EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0015551 (Gene tree)
Gene ID: 110303249
Gene Symbol: R3hdm4
Alias: C030046I01Rik
Full Name: R3H domain containing 4
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 7250 bases
Position: chr10:73891197-73898446
Accession: 110303249
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0023794	R3H	PF01424.22	1.8e-06	1	1
MGP_CAROLIEiJ_P0023795	R3H	PF01424.22	1.8e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0023795	-	1710	-	MGP_CAROLIEiJ_P0023795	263 (aa)	-	UPI000A317C1B
MGP_CAROLIEiJ_T0023794	-	1819	XM_021174294	MGP_CAROLIEiJ_P0023794	263 (aa)	XP_021029953	UPI000A317C1B

Gene Model

Click here to download MGP_CAROLIEiJ_G0015551's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0015551's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0015551	R3hdm4	100	85.019	ENSG00000198858	R3HDM4	99	83.895	Homo_sapiens
MGP_CAROLIEiJ_G0015551	R3hdm4	92	86.777	ENSAMEG00000003001	R3HDM4	99	85.537	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0015551	R3hdm4	89	55.745	ENSACIG00000004672	r3hdm4	91	54.894	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0015551	R3hdm4	88	53.648	ENSATEG00000015913	r3hdm4	91	53.219	Anabas_testudineus
MGP_CAROLIEiJ_G0015551	R3hdm4	92	87.603	ENSANAG00000029748	R3HDM4	99	86.777	Aotus_nancymaae
MGP_CAROLIEiJ_G0015551	R3hdm4	97	83.594	ENSBTAG00000046406	R3HDM4	99	80.812	Bos_taurus
MGP_CAROLIEiJ_G0015551	R3hdm4	92	87.705	ENSCJAG00000020114	R3HDM4	93	85.600	Callithrix_jacchus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	81.550	ENSCAFG00000019665	R3HDM4	99	80.443	Canis_familiaris
MGP_CAROLIEiJ_G0015551	R3hdm4	100	81.181	ENSCAFG00020016880	R3HDM4	99	80.074	Canis_lupus_dingo
MGP_CAROLIEiJ_G0015551	R3hdm4	100	82.657	ENSCHIG00000020110	R3HDM4	97	83.984	Capra_hircus
MGP_CAROLIEiJ_G0015551	R3hdm4	95	84.462	ENSCCAG00000019955	R3HDM4	91	83.665	Cebus_capucinus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	83.271	ENSCATG00000037269	R3HDM4	99	82.900	Cercocebus_atys
MGP_CAROLIEiJ_G0015551	R3hdm4	92	90.496	ENSCLAG00000007094	R3HDM4	99	89.256	Chinchilla_lanigera
MGP_CAROLIEiJ_G0015551	R3hdm4	100	84.644	ENSCSAG00000012574	R3HDM4	99	83.521	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0015551	R3hdm4	99	66.540	ENSCPBG00000009805	R3HDM4	99	66.160	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0015551	R3hdm4	96	85.827	ENSCANG00000040439	R3HDM4	89	84.646	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	92.453	ENSCGRG00001021650	R3hdm4	100	93.208	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0015551	R3hdm4	100	92.453	ENSCGRG00000013169	R3hdm4	100	93.208	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0015551	R3hdm4	89	52.542	ENSCSEG00000018211	r3hdm4	91	51.064	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0015551	R3hdm4	89	55.319	ENSCVAG00000017127	r3hdm4	91	55.319	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0015551	R3hdm4	92	89.344	ENSDORG00000006605	R3hdm4	99	89.344	Dipodomys_ordii
MGP_CAROLIEiJ_G0015551	R3hdm4	94	87.149	ENSEASG00005021556	R3HDM4	93	83.922	Equus_asinus_asinus
MGP_CAROLIEiJ_G0015551	R3hdm4	92	88.525	ENSECAG00000000003	R3HDM4	99	83.704	Equus_caballus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	84.015	ENSFCAG00000042437	R3HDM4	99	82.900	Felis_catus
MGP_CAROLIEiJ_G0015551	R3hdm4	91	67.635	ENSFALG00000013938	R3HDM4	98	68.067	Ficedula_albicollis
MGP_CAROLIEiJ_G0015551	R3hdm4	92	88.889	ENSFDAG00000017040	R3HDM4	99	87.654	Fukomys_damarensis
MGP_CAROLIEiJ_G0015551	R3hdm4	89	55.319	ENSFHEG00000017636	r3hdm4	91	54.468	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0015551	R3hdm4	89	53.219	ENSGMOG00000001231	r3hdm4	95	53.419	Gadus_morhua
MGP_CAROLIEiJ_G0015551	R3hdm4	90	65.000	ENSGALG00000001998	R3HDM4	90	64.583	Gallus_gallus
MGP_CAROLIEiJ_G0015551	R3hdm4	99	53.232	ENSGAFG00000004173	r3hdm4	99	52.852	Gambusia_affinis
MGP_CAROLIEiJ_G0015551	R3hdm4	99	65.399	ENSGAGG00000019698	R3HDM4	99	65.019	Gopherus_agassizii
MGP_CAROLIEiJ_G0015551	R3hdm4	92	88.017	ENSGGOG00000008040	R3HDM4	99	86.777	Gorilla_gorilla
MGP_CAROLIEiJ_G0015551	R3hdm4	99	50.951	ENSHBUG00000014810	r3hdm4	91	54.894	Haplochromis_burtoni
MGP_CAROLIEiJ_G0015551	R3hdm4	100	84.701	ENSHGLG00000016194	R3HDM4	99	83.582	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0015551	R3hdm4	89	55.556	ENSHCOG00000008422	r3hdm4	91	55.319	Hippocampus_comes
MGP_CAROLIEiJ_G0015551	R3hdm4	89	53.390	ENSIPUG00000006716	r3hdm4	91	52.340	Ictalurus_punctatus
MGP_CAROLIEiJ_G0015551	R3hdm4	92	85.950	ENSSTOG00000023015	R3HDM4	99	86.777	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	86.567	ENSJJAG00000012475	R3hdm4	100	85.075	Jaculus_jaculus
MGP_CAROLIEiJ_G0015551	R3hdm4	89	55.319	ENSKMAG00000005853	r3hdm4	91	54.468	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0015551	R3hdm4	89	54.506	ENSLBEG00000000730	r3hdm4	91	54.274	Labrus_bergylta
MGP_CAROLIEiJ_G0015551	R3hdm4	99	57.414	ENSLACG00000016445	R3HDM4	99	57.414	Latimeria_chalumnae
MGP_CAROLIEiJ_G0015551	R3hdm4	89	57.627	ENSLOCG00000002423	r3hdm4	99	53.992	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0015551	R3hdm4	98	83.398	ENSLAFG00000017796	R3HDM4	100	82.239	Loxodonta_africana
MGP_CAROLIEiJ_G0015551	R3hdm4	100	84.644	ENSMFAG00000044131	R3HDM4	99	83.521	Macaca_fascicularis
MGP_CAROLIEiJ_G0015551	R3hdm4	100	78.947	ENSMMUG00000009682	R3HDM4	99	77.820	Macaca_mulatta
MGP_CAROLIEiJ_G0015551	R3hdm4	92	88.017	ENSMNEG00000044115	R3HDM4	98	86.777	Macaca_nemestrina
MGP_CAROLIEiJ_G0015551	R3hdm4	96	83.203	ENSMLEG00000035693	R3HDM4	94	82.812	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0015551	R3hdm4	77	56.650	ENSMAMG00000005652	r3hdm4	82	56.158	Mastacembelus_armatus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	90.189	ENSMAUG00000010611	R3hdm4	100	90.943	Mesocricetus_auratus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	84.387	ENSMICG00000010124	R3HDM4	99	83.271	Microcebus_murinus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	91.255	ENSMOCG00000002646	R3hdm4	100	91.255	Microtus_ochrogaster
MGP_CAROLIEiJ_G0015551	R3hdm4	89	54.894	ENSMMOG00000008253	r3hdm4	91	54.043	Mola_mola
MGP_CAROLIEiJ_G0015551	R3hdm4	87	65.368	ENSMODG00000005698	R3HDM4	99	64.935	Monodelphis_domestica
MGP_CAROLIEiJ_G0015551	R3hdm4	89	53.617	ENSMALG00000018856	r3hdm4	90	53.617	Monopterus_albus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	98.479	ENSMUSG00000035781	R3hdm4	100	98.479	Mus_musculus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	98.099	MGP_PahariEiJ_G0030964	R3hdm4	100	98.099	Mus_pahari
MGP_CAROLIEiJ_G0015551	R3hdm4	100	98.099	MGP_SPRETEiJ_G0016369	-	84	98.099	Mus_spretus
MGP_CAROLIEiJ_G0015551	R3hdm4	97	82.946	ENSMPUG00000009394	R3HDM4	96	81.783	Mustela_putorius_furo
MGP_CAROLIEiJ_G0015551	R3hdm4	99	50.570	ENSNBRG00000004438	r3hdm4	99	50.951	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0015551	R3hdm4	86	86.580	ENSNLEG00000001022	R3HDM4	100	83.550	Nomascus_leucogenys
MGP_CAROLIEiJ_G0015551	R3hdm4	89	64.407	ENSMEUG00000011020	R3HDM4	98	63.136	Notamacropus_eugenii
MGP_CAROLIEiJ_G0015551	R3hdm4	100	84.701	ENSODEG00000011745	R3HDM4	99	83.582	Octodon_degus
MGP_CAROLIEiJ_G0015551	R3hdm4	89	54.468	ENSONIG00000012675	r3hdm4	84	54.894	Oreochromis_niloticus
MGP_CAROLIEiJ_G0015551	R3hdm4	89	55.745	ENSOMEG00000003005	r3hdm4	91	54.894	Oryzias_melastigma
MGP_CAROLIEiJ_G0015551	R3hdm4	99	82.890	ENSOGAG00000025656	R3HDM4	99	82.890	Otolemur_garnettii
MGP_CAROLIEiJ_G0015551	R3hdm4	92	87.603	ENSOARG00000009945	R3HDM4	99	86.364	Ovis_aries
MGP_CAROLIEiJ_G0015551	R3hdm4	92	88.430	ENSPPAG00000042371	R3HDM4	99	87.190	Pan_paniscus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	84.644	ENSPANG00000015203	R3HDM4	99	83.521	Papio_anubis
MGP_CAROLIEiJ_G0015551	R3hdm4	86	56.140	ENSPKIG00000007421	r3hdm4	89	53.419	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0015551	R3hdm4	89	52.991	ENSPMGG00000020467	r3hdm4	90	51.489	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0015551	R3hdm4	92	95.021	ENSPEMG00000008365	Tmem259	99	95.021	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0015551	R3hdm4	89	56.170	ENSPFOG00000003199	r3hdm4	91	54.894	Poecilia_formosa
MGP_CAROLIEiJ_G0015551	R3hdm4	89	56.170	ENSPMEG00000014183	r3hdm4	91	54.894	Poecilia_mexicana
MGP_CAROLIEiJ_G0015551	R3hdm4	99	53.232	ENSPREG00000010709	r3hdm4	99	52.091	Poecilia_reticulata
MGP_CAROLIEiJ_G0015551	R3hdm4	100	82.397	ENSPPYG00000009297	R3HDM4	99	81.273	Pongo_abelii
MGP_CAROLIEiJ_G0015551	R3hdm4	57	86.755	ENSPCAG00000010997	R3HDM4	55	82.119	Procavia_capensis
MGP_CAROLIEiJ_G0015551	R3hdm4	100	83.271	ENSPCOG00000016785	R3HDM4	99	82.156	Propithecus_coquereli
MGP_CAROLIEiJ_G0015551	R3hdm4	99	50.951	ENSPNYG00000017489	r3hdm4	91	54.894	Pundamilia_nyererei
MGP_CAROLIEiJ_G0015551	R3hdm4	100	95.437	ENSRNOG00000011489	R3hdm4	100	95.437	Rattus_norvegicus
MGP_CAROLIEiJ_G0015551	R3hdm4	92	88.843	ENSRROG00000028842	R3HDM4	90	87.603	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0015551	R3hdm4	93	84.000	ENSSBOG00000019298	R3HDM4	73	83.200	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0015551	R3hdm4	55	69.655	ENSSHAG00000003036	-	99	68.966	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0015551	R3hdm4	89	53.191	ENSSFOG00015020574	r3hdm4	86	51.915	Scleropages_formosus
MGP_CAROLIEiJ_G0015551	R3hdm4	89	55.128	ENSSMAG00000021090	r3hdm4	67	54.701	Scophthalmus_maximus
MGP_CAROLIEiJ_G0015551	R3hdm4	89	56.170	ENSSDUG00000008488	r3hdm4	91	55.745	Seriola_dumerili
MGP_CAROLIEiJ_G0015551	R3hdm4	89	56.170	ENSSLDG00000025328	r3hdm4	91	55.745	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0015551	R3hdm4	96	64.961	ENSSPUG00000005434	R3HDM4	99	63.780	Sphenodon_punctatus
MGP_CAROLIEiJ_G0015551	R3hdm4	99	50.566	ENSSPAG00000002562	r3hdm4	99	50.189	Stegastes_partitus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	83.395	ENSSSCG00000013419	R3HDM4	99	82.288	Sus_scrofa
MGP_CAROLIEiJ_G0015551	R3hdm4	78	64.115	ENSTGUG00000000663	R3HDM4	100	62.679	Taeniopygia_guttata
MGP_CAROLIEiJ_G0015551	R3hdm4	92	82.158	ENSTTRG00000001470	R3HDM4	99	81.328	Tursiops_truncatus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	72.694	ENSUAMG00000005751	R3HDM4	99	86.486	Ursus_americanus
MGP_CAROLIEiJ_G0015551	R3hdm4	100	81.919	ENSVVUG00000022685	R3HDM4	99	80.812	Vulpes_vulpes
MGP_CAROLIEiJ_G0015551	R3hdm4	89	46.835	ENSXETG00000033624	R3HDM4	91	46.581	Xenopus_tropicalis
MGP_CAROLIEiJ_G0015551	R3hdm4	99	52.652	ENSXCOG00000005127	r3hdm4	99	51.894	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0015551	R3hdm4	99	52.852	ENSXMAG00000022875	r3hdm4	99	52.091	Xiphophorus_maculatus