	50.000	ENSPMGG00000007512	-	79	50.000	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0015508	Rrp1	82	89.879	ENSPEMG00000018421	Rrp1	98	73.566	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0015508	Rrp1	73	64.257	ENSPCIG00000015523	-	68	62.992	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0015508	Rrp1	96	62.368	ENSPPYG00000011474	RRP1	99	59.231	Pongo_abelii
MGP_CAROLIEiJ_G0015508	Rrp1	98	58.765	ENSPCOG00000017706	RRP1	98	59.237	Propithecus_coquereli
MGP_CAROLIEiJ_G0015508	Rrp1	69	56.429	ENSPVAG00000009925	-	77	56.429	Pteropus_vampyrus
MGP_CAROLIEiJ_G0015508	Rrp1	85	91.213	ENSRNOG00000001203	Rrp1	100	76.566	Rattus_norvegicus
MGP_CAROLIEiJ_G0015508	Rrp1	98	57.031	ENSRBIG00000032082	RRP1	99	59.266	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0015508	Rrp1	98	57.588	ENSRROG00000039799	RRP1	99	58.269	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0015508	Rrp1	89	75.362	ENSSBOG00000034689	RRP1	99	58.350	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0015508	Rrp1	58	64.423	ENSSHAG00000010304	-	89	60.173	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0015508	Rrp1	82	43.382	ENSSMAG00000016847	-	86	43.137	Scophthalmus_maximus
MGP_CAROLIEiJ_G0015508	Rrp1	72	81.197	ENSSSCG00000037061	RRP1	98	77.647	Sus_scrofa
MGP_CAROLIEiJ_G0015508	Rrp1	54	60.396	ENSTGUG00000005926	RRP1B	54	60.099	Taeniopygia_guttata
MGP_CAROLIEiJ_G0015508	Rrp1	80	43.434	ENSTRUG00000017592	rrp1	97	53.036	Takifugu_rubripes
MGP_CAROLIEiJ_G0015508	Rrp1	58	56.667	ENSTNIG00000005053	rrp1	54	43.609	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0015508	Rrp1	59	69.032	ENSTBEG00000001260	-	58	68.276	Tupaia_belangeri
MGP_CAROLIEiJ_G0015508	Rrp1	50	53.846	ENSTTRG00000000723	RRP1B	55	54.583	Tursiops_truncatus
MGP_CAROLIEiJ_G0015508	Rrp1	65	72.059	ENSTTRG00000011162	RRP1	83	72.059	Tursiops_truncatus
MGP_CAROLIEiJ_G0015508	Rrp1	75	48.843	ENSUAMG00000014189	-	97	74.453	Ursus_americanus
MGP_CAROLIEiJ_G0015508	Rrp1	71	49.042	ENSUMAG00000025510	RRP1B	56	56.158	Ursus_maritimus
MGP_CAROLIEiJ_G0015508	Rrp1	91	55.342	ENSUMAG00000025507	RRP1	98	77.436	Ursus_maritimus
MGP_CAROLIEiJ_G0015508	Rrp1	56	86.170	ENSVVUG00000024498	-	78	49.459	Vulpes_vulpes
MGP_CAROLIEiJ_G0015508	Rrp1	73	52.708	ENSXETG00000013683	rrp1b	63	54.651	Xenopus_tropicalis