EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0016564 (Gene tree)
Gene ID: 110305728
Gene Symbol: Chd3
Alias: 2600010P09Rik|Chd7|Mi-2 alpha|Prp7|Prp9-1
Full Name: chromodomain helicase DNA binding protein 3
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 26809 bases
Position: chr11:64071917-64098725
Accession: 110305728
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0027525	ResIII	PF04851.15	3.3e-08	1	1
MGP_CAROLIEiJ_P0027524	ResIII	PF04851.15	3.6e-08	1	1
MGP_CAROLIEiJ_P0027523	ResIII	PF04851.15	3.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0027530	-	430	-	MGP_CAROLIEiJ_P0027530	143 (aa)	-	-
MGP_CAROLIEiJ_T0027522	-	1876	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0027523	-	7219	XM_021177795	MGP_CAROLIEiJ_P0027523	2048 (aa)	XP_021033454	-
MGP_CAROLIEiJ_T0027521	-	2147	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0027526	-	747	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0027527	-	436	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0027524	-	6045	-	MGP_CAROLIEiJ_P0027524	2014 (aa)	-	-
MGP_CAROLIEiJ_T0027525	-	5648	-	MGP_CAROLIEiJ_P0027525	1882 (aa)	-	-
MGP_CAROLIEiJ_T0027528	-	591	-	MGP_CAROLIEiJ_P0027528	196 (aa)	-	-
MGP_CAROLIEiJ_T0027529	-	453	-	MGP_CAROLIEiJ_P0027529	151 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0016564's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0016564's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0016564	Chd3	98	68.437	MGP_CAROLIEiJ_G0026857	Chd5	96	69.651

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0016564	Chd3	100	97.561	ENSG00000170004	CHD3	99	96.975	Homo_sapiens
MGP_CAROLIEiJ_G0016564	Chd3	88	76.347	ENSAPOG00000005614	chd3	94	79.771	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0016564	Chd3	66	95.974	ENSAMEG00000003025	-	100	95.974	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0016564	Chd3	88	76.007	ENSACIG00000019671	chd3	99	80.488	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0016564	Chd3	95	80.546	ENSAOCG00000023784	chd3	99	77.651	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0016564	Chd3	95	79.863	ENSAPEG00000006341	chd3	96	76.337	Amphiprion_percula
MGP_CAROLIEiJ_G0016564	Chd3	95	80.969	ENSATEG00000000848	chd3	99	74.096	Anabas_testudineus
MGP_CAROLIEiJ_G0016564	Chd3	99	84.829	ENSACAG00000004276	CHD3	95	84.181	Anolis_carolinensis
MGP_CAROLIEiJ_G0016564	Chd3	99	92.804	ENSANAG00000034323	CHD3	99	97.074	Aotus_nancymaae
MGP_CAROLIEiJ_G0016564	Chd3	98	74.665	ENSACLG00000009222	chd3	99	74.594	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0016564	Chd3	100	95.263	ENSBTAG00000014377	CHD3	98	96.282	Bos_taurus
MGP_CAROLIEiJ_G0016564	Chd3	100	97.508	ENSCJAG00000014766	CHD3	99	97.080	Callithrix_jacchus
MGP_CAROLIEiJ_G0016564	Chd3	100	95.412	ENSCAFG00000016859	CHD3	98	96.902	Canis_familiaris
MGP_CAROLIEiJ_G0016564	Chd3	96	96.948	ENSCAFG00020007422	CHD3	100	96.783	Canis_lupus_dingo
MGP_CAROLIEiJ_G0016564	Chd3	100	95.521	ENSCHIG00000016737	CHD3	99	96.854	Capra_hircus
MGP_CAROLIEiJ_G0016564	Chd3	100	97.614	ENSTSYG00000035658	CHD3	98	97.472	Carlito_syrichta
MGP_CAROLIEiJ_G0016564	Chd3	100	92.708	ENSCAPG00000014864	CHD3	99	93.703	Cavia_aperea
MGP_CAROLIEiJ_G0016564	Chd3	100	95.417	ENSCPOG00000022653	CHD3	99	96.322	Cavia_porcellus
MGP_CAROLIEiJ_G0016564	Chd3	100	97.402	ENSCCAG00000034792	CHD3	99	96.838	Cebus_capucinus
MGP_CAROLIEiJ_G0016564	Chd3	100	97.614	ENSCATG00000041717	CHD3	99	96.842	Cercocebus_atys
MGP_CAROLIEiJ_G0016564	Chd3	100	97.402	ENSCLAG00000010523	CHD3	100	97.314	Chinchilla_lanigera
MGP_CAROLIEiJ_G0016564	Chd3	100	95.729	ENSCSAG00000011122	CHD3	99	97.160	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0016564	Chd3	93	83.750	ENSCPBG00000011966	CHD3	99	87.321	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0016564	Chd3	100	97.561	ENSCANG00000037641	CHD3	98	97.472	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0016564	Chd3	100	98.408	ENSCGRG00001011306	Chd3	100	98.295	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0016564	Chd3	94	98.438	ENSCGRG00000007878	Chd3	99	98.529	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0016564	Chd3	93	83.650	ENSCSEG00000004489	chd3	98	78.351	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0016564	Chd3	96	74.369	ENSCVAG00000007293	chd3	99	74.476	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0016564	Chd3	95	77.722	ENSDARG00000021405	chd3	99	76.135	Danio_rerio
MGP_CAROLIEiJ_G0016564	Chd3	100	80.093	ENSDNOG00000047846	CHD3	98	81.919	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0016564	Chd3	100	96.872	ENSDORG00000010713	Chd3	100	96.746	Dipodomys_ordii
MGP_CAROLIEiJ_G0016564	Chd3	100	88.802	ENSETEG00000017733	CHD3	100	90.249	Echinops_telfairi
MGP_CAROLIEiJ_G0016564	Chd3	52	77.484	ENSEBUG00000008310	chd3	99	69.873	Eptatretus_burgeri
MGP_CAROLIEiJ_G0016564	Chd3	93	95.429	ENSEASG00005019360	CHD3	100	96.895	Equus_asinus_asinus
MGP_CAROLIEiJ_G0016564	Chd3	93	94.983	ENSECAG00000010051	CHD3	100	96.950	Equus_caballus
MGP_CAROLIEiJ_G0016564	Chd3	89	93.443	ENSEEUG00000015205	CHD3	92	94.444	Erinaceus_europaeus
MGP_CAROLIEiJ_G0016564	Chd3	82	90.476	ENSELUG00000019499	chd3	99	90.476	Esox_lucius
MGP_CAROLIEiJ_G0016564	Chd3	100	96.156	ENSFCAG00000009629	CHD3	99	96.156	Felis_catus
MGP_CAROLIEiJ_G0016564	Chd3	100	92.917	ENSFDAG00000008220	CHD3	99	94.470	Fukomys_damarensis
MGP_CAROLIEiJ_G0016564	Chd3	89	80.000	ENSGMOG00000013599	chd3	91	80.609	Gadus_morhua
MGP_CAROLIEiJ_G0016564	Chd3	62	74.872	ENSGAFG00000004055	chd3	99	76.068	Gambusia_affinis
MGP_CAROLIEiJ_G0016564	Chd3	99	70.607	ENSGACG00000019275	chd3	90	74.095	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0016564	Chd3	77	86.481	ENSGAGG00000013164	CHD3	98	86.753	Gopherus_agassizii
MGP_CAROLIEiJ_G0016564	Chd3	100	97.455	ENSGGOG00000013496	CHD3	98	97.368	Gorilla_gorilla
MGP_CAROLIEiJ_G0016564	Chd3	100	97.243	ENSHGLG00000012017	CHD3	100	96.830	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0016564	Chd3	89	89.184	ENSHGLG00100013902	CHD3	99	88.754	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0016564	Chd3	97	72.136	ENSHCOG00000010170	chd3	96	72.409	Hippocampus_comes
MGP_CAROLIEiJ_G0016564	Chd3	94	73.363	ENSIPUG00000003271	chd3	96	79.196	Ictalurus_punctatus
MGP_CAROLIEiJ_G0016564	Chd3	100	97.402	ENSSTOG00000025907	CHD3	100	97.314	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0016564	Chd3	100	96.554	ENSJJAG00000017633	Chd3	100	96.436	Jaculus_jaculus
MGP_CAROLIEiJ_G0016564	Chd3	87	90.047	ENSKMAG00000019292	chd3	97	75.633	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0016564	Chd3	96	71.405	ENSLBEG00000028485	chd3	91	87.826	Labrus_bergylta
MGP_CAROLIEiJ_G0016564	Chd3	99	75.000	ENSLACG00000008031	CHD3	98	74.758	Latimeria_chalumnae
MGP_CAROLIEiJ_G0016564	Chd3	99	76.663	ENSLOCG00000013965	chd3	97	76.969	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0016564	Chd3	98	91.644	ENSLAFG00000000572	CHD3	100	93.220	Loxodonta_africana
MGP_CAROLIEiJ_G0016564	Chd3	100	97.561	ENSMFAG00000020113	CHD3	98	97.472	Macaca_fascicularis
MGP_CAROLIEiJ_G0016564	Chd3	100	92.865	ENSMMUG00000022221	CHD3	99	93.841	Macaca_mulatta
MGP_CAROLIEiJ_G0016564	Chd3	100	97.561	ENSMNEG00000001728	CHD3	99	96.619	Macaca_nemestrina
MGP_CAROLIEiJ_G0016564	Chd3	100	97.614	ENSMLEG00000032249	CHD3	98	97.523	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0016564	Chd3	88	76.474	ENSMAMG00000000564	chd3	99	76.891	Mastacembelus_armatus
MGP_CAROLIEiJ_G0016564	Chd3	100	98.196	ENSMAUG00000013873	Chd3	99	97.076	Mesocricetus_auratus
MGP_CAROLIEiJ_G0016564	Chd3	100	96.741	ENSMICG00000008741	CHD3	99	96.741	Microcebus_murinus
MGP_CAROLIEiJ_G0016564	Chd3	100	98.408	ENSMOCG00000004848	Chd3	100	98.290	Microtus_ochrogaster
MGP_CAROLIEiJ_G0016564	Chd3	98	74.585	ENSMMOG00000012699	chd3	99	73.962	Mola_mola
MGP_CAROLIEiJ_G0016564	Chd3	93	93.867	ENSMODG00000007509	CHD3	100	93.955	Monodelphis_domestica
MGP_CAROLIEiJ_G0016564	Chd3	100	99.576	ENSMUSG00000018474	Chd3	99	99.576	Mus_musculus
MGP_CAROLIEiJ_G0016564	Chd3	100	99.310	MGP_PahariEiJ_G0017695	Chd3	100	99.310	Mus_pahari
MGP_CAROLIEiJ_G0016564	Chd3	100	99.523	MGP_SPRETEiJ_G0017400	Chd3	100	99.523	Mus_spretus
MGP_CAROLIEiJ_G0016564	Chd3	87	95.102	ENSMPUG00000008861	CHD3	100	96.795	Mustela_putorius_furo
MGP_CAROLIEiJ_G0016564	Chd3	100	94.225	ENSMLUG00000014643	-	98	95.590	Myotis_lucifugus
MGP_CAROLIEiJ_G0016564	Chd3	100	96.510	ENSNGAG00000000773	Chd3	98	97.920	Nannospalax_galili
MGP_CAROLIEiJ_G0016564	Chd3	88	75.850	ENSNBRG00000000636	chd3	97	76.509	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0016564	Chd3	100	94.274	ENSNLEG00000009770	CHD3	100	94.035	Nomascus_leucogenys
MGP_CAROLIEiJ_G0016564	Chd3	88	89.352	ENSMEUG00000005852	CHD3	87	90.437	Notamacropus_eugenii
MGP_CAROLIEiJ_G0016564	Chd3	95	94.326	ENSOPRG00000011069	CHD3	100	95.573	Ochotona_princeps
MGP_CAROLIEiJ_G0016564	Chd3	100	95.417	ENSODEG00000017785	CHD3	99	96.854	Octodon_degus
MGP_CAROLIEiJ_G0016564	Chd3	99	74.296	ENSONIG00000009292	chd3	100	75.013	Oreochromis_niloticus
MGP_CAROLIEiJ_G0016564	Chd3	99	90.447	ENSOCUG00000029299	CHD3	100	91.569	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0016564	Chd3	85	71.648	ENSORLG00000007107	chd3	93	72.140	Oryzias_latipes
MGP_CAROLIEiJ_G0016564	Chd3	60	72.286	ENSORLG00020008387	chd3	95	73.345	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0016564	Chd3	74	79.943	ENSOMEG00000013691	chd3	99	78.030	Oryzias_melastigma
MGP_CAROLIEiJ_G0016564	Chd3	100	95.156	ENSOGAG00000003216	CHD3	99	96.601	Otolemur_garnettii
MGP_CAROLIEiJ_G0016564	Chd3	100	92.356	ENSOARG00000017855	CHD3	99	94.478	Ovis_aries
MGP_CAROLIEiJ_G0016564	Chd3	100	95.091	ENSPPAG00000032886	CHD3	98	95.069	Pan_paniscus
MGP_CAROLIEiJ_G0016564	Chd3	100	97.026	ENSPPRG00000000626	CHD3	100	96.243	Panthera_pardus
MGP_CAROLIEiJ_G0016564	Chd3	100	97.614	ENSPTRG00000008714	CHD3	99	96.986	Pan_troglodytes
MGP_CAROLIEiJ_G0016564	Chd3	100	95.917	ENSPANG00000023938	CHD3	98	97.262	Papio_anubis
MGP_CAROLIEiJ_G0016564	Chd3	98	78.689	ENSPKIG00000006305	chd3	99	80.205	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0016564	Chd3	57	90.055	ENSPSIG00000010177	CHD3	98	90.328	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0016564	Chd3	100	96.561	ENSPEMG00000014262	Chd3	99	97.818	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0016564	Chd3	100	93.361	ENSPCIG00000005442	CHD3	99	93.176	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0016564	Chd3	99	76.617	ENSPFOG00000012464	chd3	92	75.342	Poecilia_formosa
MGP_CAROLIEiJ_G0016564	Chd3	96	71.829	ENSPLAG00000002887	chd3	94	79.909	Poecilia_latipinna
MGP_CAROLIEiJ_G0016564	Chd3	56	81.469	ENSPMEG00000016725	chd3	93	80.730	Poecilia_mexicana
MGP_CAROLIEiJ_G0016564	Chd3	99	76.013	ENSPREG00000011044	chd3	98	76.612	Poecilia_reticulata
MGP_CAROLIEiJ_G0016564	Chd3	98	92.015	ENSPPYG00000007940	CHD3	98	93.792	Pongo_abelii
MGP_CAROLIEiJ_G0016564	Chd3	96	95.841	ENSPCAG00000004350	CHD3	96	96.332	Procavia_capensis
MGP_CAROLIEiJ_G0016564	Chd3	100	97.349	ENSPCOG00000020952	CHD3	100	96.715	Propithecus_coquereli
MGP_CAROLIEiJ_G0016564	Chd3	86	93.672	ENSPVAG00000016344	CHD3	87	94.234	Pteropus_vampyrus
MGP_CAROLIEiJ_G0016564	Chd3	96	78.157	ENSPNAG00000020393	chd3	98	80.618	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0016564	Chd3	93	96.431	ENSRNOG00000009722	Chd3	100	98.311	Rattus_norvegicus
MGP_CAROLIEiJ_G0016564	Chd3	100	93.930	ENSRBIG00000033562	CHD3	99	93.545	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0016564	Chd3	100	97.614	ENSRROG00000029554	CHD3	98	97.523	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0016564	Chd3	100	97.561	ENSSBOG00000020719	CHD3	99	97.125	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0016564	Chd3	100	93.906	ENSSHAG00000014412	CHD3	100	93.727	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0016564	Chd3	90	80.893	ENSSFOG00015023123	chd3	98	75.513	Scleropages_formosus
MGP_CAROLIEiJ_G0016564	Chd3	76	90.741	ENSSMAG00000006451	chd3	99	76.310	Scophthalmus_maximus
MGP_CAROLIEiJ_G0016564	Chd3	58	72.070	ENSSDUG00000005792	chd3	95	73.035	Seriola_dumerili
MGP_CAROLIEiJ_G0016564	Chd3	99	76.793	ENSSPAG00000013694	chd3	97	81.443	Stegastes_partitus
MGP_CAROLIEiJ_G0016564	Chd3	100	95.471	ENSSSCG00000021363	CHD3	100	96.734	Sus_scrofa
MGP_CAROLIEiJ_G0016564	Chd3	79	76.311	ENSTRUG00000014990	chd3	89	75.594	Takifugu_rubripes
MGP_CAROLIEiJ_G0016564	Chd3	98	74.296	ENSTNIG00000012998	chd3	99	72.967	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0016564	Chd3	67	100.000	ENSTBEG00000011454	-	71	100.000	Tupaia_belangeri
MGP_CAROLIEiJ_G0016564	Chd3	99	95.899	ENSTTRG00000010295	CHD3	97	97.215	Tursiops_truncatus
MGP_CAROLIEiJ_G0016564	Chd3	93	94.105	ENSUAMG00000005475	CHD3	99	95.435	Ursus_americanus
MGP_CAROLIEiJ_G0016564	Chd3	58	100.000	ENSVPAG00000010794	-	62	100.000	Vicugna_pacos
MGP_CAROLIEiJ_G0016564	Chd3	98	97.016	ENSVVUG00000028011	CHD3	99	96.699	Vulpes_vulpes
MGP_CAROLIEiJ_G0016564	Chd3	99	72.893	ENSXETG00000012991	chd3	92	73.618	Xenopus_tropicalis
MGP_CAROLIEiJ_G0016564	Chd3	54	82.957	ENSXCOG00000000809	chd3	93	83.070	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0016564	Chd3	83	86.127	ENSXMAG00000016035	chd3	99	88.095	Xiphophorus_maculatus