EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0016007 (Gene tree)
Gene ID: 110305216
Gene Symbol: Patz1
Alias: 8430401L15Rik|MAZR|POZ-AT hook-zinc finger protein|Zfp278
Full Name: POZ/BTB and AT hook containing zinc finger 1
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 20724 bases
Position: chr11:117966-138689
Accession: 110305216
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0025298	zf-C2H2	PF00096.26	3.8e-26	1	5
MGP_CAROLIEiJ_P0025298	zf-C2H2	PF00096.26	3.8e-26	2	5
MGP_CAROLIEiJ_P0025298	zf-C2H2	PF00096.26	3.8e-26	3	5
MGP_CAROLIEiJ_P0025298	zf-C2H2	PF00096.26	3.8e-26	4	5
MGP_CAROLIEiJ_P0025298	zf-C2H2	PF00096.26	3.8e-26	5	5
MGP_CAROLIEiJ_P0025299	zf-C2H2	PF00096.26	4.9e-20	1	4
MGP_CAROLIEiJ_P0025299	zf-C2H2	PF00096.26	4.9e-20	2	4
MGP_CAROLIEiJ_P0025299	zf-C2H2	PF00096.26	4.9e-20	3	4
MGP_CAROLIEiJ_P0025299	zf-C2H2	PF00096.26	4.9e-20	4	4
MGP_CAROLIEiJ_P0025300	zf-C2H2	PF00096.26	1.8e-16	1	3
MGP_CAROLIEiJ_P0025300	zf-C2H2	PF00096.26	1.8e-16	2	3
MGP_CAROLIEiJ_P0025300	zf-C2H2	PF00096.26	1.8e-16	3	3
MGP_CAROLIEiJ_P0025297	zf-C2H2	PF00096.26	2.1e-15	1	3
MGP_CAROLIEiJ_P0025297	zf-C2H2	PF00096.26	2.1e-15	2	3
MGP_CAROLIEiJ_P0025297	zf-C2H2	PF00096.26	2.1e-15	3	3
MGP_CAROLIEiJ_P0025298	zf-met	PF12874.7	3.6e-11	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0025300	-	3174	-	MGP_CAROLIEiJ_P0025300	537 (aa)	-	UPI000049C712
MGP_CAROLIEiJ_T0025293	-	798	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0025302	-	456	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0025303	-	644	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0025296	-	1905	-	MGP_CAROLIEiJ_P0025296	102 (aa)	-	UPI00001B63B0
MGP_CAROLIEiJ_T0025297	-	2914	XM_021177057	MGP_CAROLIEiJ_P0025297	537 (aa)	XP_021032716	UPI000A315887
MGP_CAROLIEiJ_T0025294	-	1854	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0025295	-	845	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0025298	-	3700	XM_021177058	MGP_CAROLIEiJ_P0025298	687 (aa)	XP_021032717	UPI000A31725A
MGP_CAROLIEiJ_T0025299	-	3119	-	MGP_CAROLIEiJ_P0025299	641 (aa)	XP_021032715	UPI000A31637E
MGP_CAROLIEiJ_T0025301	-	1249	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0025304	-	477	-	MGP_CAROLIEiJ_P0025304	70 (aa)	-	UPI000049C713

Gene Model

Click here to download MGP_CAROLIEiJ_G0016007's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0016007's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0016007	Patz1	91	35.099	MGP_CAROLIEiJ_G0024901	Mynn	91	30.272
MGP_CAROLIEiJ_G0016007	Patz1	53	30.745	MGP_CAROLIEiJ_G0029490	Zfp420	94	30.745
MGP_CAROLIEiJ_G0016007	Patz1	65	31.325	MGP_CAROLIEiJ_G0018661	Zfp759	85	35.948
MGP_CAROLIEiJ_G0016007	Patz1	65	46.429	MGP_CAROLIEiJ_G0016622	Bcl6b	65	36.301
MGP_CAROLIEiJ_G0016007	Patz1	55	34.498	MGP_CAROLIEiJ_G0029329	Zfp94	66	34.498
MGP_CAROLIEiJ_G0016007	Patz1	52	31.111	MGP_CAROLIEiJ_G0029327	Zfp93	60	31.095
MGP_CAROLIEiJ_G0016007	Patz1	51	30.075	MGP_CAROLIEiJ_G0029356	Zfp574	62	32.609
MGP_CAROLIEiJ_G0016007	Patz1	88	36.232	MGP_CAROLIEiJ_G0021848	Zbtb14	90	38.889
MGP_CAROLIEiJ_G0016007	Patz1	60	33.880	MGP_CAROLIEiJ_G0029427	-	88	33.621
MGP_CAROLIEiJ_G0016007	Patz1	54	35.507	MGP_CAROLIEiJ_G0028463	Prdm5	81	31.553

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0016007	Patz1	100	98.883	ENSG00000100105	PATZ1	100	98.883	Homo_sapiens
MGP_CAROLIEiJ_G0016007	Patz1	99	60.612	ENSAPOG00000018447	patz1	100	59.520	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.544	ENSAMEG00000007074	PATZ1	100	98.544	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0016007	Patz1	100	60.425	ENSACIG00000016779	patz1	100	60.155	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0016007	Patz1	100	57.983	ENSAPEG00000013354	patz1	100	57.983	Amphiprion_percula
MGP_CAROLIEiJ_G0016007	Patz1	99	63.137	ENSATEG00000011260	patz1	100	62.745	Anabas_testudineus
MGP_CAROLIEiJ_G0016007	Patz1	85	90.753	ENSAPLG00000003934	PATZ1	99	90.582	Anas_platyrhynchos
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSANAG00000029603	PATZ1	100	98.836	Aotus_nancymaae
MGP_CAROLIEiJ_G0016007	Patz1	97	62.424	ENSAMXG00000002273	patz1	98	60.862	Astyanax_mexicanus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.596	ENSBTAG00000005478	PATZ1	100	98.596	Bos_taurus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSCJAG00000010978	PATZ1	100	98.836	Callithrix_jacchus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.752	ENSCAFG00000013087	PATZ1	100	98.690	Canis_familiaris
MGP_CAROLIEiJ_G0016007	Patz1	100	98.128	ENSCHIG00000020203	PATZ1	100	98.128	Capra_hircus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.752	ENSTSYG00000033183	PATZ1	100	98.752	Carlito_syrichta
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSCCAG00000028772	PATZ1	100	98.836	Cebus_capucinus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSCATG00000006101	PATZ1	100	98.836	Cercocebus_atys
MGP_CAROLIEiJ_G0016007	Patz1	100	88.696	ENSCPBG00000011277	PATZ1	100	88.406	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSCANG00000024972	PATZ1	100	98.836	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0016007	Patz1	100	97.234	ENSCGRG00001004071	Patz1	100	97.234	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0016007	Patz1	93	97.978	ENSCGRG00000004814	Patz1	100	97.978	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0016007	Patz1	100	55.105	ENSCSEG00000001385	patz1	100	55.182	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0016007	Patz1	100	58.997	ENSCVAG00000007684	patz1	100	59.380	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0016007	Patz1	97	60.679	ENSDARG00000076584	patz1	98	58.663	Danio_rerio
MGP_CAROLIEiJ_G0016007	Patz1	97	95.420	ENSDNOG00000003183	PATZ1	100	97.900	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0016007	Patz1	100	99.064	ENSDORG00000023834	Patz1	100	99.064	Dipodomys_ordii
MGP_CAROLIEiJ_G0016007	Patz1	100	98.596	ENSECAG00000025030	PATZ1	100	98.596	Equus_caballus
MGP_CAROLIEiJ_G0016007	Patz1	99	61.509	ENSELUG00000002333	patz1	100	57.835	Esox_lucius
MGP_CAROLIEiJ_G0016007	Patz1	100	98.752	ENSFCAG00000030253	PATZ1	100	98.752	Felis_catus
MGP_CAROLIEiJ_G0016007	Patz1	86	91.186	ENSFALG00000007450	PATZ1	99	91.141	Ficedula_albicollis
MGP_CAROLIEiJ_G0016007	Patz1	96	96.881	ENSFDAG00000005614	PATZ1	100	96.881	Fukomys_damarensis
MGP_CAROLIEiJ_G0016007	Patz1	100	58.065	ENSFHEG00000014755	patz1	100	57.771	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0016007	Patz1	98	54.979	ENSGMOG00000001062	patz1	98	54.709	Gadus_morhua
MGP_CAROLIEiJ_G0016007	Patz1	100	88.058	ENSGALG00000006934	PATZ1	100	88.058	Gallus_gallus
MGP_CAROLIEiJ_G0016007	Patz1	100	59.029	ENSGAFG00000010053	patz1	100	58.003	Gambusia_affinis
MGP_CAROLIEiJ_G0016007	Patz1	85	91.424	ENSGAGG00000003214	PATZ1	100	91.252	Gopherus_agassizii
MGP_CAROLIEiJ_G0016007	Patz1	100	98.981	ENSGGOG00000017171	PATZ1	100	98.981	Gorilla_gorilla
MGP_CAROLIEiJ_G0016007	Patz1	97	62.648	ENSHCOG00000017644	patz1	98	61.191	Hippocampus_comes
MGP_CAROLIEiJ_G0016007	Patz1	97	60.489	ENSIPUG00000017653	patz1	97	54.031	Ictalurus_punctatus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.544	ENSSTOG00000020707	PATZ1	100	98.544	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0016007	Patz1	100	97.242	ENSJJAG00000015259	Patz1	100	97.242	Jaculus_jaculus
MGP_CAROLIEiJ_G0016007	Patz1	100	57.775	ENSKMAG00000008157	patz1	100	57.872	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0016007	Patz1	100	97.962	ENSLAFG00000002317	PATZ1	100	97.962	Loxodonta_africana
MGP_CAROLIEiJ_G0016007	Patz1	100	98.690	ENSMFAG00000040968	PATZ1	100	98.690	Macaca_fascicularis
MGP_CAROLIEiJ_G0016007	Patz1	100	98.690	ENSMNEG00000037588	PATZ1	100	98.690	Macaca_nemestrina
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSMLEG00000030938	PATZ1	100	98.836	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0016007	Patz1	100	57.625	ENSMAMG00000023652	patz1	100	57.918	Mastacembelus_armatus
MGP_CAROLIEiJ_G0016007	Patz1	85	87.179	ENSMGAG00000008439	PATZ1	100	87.009	Meleagris_gallopavo
MGP_CAROLIEiJ_G0016007	Patz1	100	98.981	ENSMAUG00000004129	Patz1	100	98.981	Mesocricetus_auratus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.596	ENSMICG00000005430	PATZ1	100	98.596	Microcebus_murinus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSMOCG00000014488	Patz1	100	98.836	Microtus_ochrogaster
MGP_CAROLIEiJ_G0016007	Patz1	99	55.664	ENSMMOG00000021679	patz1	100	49.168	Mola_mola
MGP_CAROLIEiJ_G0016007	Patz1	100	57.001	ENSMALG00000021172	patz1	100	57.001	Monopterus_albus
MGP_CAROLIEiJ_G0016007	Patz1	100	100.000	ENSMUSG00000020453	Patz1	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0016007	Patz1	100	100.000	MGP_PahariEiJ_G0016884	Patz1	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0016007	Patz1	100	100.000	MGP_SPRETEiJ_G0016846	Patz1	100	100.000	Mus_spretus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.440	ENSMLUG00000009942	PATZ1	100	98.440	Myotis_lucifugus
MGP_CAROLIEiJ_G0016007	Patz1	100	99.272	ENSNGAG00000010268	Patz1	100	99.272	Nannospalax_galili
MGP_CAROLIEiJ_G0016007	Patz1	100	60.232	ENSNBRG00000016032	patz1	100	59.961	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0016007	Patz1	68	93.548	ENSMEUG00000016293	PATZ1	100	93.548	Notamacropus_eugenii
MGP_CAROLIEiJ_G0016007	Patz1	100	97.817	ENSODEG00000003589	PATZ1	100	97.817	Octodon_degus
MGP_CAROLIEiJ_G0016007	Patz1	100	58.918	ENSONIG00000004248	patz1	100	58.858	Oreochromis_niloticus
MGP_CAROLIEiJ_G0016007	Patz1	100	92.598	ENSOANG00000014654	PATZ1	100	93.324	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0016007	Patz1	100	59.389	ENSORLG00020010937	patz1	100	59.389	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0016007	Patz1	100	58.150	ENSORLG00015007396	patz1	100	58.150	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0016007	Patz1	100	57.879	ENSOMEG00000006636	patz1	100	57.879	Oryzias_melastigma
MGP_CAROLIEiJ_G0016007	Patz1	100	98.399	ENSOGAG00000027905	PATZ1	100	98.399	Otolemur_garnettii
MGP_CAROLIEiJ_G0016007	Patz1	100	98.981	ENSPPAG00000033227	PATZ1	100	98.981	Pan_paniscus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.752	ENSPPRG00000001573	PATZ1	100	98.752	Panthera_pardus
MGP_CAROLIEiJ_G0016007	Patz1	86	98.482	ENSPTIG00000007937	PATZ1	91	98.482	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0016007	Patz1	100	98.981	ENSPTRG00000014268	PATZ1	100	98.981	Pan_troglodytes
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSPANG00000006821	PATZ1	100	98.836	Papio_anubis
MGP_CAROLIEiJ_G0016007	Patz1	100	62.127	ENSPKIG00000019584	patz1	100	61.517	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0016007	Patz1	71	79.275	ENSPSIG00000016553	-	91	82.809	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0016007	Patz1	58	95.202	ENSPSIG00000011562	-	100	95.714	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0016007	Patz1	100	57.303	ENSPMGG00000010196	patz1	100	57.584	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.908	ENSPEMG00000005321	Patz1	100	98.908	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0016007	Patz1	100	57.771	ENSPLAG00000010425	patz1	100	57.771	Poecilia_latipinna
MGP_CAROLIEiJ_G0016007	Patz1	100	57.856	ENSPMEG00000000255	patz1	100	57.856	Poecilia_mexicana
MGP_CAROLIEiJ_G0016007	Patz1	100	57.320	ENSPREG00000002440	patz1	100	57.320	Poecilia_reticulata
MGP_CAROLIEiJ_G0016007	Patz1	100	98.690	ENSPPYG00000011732	PATZ1	100	98.690	Pongo_abelii
MGP_CAROLIEiJ_G0016007	Patz1	100	98.596	ENSPCOG00000019729	PATZ1	100	98.596	Propithecus_coquereli
MGP_CAROLIEiJ_G0016007	Patz1	100	98.544	ENSPVAG00000001749	PATZ1	100	98.544	Pteropus_vampyrus
MGP_CAROLIEiJ_G0016007	Patz1	100	59.384	ENSPNYG00000013542	patz1	100	59.187	Pundamilia_nyererei
MGP_CAROLIEiJ_G0016007	Patz1	84	60.454	ENSPNAG00000017222	patz1	99	59.486	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSRBIG00000044231	PATZ1	100	98.836	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSRROG00000037155	PATZ1	100	98.836	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0016007	Patz1	100	98.836	ENSSBOG00000003894	PATZ1	100	98.836	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0016007	Patz1	79	88.462	ENSSFOG00015013244	patz1	78	88.462	Scleropages_formosus
MGP_CAROLIEiJ_G0016007	Patz1	100	86.486	ENSSPUG00000015298	PATZ1	100	86.202	Sphenodon_punctatus
MGP_CAROLIEiJ_G0016007	Patz1	85	97.938	ENSSSCG00000010027	PATZ1	100	97.948	Sus_scrofa
MGP_CAROLIEiJ_G0016007	Patz1	100	58.402	ENSTRUG00000015366	patz1	100	58.402	Takifugu_rubripes
MGP_CAROLIEiJ_G0016007	Patz1	100	98.544	ENSTTRG00000010279	PATZ1	100	98.544	Tursiops_truncatus
MGP_CAROLIEiJ_G0016007	Patz1	100	98.752	ENSUAMG00000015014	PATZ1	100	98.752	Ursus_americanus
MGP_CAROLIEiJ_G0016007	Patz1	100	72.754	ENSXETG00000004190	patz1	100	72.029	Xenopus_tropicalis
MGP_CAROLIEiJ_G0016007	Patz1	100	58.150	ENSXMAG00000015531	patz1	100	58.150	Xiphophorus_maculatus