EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0015607 (Gene tree)
Gene ID: 110303621
Gene Symbol: Lsm7
Alias: 0910001B06Rik|1110033F18Rik
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 2441 bases
Position: chr10:74856396-74858836
Accession: 110303621
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0024024	LSM	PF01423.22	8.5e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0024024	-	475	XM_021174775	MGP_CAROLIEiJ_P0024024	103 (aa)	XP_021030434	UPI000002540F

Gene Model

Click here to download MGP_CAROLIEiJ_G0015607's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0015607's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0015607	Lsm7	72	35.526	MGP_CAROLIEiJ_G0028125	-	73	35.526

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSG00000130332	LSM7	100	97.087	Homo_sapiens
MGP_CAROLIEiJ_G0015607	Lsm7	91	94.681	ENSAPOG00000015573	lsm7	81	94.681	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	ENSAMEG00000005484	LSM7	100	95.146	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0015607	Lsm7	95	92.857	ENSACIG00000006498	lsm7	78	92.857	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0015607	Lsm7	97	94.000	ENSAOCG00000001077	lsm7	91	94.000	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	ENSAPEG00000024447	lsm7	91	94.000	Amphiprion_percula
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSAPEG00000000694	lsm7	99	94.118	Amphiprion_percula
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSATEG00000008557	lsm7	99	94.118	Anabas_testudineus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSANAG00000037196	-	100	97.087	Aotus_nancymaae
MGP_CAROLIEiJ_G0015607	Lsm7	100	89.320	ENSANAG00000022222	-	100	89.320	Aotus_nancymaae
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSACLG00000021021	lsm7	99	93.137	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSAMXG00000037622	lsm7	99	94.118	Astyanax_mexicanus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSBTAG00000004521	LSM7	100	97.087	Bos_taurus
MGP_CAROLIEiJ_G0015607	Lsm7	97	57.000	WBGene00003081	lsm-7	96	57.000	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0015607	Lsm7	54	98.214	ENSCJAG00000039713	-	68	98.214	Callithrix_jacchus
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSCAFG00000019409	LSM7	98	97.030	Canis_familiaris
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSCAFG00020018168	LSM7	74	97.030	Canis_lupus_dingo
MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	ENSCHIG00000023663	LSM7	100	95.146	Capra_hircus
MGP_CAROLIEiJ_G0015607	Lsm7	69	95.775	ENSCAPG00000014534	LSM7	100	95.775	Cavia_aperea
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSCPOG00000014025	LSM7	100	97.087	Cavia_porcellus
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSCCAG00000035456	LSM7	99	97.030	Cebus_capucinus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSCATG00000023543	LSM7	100	97.087	Cercocebus_atys
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSCLAG00000011635	LSM7	100	97.087	Chinchilla_lanigera
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSCSAG00000011599	LSM7	100	97.087	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0015607	Lsm7	69	92.958	ENSCPBG00000021317	LSM7	76	92.958	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0015607	Lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSCANG00000035525	LSM7	100	97.087	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0015607	Lsm7	87	87.778	ENSCGRG00001016005	-	92	87.778	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0015607	Lsm7	100	98.058	ENSCGRG00001000807	-	100	98.058	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0015607	Lsm7	98	98.020	ENSCGRG00000014355	-	97	98.020	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0015607	Lsm7	87	87.778	ENSCGRG00000006821	-	92	87.778	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0015607	Lsm7	97	94.000	ENSCSEG00000014900	lsm7	85	94.000	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0015607	Lsm7	97	95.000	ENSCVAG00000021091	lsm7	93	95.000	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSDARG00000058328	lsm7	99	94.118	Danio_rerio
MGP_CAROLIEiJ_G0015607	Lsm7	99	96.078	ENSDORG00000024460	Lsm7	100	96.078	Dipodomys_ordii
MGP_CAROLIEiJ_G0015607	Lsm7	94	75.510	FBgn0261068	LSm7	89	75.510	Drosophila_melanogaster
MGP_CAROLIEiJ_G0015607	Lsm7	98	94.059	ENSETEG00000012788	LSM7	99	94.059	Echinops_telfairi
MGP_CAROLIEiJ_G0015607	Lsm7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
MGP_CAROLIEiJ_G0015607	Lsm7	99	85.294	ENSEBUG00000016992	lsm7	98	85.294	Eptatretus_burgeri
MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	ENSECAG00000001440	LSM7	66	95.146	Equus_caballus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSFCAG00000003445	LSM7	100	97.087	Felis_catus
MGP_CAROLIEiJ_G0015607	Lsm7	97	96.000	ENSFALG00000011912	LSM7	99	96.000	Ficedula_albicollis
MGP_CAROLIEiJ_G0015607	Lsm7	93	96.875	ENSFDAG00000007661	LSM7	100	96.875	Fukomys_damarensis
MGP_CAROLIEiJ_G0015607	Lsm7	88	94.505	ENSFHEG00000006349	lsm7	89	95.000	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	ENSGMOG00000013320	lsm7	99	92.157	Gadus_morhua
MGP_CAROLIEiJ_G0015607	Lsm7	99	95.098	ENSGAFG00000013902	lsm7	99	95.098	Gambusia_affinis
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSGACG00000010390	lsm7	99	93.137	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSGGOG00000010172	LSM7	100	97.087	Gorilla_gorilla
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSHBUG00000004616	lsm7	99	93.137	Haplochromis_burtoni
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSHGLG00000010587	LSM7	100	97.087	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSHGLG00100000852	LSM7	100	97.087	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0015607	Lsm7	97	93.000	ENSHCOG00000020252	lsm7	99	93.000	Hippocampus_comes
MGP_CAROLIEiJ_G0015607	Lsm7	99	96.078	ENSIPUG00000024724	lsm7	99	96.078	Ictalurus_punctatus
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSSTOG00000028372	LSM7	99	97.030	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0015607	Lsm7	98	99.010	ENSJJAG00000001936	Lsm7	98	99.010	Jaculus_jaculus
MGP_CAROLIEiJ_G0015607	Lsm7	99	95.098	ENSKMAG00000022151	lsm7	99	95.098	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSLBEG00000005203	lsm7	99	93.137	Labrus_bergylta
MGP_CAROLIEiJ_G0015607	Lsm7	99	96.078	ENSLACG00000015700	LSM7	99	96.078	Latimeria_chalumnae
MGP_CAROLIEiJ_G0015607	Lsm7	99	95.098	ENSLOCG00000004356	lsm7	99	95.098	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSLAFG00000029302	LSM7	98	97.030	Loxodonta_africana
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSMFAG00000044572	LSM7	100	97.087	Macaca_fascicularis
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSMMUG00000000452	LSM7	100	97.087	Macaca_mulatta
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSMNEG00000004393	LSM7	100	97.087	Macaca_nemestrina
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSMLEG00000030852	LSM7	100	97.087	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSMAMG00000005410	lsm7	99	93.137	Mastacembelus_armatus
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSMZEG00005028055	lsm7	99	93.137	Maylandia_zebra
MGP_CAROLIEiJ_G0015607	Lsm7	99	97.059	ENSMGAG00000000750	LSM7	88	97.059	Meleagris_gallopavo
MGP_CAROLIEiJ_G0015607	Lsm7	100	98.058	ENSMAUG00000009276	Lsm7	100	98.058	Mesocricetus_auratus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSMICG00000028619	-	100	97.087	Microcebus_murinus
MGP_CAROLIEiJ_G0015607	Lsm7	100	96.117	ENSMICG00000009988	-	100	96.117	Microcebus_murinus
MGP_CAROLIEiJ_G0015607	Lsm7	100	98.058	ENSMOCG00000016925	Lsm7	100	98.058	Microtus_ochrogaster
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSMMOG00000019645	lsm7	97	94.118	Mola_mola
MGP_CAROLIEiJ_G0015607	Lsm7	99	98.039	ENSMODG00000004722	LSM7	99	98.039	Monodelphis_domestica
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSMALG00000014511	lsm7	78	93.137	Monopterus_albus
MGP_CAROLIEiJ_G0015607	Lsm7	100	100.000	ENSMUSG00000035215	Lsm7	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0015607	Lsm7	100	100.000	MGP_PahariEiJ_G0031020	Lsm7	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0015607	Lsm7	100	100.000	MGP_SPRETEiJ_G0016425	Lsm7	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0015607	Lsm7	100	90.291	ENSMLUG00000024002	-	94	90.291	Myotis_lucifugus
MGP_CAROLIEiJ_G0015607	Lsm7	100	94.175	ENSMLUG00000013097	-	100	94.175	Myotis_lucifugus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSNGAG00000021637	Lsm7	100	97.087	Nannospalax_galili
MGP_CAROLIEiJ_G0015607	Lsm7	97	93.000	ENSNBRG00000015770	lsm7	86	93.000	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0015607	Lsm7	90	93.548	ENSNBRG00000001237	-	82	91.176	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSNLEG00000002265	LSM7	100	97.087	Nomascus_leucogenys
MGP_CAROLIEiJ_G0015607	Lsm7	100	76.699	ENSODEG00000008190	-	100	76.699	Octodon_degus
MGP_CAROLIEiJ_G0015607	Lsm7	100	90.291	ENSODEG00000018769	-	100	90.291	Octodon_degus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSODEG00000013590	-	100	97.087	Octodon_degus
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSONIG00000001801	lsm7	88	93.137	Oreochromis_niloticus
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSORLG00000023951	lsm7	99	94.118	Oryzias_latipes
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSORLG00020022226	lsm7	99	94.118	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	ENSORLG00015020044	lsm7	93	94.000	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSOMEG00000012806	lsm7	99	94.118	Oryzias_melastigma
MGP_CAROLIEiJ_G0015607	Lsm7	100	87.379	ENSOGAG00000024373	-	100	87.379	Otolemur_garnettii
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSOGAG00000000144	-	99	97.030	Otolemur_garnettii
MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	ENSOARG00000014013	LSM7	100	95.146	Ovis_aries
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSPPAG00000026500	LSM7	100	97.087	Pan_paniscus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSPPRG00000008624	LSM7	100	97.087	Panthera_pardus
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSPTIG00000016252	LSM7	98	97.030	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSPTRG00000010233	LSM7	100	97.087	Pan_troglodytes
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSPANG00000020668	LSM7	100	97.087	Papio_anubis
MGP_CAROLIEiJ_G0015607	Lsm7	99	96.078	ENSPKIG00000011325	lsm7	99	96.078	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0015607	Lsm7	97	97.000	ENSPSIG00000017149	LSM7	88	97.000	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSPMGG00000006498	lsm7	99	94.118	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0015607	Lsm7	99	98.039	ENSPCIG00000030454	LSM7	99	98.039	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	ENSPFOG00000012467	lsm7	90	92.157	Poecilia_formosa
MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	ENSPLAG00000000252	lsm7	94	93.069	Poecilia_latipinna
MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	ENSPMEG00000000587	lsm7	94	93.069	Poecilia_mexicana
MGP_CAROLIEiJ_G0015607	Lsm7	78	75.309	ENSPREG00000016718	lsm7	65	75.309	Poecilia_reticulata
MGP_CAROLIEiJ_G0015607	Lsm7	72	94.595	ENSPPYG00000009348	-	51	94.595	Pongo_abelii
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSPCOG00000017177	LSM7	100	97.087	Propithecus_coquereli
MGP_CAROLIEiJ_G0015607	Lsm7	99	93.137	ENSPNYG00000006938	lsm7	99	93.137	Pundamilia_nyererei
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSPNAG00000010141	lsm7	99	94.118	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0015607	Lsm7	100	99.029	ENSRNOG00000019552	Lsm7	100	99.029	Rattus_norvegicus
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSRBIG00000035978	LSM7	100	97.087	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSRROG00000034044	LSM7	100	97.087	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0015607	Lsm7	86	47.826	YNL147W	-	80	47.826	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0015607	Lsm7	100	97.087	ENSSBOG00000034899	LSM7	100	97.087	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSSFOG00015006728	lsm7	99	94.118	Scleropages_formosus
MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	ENSSMAG00000004195	lsm7	92	94.000	Scophthalmus_maximus
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSSDUG00000001863	lsm7	99	94.118	Seriola_dumerili
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSSLDG00000016339	lsm7	99	94.118	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSSPAG00000015221	lsm7	99	94.118	Stegastes_partitus
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSSSCG00000013463	LSM7	99	97.030	Sus_scrofa
MGP_CAROLIEiJ_G0015607	Lsm7	97	96.000	ENSTGUG00000000067	LSM7	99	96.000	Taeniopygia_guttata
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSTRUG00000022913	lsm7	99	94.118	Takifugu_rubripes
MGP_CAROLIEiJ_G0015607	Lsm7	99	94.118	ENSTNIG00000015525	lsm7	99	94.118	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0015607	Lsm7	67	86.957	ENSTBEG00000016602	LSM7	99	86.957	Tupaia_belangeri
MGP_CAROLIEiJ_G0015607	Lsm7	100	95.146	ENSUAMG00000000912	LSM7	86	95.146	Ursus_americanus
MGP_CAROLIEiJ_G0015607	Lsm7	98	97.030	ENSUMAG00000006556	LSM7	79	97.030	Ursus_maritimus
MGP_CAROLIEiJ_G0015607	Lsm7	69	95.775	ENSVVUG00000002640	LSM7	65	95.775	Vulpes_vulpes
MGP_CAROLIEiJ_G0015607	Lsm7	97	96.000	ENSXETG00000022166	lsm7	99	96.000	Xenopus_tropicalis
MGP_CAROLIEiJ_G0015607	Lsm7	98	94.059	ENSXCOG00000002572	lsm7	99	94.059	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0015607	Lsm7	99	95.098	ENSXMAG00000018630	lsm7	99	95.098	Xiphophorus_maculatus