EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0016029 (Gene tree)
Gene ID
110304786
Gene Symbol
Sf3a1
Alias
1200014H24Rik|5930416L09Rik
Full Name
splicing factor 3a subunit 1
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Plus strand
Length
24176 bases
Position
chr11:981859-1006034
Accession
110304786
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0025412PRP21_like_PPF12230.81.3e-5111
MGP_CAROLIEiJ_P0025412SurpPF01805.201.2e-4512
MGP_CAROLIEiJ_P0025412SurpPF01805.201.2e-4522
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0025412-4941-MGP_CAROLIEiJ_P0025412791 (aa)XP_021032038UPI0000028DD6
MGP_CAROLIEiJ_T0025413-424--- (aa)--
MGP_CAROLIEiJ_T0025414-1667--- (aa)--
MGP_CAROLIEiJ_T0025415-845--- (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0016029's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0016029's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSG00000099995SF3A110098.108Homo_sapiens
MGP_CAROLIEiJ_G0016029Sf3a19983.439ENSAPOG00000020465sf3a19984.833Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0016029Sf3a110097.484ENSAMEG00000007737SF3A110097.484Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0016029Sf3a19984.586ENSACIG00000020672sf3a19885.677Amphilophus_citrinellus
MGP_CAROLIEiJ_G0016029Sf3a19983.038ENSAOCG00000003060sf3a19984.576Amphiprion_ocellaris
MGP_CAROLIEiJ_G0016029Sf3a19983.165ENSAPEG00000010735sf3a19984.704Amphiprion_percula
MGP_CAROLIEiJ_G0016029Sf3a19785.436ENSATEG00000021201sf3a19785.566Anabas_testudineus
MGP_CAROLIEiJ_G0016029Sf3a19593.527ENSAPLG00000009057SF3A19992.367Anas_platyrhynchos
MGP_CAROLIEiJ_G0016029Sf3a110085.714ENSACAG00000009415SF3A110086.330Anolis_carolinensis
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSANAG00000032045SF3A110098.108Aotus_nancymaae
MGP_CAROLIEiJ_G0016029Sf3a19984.411ENSACLG00000012622sf3a19984.942Astatotilapia_calliptera
MGP_CAROLIEiJ_G0016029Sf3a19983.439ENSAMXG00000005382sf3a19884.605Astyanax_mexicanus
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSBTAG00000003390SF3A110098.235Bos_taurus
MGP_CAROLIEiJ_G0016029Sf3a18443.423WBGene00004188prp-219044.847Caenorhabditis_elegans
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSCJAG00000010370SF3A110098.108Callithrix_jacchus
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSCAFG00000012559SF3A110097.982Canis_familiaris
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSCAFG00020000838SF3A110097.982Canis_lupus_dingo
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSCHIG00000018642SF3A110098.108Capra_hircus
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSTSYG00000004739SF3A110098.235Carlito_syrichta
MGP_CAROLIEiJ_G0016029Sf3a19480.774ENSCAPG00000015414SF3A19880.774Cavia_aperea
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSCPOG00000014589SF3A110098.108Cavia_porcellus
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSCCAG00000032006SF3A110098.108Cebus_capucinus
MGP_CAROLIEiJ_G0016029Sf3a110098.487ENSCATG00000029241SF3A110098.487Cercocebus_atys
MGP_CAROLIEiJ_G0016029Sf3a110097.856ENSCLAG00000006508SF3A110097.856Chinchilla_lanigera
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSCSAG00000009470SF3A110098.361Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0016029Sf3a16198.165ENSCHOG00000005201SF3A16998.165Choloepus_hoffmanni
MGP_CAROLIEiJ_G0016029Sf3a110090.554ENSCPBG00000007595SF3A110090.680Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0016029Sf3a19452.778ENSCING00000008526-6657.663Ciona_intestinalis
MGP_CAROLIEiJ_G0016029Sf3a19651.358ENSCSAVG00000005608-9065.179Ciona_savignyi
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSCANG00000033564SF3A110098.361Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0016029Sf3a110098.739ENSCGRG00001008933Sf3a110098.739Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0016029Sf3a110098.739ENSCGRG00000006127Sf3a110098.739Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0016029Sf3a19982.084ENSCSEG00000010792sf3a19883.117Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0016029Sf3a19982.576ENSCVAG00000004560sf3a19883.506Cyprinodon_variegatus
MGP_CAROLIEiJ_G0016029Sf3a19683.833ENSDARG00000041887sf3a19784.224Danio_rerio
MGP_CAROLIEiJ_G0016029Sf3a110097.736ENSDNOG00000010629SF3A110097.736Dasypus_novemcinctus
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSDORG00000005613Sf3a110098.108Dipodomys_ordii
MGP_CAROLIEiJ_G0016029Sf3a17961.495FBgn0266917Sf3a18459.567Drosophila_melanogaster
MGP_CAROLIEiJ_G0016029Sf3a18496.407ENSETEG00000017194SF3A19596.257Echinops_telfairi
MGP_CAROLIEiJ_G0016029Sf3a19766.504ENSEBUG00000001285sf3a17767.341Eptatretus_burgeri
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSEASG00005010254SF3A110098.361Equus_asinus_asinus
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSECAG00000023962SF3A110098.361Equus_caballus
MGP_CAROLIEiJ_G0016029Sf3a17393.443ENSEEUG00000003159SF3A18293.443Erinaceus_europaeus
MGP_CAROLIEiJ_G0016029Sf3a19982.138ENSELUG00000022578sf3a19783.748Esox_lucius
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSFCAG00000011932SF3A110097.982Felis_catus
MGP_CAROLIEiJ_G0016029Sf3a19592.460ENSFALG00000006944SF3A19891.774Ficedula_albicollis
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSFDAG00000009560SF3A110098.108Fukomys_damarensis
MGP_CAROLIEiJ_G0016029Sf3a19982.955ENSFHEG00000010866sf3a19884.456Fundulus_heteroclitus
MGP_CAROLIEiJ_G0016029Sf3a19980.531ENSGMOG00000016024sf3a19781.070Gadus_morhua
MGP_CAROLIEiJ_G0016029Sf3a19593.519ENSGALG00000007937SF3A19892.416Gallus_gallus
MGP_CAROLIEiJ_G0016029Sf3a19983.207ENSGAFG00000009111sf3a19784.605Gambusia_affinis
MGP_CAROLIEiJ_G0016029Sf3a19982.554ENSGACG00000011893sf3a19783.355Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0016029Sf3a19690.539ENSGAGG00000000762SF3A19990.670Gopherus_agassizii
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSGGOG00000012631SF3A110098.108Gorilla_gorilla
MGP_CAROLIEiJ_G0016029Sf3a19984.411ENSHBUG00000015795sf3a19984.942Haplochromis_burtoni
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSHGLG00000007907SF3A110098.235Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSHGLG00100013799SF3A110098.235Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0016029Sf3a19979.924ENSHCOG00000015423sf3a19980.774Hippocampus_comes
MGP_CAROLIEiJ_G0016029Sf3a19682.031ENSIPUG00000002470sf3a19882.422Ictalurus_punctatus
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSSTOG00000013892SF3A110098.235Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0016029Sf3a110098.237ENSJJAG00000022566Sf3a110098.237Jaculus_jaculus
MGP_CAROLIEiJ_G0016029Sf3a19983.081ENSKMAG00000002400sf3a19884.845Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0016029Sf3a19982.576ENSLBEG00000022974sf3a19883.182Labrus_bergylta
MGP_CAROLIEiJ_G0016029Sf3a110086.951ENSLACG00000003565SF3A19788.411Latimeria_chalumnae
MGP_CAROLIEiJ_G0016029Sf3a110084.336ENSLOCG00000008251sf3a19785.195Lepisosteus_oculatus
MGP_CAROLIEiJ_G0016029Sf3a110097.856ENSLAFG00000000448SF3A110097.856Loxodonta_africana
MGP_CAROLIEiJ_G0016029Sf3a19762.500ENSLAFG00000026032-9761.727Loxodonta_africana
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSMFAG00000031979SF3A110098.235Macaca_fascicularis
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSMMUG00000005547SF3A110098.235Macaca_mulatta
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSMNEG00000037229SF3A110098.108Macaca_nemestrina
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSMLEG00000041908SF3A110098.361Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0016029Sf3a19785.363ENSMAMG00000006460sf3a19685.622Mastacembelus_armatus
MGP_CAROLIEiJ_G0016029Sf3a19984.411ENSMZEG00005009633sf3a19984.942Maylandia_zebra
MGP_CAROLIEiJ_G0016029Sf3a19593.519ENSMGAG00000001330SF3A110092.487Meleagris_gallopavo
MGP_CAROLIEiJ_G0016029Sf3a19295.355ENSMAUG00000020317Sf3a19495.355Mesocricetus_auratus
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSMICG00000010038SF3A110097.982Microcebus_murinus
MGP_CAROLIEiJ_G0016029Sf3a110098.739ENSMOCG00000008438Sf3a110098.739Microtus_ochrogaster
MGP_CAROLIEiJ_G0016029Sf3a19981.911ENSMMOG00000015588sf3a19881.759Mola_mola
MGP_CAROLIEiJ_G0016029Sf3a110096.847ENSMODG00000009270SF3A110096.847Monodelphis_domestica
MGP_CAROLIEiJ_G0016029Sf3a19983.944ENSMALG00000000148sf3a19985.695Monopterus_albus
MGP_CAROLIEiJ_G0016029Sf3a1100100.000ENSMUSG00000002129Sf3a1100100.000Mus_musculus
MGP_CAROLIEiJ_G0016029Sf3a110099.747MGP_PahariEiJ_G0016862Sf3a110099.747Mus_pahari
MGP_CAROLIEiJ_G0016029Sf3a1100100.000MGP_SPRETEiJ_G0016870Sf3a1100100.000Mus_spretus
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSMPUG00000013144SF3A110097.982Mustela_putorius_furo
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSMLUG00000002139SF3A110098.108Myotis_lucifugus
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSNGAG00000016977Sf3a110098.235Nannospalax_galili
MGP_CAROLIEiJ_G0016029Sf3a19984.197ENSNBRG00000016642sf3a19786.013Neolamprologus_brichardi
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSNLEG00000003686SF3A110098.361Nomascus_leucogenys
MGP_CAROLIEiJ_G0016029Sf3a19487.097ENSMEUG00000008741SF3A110086.974Notamacropus_eugenii
MGP_CAROLIEiJ_G0016029Sf3a110097.604ENSOPRG00000016636SF3A110097.604Ochotona_princeps
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSODEG00000002571SF3A110098.235Octodon_degus
MGP_CAROLIEiJ_G0016029Sf3a19984.051ENSONIG00000010848sf3a19984.319Oreochromis_niloticus
MGP_CAROLIEiJ_G0016029Sf3a110097.856ENSOCUG00000007633SF3A110097.856Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0016029Sf3a19582.048ENSORLG00000013050sf3a19883.356Oryzias_latipes
MGP_CAROLIEiJ_G0016029Sf3a19880.513ENSORLG00020003236sf3a19781.534Oryzias_latipes_hni
MGP_CAROLIEiJ_G0016029Sf3a19982.071ENSORLG00015017411sf3a19784.737Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0016029Sf3a19982.675ENSOMEG00000013362sf3a19983.097Oryzias_melastigma
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSOGAG00000012931SF3A110097.982Otolemur_garnettii
MGP_CAROLIEiJ_G0016029Sf3a110096.343ENSOARG00000006849SF3A110096.343Ovis_aries
MGP_CAROLIEiJ_G0016029Sf3a110097.100ENSPPAG00000041790SF3A110097.100Pan_paniscus
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSPPRG00000004391SF3A110097.982Panthera_pardus
MGP_CAROLIEiJ_G0016029Sf3a19798.187ENSPTIG00000000844SF3A110098.187Panthera_tigris_altaica
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSPTRG00000014240SF3A110098.108Pan_troglodytes
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSPANG00000020772SF3A110098.361Papio_anubis
MGP_CAROLIEiJ_G0016029Sf3a18392.308ENSPSIG00000012803SF3A19693.762Pelodiscus_sinensis
MGP_CAROLIEiJ_G0016029Sf3a19684.585ENSPMGG00000023096sf3a19984.321Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0016029Sf3a110098.865ENSPEMG00000009494Sf3a110098.865Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0016029Sf3a16976.407ENSPMAG00000007139-9079.213Petromyzon_marinus
MGP_CAROLIEiJ_G0016029Sf3a110096.595ENSPCIG00000022692SF3A110096.595Phascolarctos_cinereus
MGP_CAROLIEiJ_G0016029Sf3a19278.912ENSPFOG00000016768sf3a19378.231Poecilia_formosa
MGP_CAROLIEiJ_G0016029Sf3a19982.323ENSPLAG00000017268sf3a19784.868Poecilia_latipinna
MGP_CAROLIEiJ_G0016029Sf3a19685.392ENSPMEG00000019811sf3a19884.488Poecilia_mexicana
MGP_CAROLIEiJ_G0016029Sf3a19982.449ENSPREG00000010347sf3a19785.395Poecilia_reticulata
MGP_CAROLIEiJ_G0016029Sf3a110098.361ENSPPYG00000011707SF3A110098.361Pongo_abelii
MGP_CAROLIEiJ_G0016029Sf3a15797.642ENSPCAG00000003266SF3A15797.642Procavia_capensis
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSPCOG00000026630SF3A110098.108Propithecus_coquereli
MGP_CAROLIEiJ_G0016029Sf3a110093.821ENSPVAG00000017719SF3A19497.450Pteropus_vampyrus
MGP_CAROLIEiJ_G0016029Sf3a19984.411ENSPNYG00000018706sf3a19984.942Pundamilia_nyererei
MGP_CAROLIEiJ_G0016029Sf3a19882.824ENSPNAG00000003721sf3a19983.312Pygocentrus_nattereri
MGP_CAROLIEiJ_G0016029Sf3a110099.241ENSRNOG00000005218Sf3a110099.241Rattus_norvegicus
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSRBIG00000032167SF3A110098.235Rhinopithecus_bieti
MGP_CAROLIEiJ_G0016029Sf3a110098.235ENSRROG00000044908SF3A110098.235Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0016029Sf3a19794.057ENSSBOG00000021960SF3A110098.375Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0016029Sf3a19992.803ENSSHAG00000003666SF3A19893.935Sarcophilus_harrisii
MGP_CAROLIEiJ_G0016029Sf3a19983.418ENSSFOG00015004579sf3a19984.615Scleropages_formosus
MGP_CAROLIEiJ_G0016029Sf3a19981.692ENSSMAG00000004275sf3a19882.987Scophthalmus_maximus
MGP_CAROLIEiJ_G0016029Sf3a19984.051ENSSDUG00000022219sf3a19984.190Seriola_dumerili
MGP_CAROLIEiJ_G0016029Sf3a19984.051ENSSLDG00000012642sf3a19984.190Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0016029Sf3a19794.689ENSSARG00000005960SF3A110094.689Sorex_araneus
MGP_CAROLIEiJ_G0016029Sf3a19691.958ENSSPUG00000018863SF3A110091.294Sphenodon_punctatus
MGP_CAROLIEiJ_G0016029Sf3a19984.459ENSSPAG00000011856sf3a19984.576Stegastes_partitus
MGP_CAROLIEiJ_G0016029Sf3a110098.108ENSSSCG00000010002SF3A110098.108Sus_scrofa
MGP_CAROLIEiJ_G0016029Sf3a19593.404ENSTGUG00000010547SF3A19992.866Taeniopygia_guttata
MGP_CAROLIEiJ_G0016029Sf3a19981.313ENSTRUG00000006118sf3a19782.368Takifugu_rubripes
MGP_CAROLIEiJ_G0016029Sf3a16481.041ENSTNIG00000005713sf3a18184.821Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0016029Sf3a19890.734ENSTBEG00000012771SF3A110090.794Tupaia_belangeri
MGP_CAROLIEiJ_G0016029Sf3a110097.859ENSTTRG00000001535SF3A110097.859Tursiops_truncatus
MGP_CAROLIEiJ_G0016029Sf3a19997.078ENSUAMG00000006750SF3A19997.078Ursus_americanus
MGP_CAROLIEiJ_G0016029Sf3a19996.947ENSUMAG00000016665SF3A19898.189Ursus_maritimus
MGP_CAROLIEiJ_G0016029Sf3a110097.982ENSVVUG00000003075SF3A110097.982Vulpes_vulpes
MGP_CAROLIEiJ_G0016029Sf3a110085.445ENSXETG00000016144sf3a110085.194Xenopus_tropicalis
MGP_CAROLIEiJ_G0016029Sf3a19982.955ENSXCOG00000015653sf3a19784.737Xiphophorus_couchianus
MGP_CAROLIEiJ_G0016029Sf3a19983.081ENSXMAG00000002753sf3a19784.868Xiphophorus_maculatus

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