EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0016727 (Gene tree)
Gene ID: 110304702
Gene Symbol: Tsr1
Alias: -
Full Name: TSR1%2C ribosome maturation factor
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 11593 bases
Position: chr11:69832001-69843593
Accession: 110304702
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0028197	AARP2CN	PF08142.12	2.7e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0028198	-	1369	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0028199	-	2300	-	MGP_CAROLIEiJ_P0028199	90 (aa)	-	UPI000173A925
MGP_CAROLIEiJ_T0028202	-	769	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0028200	-	542	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0028201	-	708	-	MGP_CAROLIEiJ_P0028201	40 (aa)	-	-
MGP_CAROLIEiJ_T0028196	-	1549	-	MGP_CAROLIEiJ_P0028196	65 (aa)	-	-
MGP_CAROLIEiJ_T0028197	-	3383	-	MGP_CAROLIEiJ_P0028197	803 (aa)	XP_021031896	UPI000A317BE3

Gene Model

Click here to download MGP_CAROLIEiJ_G0016727's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0016727's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.217	ENSG00000167721	TSR1	100	85.342	Homo_sapiens
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.763	ENSAPOG00000020891	tsr1	99	55.276	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0016727	Tsr1	100	84.767	ENSAMEG00000007599	TSR1	99	84.767	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0016727	Tsr1	99	55.556	ENSACIG00000007090	tsr1	99	55.515	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.541	ENSAOCG00000023284	tsr1	99	54.699	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0016727	Tsr1	94	54.395	ENSAPEG00000008452	tsr1	100	55.754	Amphiprion_percula
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.828	ENSATEG00000021961	tsr1	99	54.708	Anabas_testudineus
MGP_CAROLIEiJ_G0016727	Tsr1	92	69.314	ENSAPLG00000013422	TSR1	100	69.044	Anas_platyrhynchos
MGP_CAROLIEiJ_G0016727	Tsr1	70	57.639	ENSACAG00000000859	TSR1	92	58.406	Anolis_carolinensis
MGP_CAROLIEiJ_G0016727	Tsr1	100	86.301	ENSANAG00000031071	TSR1	100	86.301	Aotus_nancymaae
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.371	ENSACLG00000007595	tsr1	99	54.534	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0016727	Tsr1	50	48.551	ENSAMXG00000008470	tsr1	95	46.916	Astyanax_mexicanus
MGP_CAROLIEiJ_G0016727	Tsr1	100	87.313	ENSBTAG00000004225	TSR1	100	87.811	Bos_taurus
MGP_CAROLIEiJ_G0016727	Tsr1	97	39.119	WBGene00006497	tag-151	96	38.722	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.554	ENSCJAG00000012456	TSR1	100	85.554	Callithrix_jacchus
MGP_CAROLIEiJ_G0016727	Tsr1	100	84.845	ENSCAFG00000002106	-	100	85.217	Canis_familiaris
MGP_CAROLIEiJ_G0016727	Tsr1	90	84.573	ENSCAFG00000019273	-	100	86.606	Canis_familiaris
MGP_CAROLIEiJ_G0016727	Tsr1	100	84.739	ENSCAFG00020009728	TSR1	100	85.112	Canis_lupus_dingo
MGP_CAROLIEiJ_G0016727	Tsr1	100	87.438	ENSCHIG00000023935	TSR1	100	87.935	Capra_hircus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.430	ENSTSYG00000005468	TSR1	100	85.430	Carlito_syrichta
MGP_CAROLIEiJ_G0016727	Tsr1	93	85.255	ENSCPOG00000014833	TSR1	99	85.523	Cavia_porcellus
MGP_CAROLIEiJ_G0016727	Tsr1	93	86.309	ENSCCAG00000028962	TSR1	98	86.309	Cebus_capucinus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.714	ENSCATG00000044262	TSR1	100	85.714	Cercocebus_atys
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.554	ENSCLAG00000005567	TSR1	100	85.554	Chinchilla_lanigera
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.839	ENSCSAG00000013788	TSR1	100	85.839	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0016727	Tsr1	99	68.789	ENSCPBG00000020363	TSR1	97	68.936	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0016727	Tsr1	97	45.076	ENSCING00000020658	-	99	45.076	Ciona_intestinalis
MGP_CAROLIEiJ_G0016727	Tsr1	97	44.724	ENSCSAVG00000001875	-	100	44.110	Ciona_savignyi
MGP_CAROLIEiJ_G0016727	Tsr1	100	75.990	ENSCANG00000033056	TSR1	100	87.774	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0016727	Tsr1	100	91.791	ENSCGRG00001023942	Tsr1	100	91.542	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0016727	Tsr1	100	83.811	ENSCGRG00000013015	Tsr1	100	85.679	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.253	ENSCSEG00000013009	tsr1	99	53.809	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.655	ENSCVAG00000000506	tsr1	99	55.461	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.024	ENSDARG00000007744	tsr1	99	54.878	Danio_rerio
MGP_CAROLIEiJ_G0016727	Tsr1	100	84.184	ENSDNOG00000004715	TSR1	100	85.903	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0016727	Tsr1	97	74.807	ENSDORG00000023234	-	100	74.550	Dipodomys_ordii
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.572	ENSDORG00000016371	-	100	85.572	Dipodomys_ordii
MGP_CAROLIEiJ_G0016727	Tsr1	97	43.052	FBgn0037073	Tsr1	96	43.672	Drosophila_melanogaster
MGP_CAROLIEiJ_G0016727	Tsr1	92	88.197	ENSETEG00000017534	TSR1	92	88.197	Echinops_telfairi
MGP_CAROLIEiJ_G0016727	Tsr1	94	52.880	ENSEBUG00000013731	TSR1	97	52.880	Eptatretus_burgeri
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.945	ENSEASG00005009302	TSR1	97	86.443	Equus_asinus_asinus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.697	ENSECAG00000009114	TSR1	100	86.194	Equus_caballus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.524	ENSELUG00000020984	tsr1	95	53.735	Esox_lucius
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.323	ENSFCAG00000006313	TSR1	100	85.448	Felis_catus
MGP_CAROLIEiJ_G0016727	Tsr1	99	68.395	ENSFALG00000006532	TSR1	99	69.259	Ficedula_albicollis
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.554	ENSFDAG00000006038	TSR1	100	85.305	Fukomys_damarensis
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.772	ENSFHEG00000003626	tsr1	99	54.970	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0016727	Tsr1	99	52.561	ENSGMOG00000010336	tsr1	99	53.650	Gadus_morhua
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.373	ENSGAFG00000012993	tsr1	99	53.688	Gambusia_affinis
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.129	ENSGACG00000010843	tsr1	99	53.968	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0016727	Tsr1	99	69.009	ENSGAGG00000025619	-	99	68.532	Gopherus_agassizii
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.590	ENSGGOG00000001704	TSR1	100	85.714	Gorilla_gorilla
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.371	ENSHBUG00000017904	tsr1	100	55.243	Haplochromis_burtoni
MGP_CAROLIEiJ_G0016727	Tsr1	97	76.448	ENSHGLG00000015688	-	99	76.448	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.821	ENSHGLG00000012806	-	100	85.697	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.821	ENSHGLG00100015392	TSR1	100	85.697	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0016727	Tsr1	99	56.506	ENSHCOG00000001432	tsr1	99	56.258	Hippocampus_comes
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.976	ENSIPUG00000004618	tsr1	99	55.596	Ictalurus_punctatus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.112	ENSSTOG00000011819	TSR1	100	85.732	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0016727	Tsr1	92	81.818	ENSJJAG00000019505	Tsr1	95	81.818	Jaculus_jaculus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.486	ENSKMAG00000005763	tsr1	99	53.317	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.477	ENSLBEG00000021823	tsr1	99	54.031	Labrus_bergylta
MGP_CAROLIEiJ_G0016727	Tsr1	99	63.882	ENSLACG00000002197	TSR1	99	63.882	Latimeria_chalumnae
MGP_CAROLIEiJ_G0016727	Tsr1	90	57.079	ENSLOCG00000006491	TSR1	97	58.122	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.963	ENSMFAG00000021330	TSR1	100	85.963	Macaca_fascicularis
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.590	ENSMMUG00000017519	TSR1	100	85.590	Macaca_mulatta
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.590	ENSMNEG00000031382	TSR1	100	85.590	Macaca_nemestrina
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.590	ENSMLEG00000036733	TSR1	100	85.590	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.864	ENSMAMG00000017918	tsr1	99	54.296	Mastacembelus_armatus
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.665	ENSMZEG00005007477	tsr1	99	54.831	Maylandia_zebra
MGP_CAROLIEiJ_G0016727	Tsr1	99	67.407	ENSMGAG00000005576	TSR1	99	68.272	Meleagris_gallopavo
MGP_CAROLIEiJ_G0016727	Tsr1	100	86.318	ENSMICG00000012943	TSR1	100	86.443	Microcebus_murinus
MGP_CAROLIEiJ_G0016727	Tsr1	100	90.174	ENSMOCG00000022764	Tsr1	100	90.796	Microtus_ochrogaster
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.949	ENSMMOG00000014280	tsr1	99	54.756	Mola_mola
MGP_CAROLIEiJ_G0016727	Tsr1	100	77.488	ENSMODG00000010658	TSR1	100	77.488	Monodelphis_domestica
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.782	ENSMALG00000011681	tsr1	99	54.940	Monopterus_albus
MGP_CAROLIEiJ_G0016727	Tsr1	100	97.883	ENSMUSG00000038335	Tsr1	100	97.883	Mus_musculus
MGP_CAROLIEiJ_G0016727	Tsr1	100	97.136	MGP_PahariEiJ_G0017864	Tsr1	100	97.136	Mus_pahari
MGP_CAROLIEiJ_G0016727	Tsr1	100	98.132	MGP_SPRETEiJ_G0017570	Tsr1	100	98.132	Mus_spretus
MGP_CAROLIEiJ_G0016727	Tsr1	82	85.823	ENSMPUG00000013000	TSR1	100	86.280	Mustela_putorius_furo
MGP_CAROLIEiJ_G0016727	Tsr1	100	86.816	ENSMLUG00000003505	TSR1	100	87.189	Myotis_lucifugus
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.132	ENSNBRG00000020728	tsr1	99	54.272	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0016727	Tsr1	100	77.143	ENSNLEG00000017184	TSR1	100	79.950	Nomascus_leucogenys
MGP_CAROLIEiJ_G0016727	Tsr1	100	72.671	ENSMEUG00000015828	TSR1	100	72.840	Notamacropus_eugenii
MGP_CAROLIEiJ_G0016727	Tsr1	99	55.461	ENSONIG00000013131	tsr1	99	55.461	Oreochromis_niloticus
MGP_CAROLIEiJ_G0016727	Tsr1	96	72.587	ENSOANG00000008637	TSR1	100	72.329	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0016727	Tsr1	100	84.950	ENSOCUG00000014256	TSR1	100	85.323	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.772	ENSORLG00000004926	tsr1	99	55.048	Oryzias_latipes
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.837	ENSORLG00020008792	tsr1	99	54.874	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.653	ENSORLG00015013838	tsr1	99	54.928	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.966	ENSOMEG00000004830	tsr1	99	55.529	Oryzias_melastigma
MGP_CAROLIEiJ_G0016727	Tsr1	100	84.938	ENSOGAG00000004492	TSR1	100	84.938	Otolemur_garnettii
MGP_CAROLIEiJ_G0016727	Tsr1	100	87.687	ENSOARG00000015437	TSR1	97	88.184	Ovis_aries
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.342	ENSPPAG00000036355	TSR1	100	85.466	Pan_paniscus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.075	ENSPPRG00000015519	-	100	85.199	Panthera_pardus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.323	ENSPTIG00000010608	TSR1	100	85.448	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.342	ENSPTRG00000008547	TSR1	100	85.466	Pan_troglodytes
MGP_CAROLIEiJ_G0016727	Tsr1	100	82.609	ENSPANG00000024463	TSR1	100	82.857	Papio_anubis
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.244	ENSPKIG00000013972	tsr1	99	54.568	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0016727	Tsr1	88	68.362	ENSPSIG00000018258	TSR1	100	68.079	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0016727	Tsr1	99	55.474	ENSPMGG00000011577	tsr1	99	56.049	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0016727	Tsr1	100	91.158	ENSPEMG00000018033	Tsr1	100	91.158	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0016727	Tsr1	100	77.104	ENSPCIG00000009357	TSR1	98	77.228	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.528	ENSPFOG00000004483	TSR1	99	55.273	Poecilia_formosa
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.310	ENSPLAG00000022320	tsr1	99	54.803	Poecilia_latipinna
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.054	ENSPMEG00000004577	tsr1	99	54.142	Poecilia_mexicana
MGP_CAROLIEiJ_G0016727	Tsr1	97	53.713	ENSPREG00000010354	tsr1	95	54.017	Poecilia_reticulata
MGP_CAROLIEiJ_G0016727	Tsr1	100	77.874	ENSPPYG00000007792	TSR1	100	77.379	Pongo_abelii
MGP_CAROLIEiJ_G0016727	Tsr1	53	90.698	ENSPCAG00000012973	-	72	90.698	Procavia_capensis
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.945	ENSPCOG00000017928	TSR1	100	86.070	Propithecus_coquereli
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.803	ENSPVAG00000002162	TSR1	100	85.803	Pteropus_vampyrus
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.491	ENSPNYG00000016163	tsr1	99	54.655	Pundamilia_nyererei
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.800	ENSPNAG00000008659	tsr1	99	54.122	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0016727	Tsr1	100	92.786	ENSRNOG00000002980	Tsr1	100	94.154	Rattus_norvegicus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.839	ENSRBIG00000040016	TSR1	100	85.839	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.839	ENSRROG00000030361	TSR1	100	85.839	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0016727	Tsr1	96	31.196	YDL060W	-	98	31.073	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0016727	Tsr1	100	86.052	ENSSBOG00000020785	TSR1	100	86.052	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0016727	Tsr1	100	75.062	ENSSHAG00000011394	TSR1	100	75.062	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0016727	Tsr1	99	55.447	ENSSFOG00015005455	tsr1	99	55.800	Scleropages_formosus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.245	ENSSMAG00000009504	tsr1	99	53.772	Scophthalmus_maximus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.644	ENSSDUG00000012074	tsr1	99	54.022	Seriola_dumerili
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.077	ENSSLDG00000002031	tsr1	99	54.392	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0016727	Tsr1	100	72.139	ENSSARG00000000759	TSR1	100	72.761	Sorex_araneus
MGP_CAROLIEiJ_G0016727	Tsr1	99	67.405	ENSSPUG00000007042	TSR1	99	67.159	Sphenodon_punctatus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.237	ENSSPAG00000021951	tsr1	99	55.090	Stegastes_partitus
MGP_CAROLIEiJ_G0016727	Tsr1	100	87.313	ENSSSCG00000038534	TSR1	100	87.313	Sus_scrofa
MGP_CAROLIEiJ_G0016727	Tsr1	90	70.685	ENSTGUG00000005883	TSR1	100	70.765	Taeniopygia_guttata
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.545	ENSTRUG00000004665	tsr1	99	55.839	Takifugu_rubripes
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.994	ENSTNIG00000016196	tsr1	99	55.240	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0016727	Tsr1	67	90.000	ENSTBEG00000015275	-	67	90.000	Tupaia_belangeri
MGP_CAROLIEiJ_G0016727	Tsr1	100	86.318	ENSTTRG00000001177	TSR1	100	86.318	Tursiops_truncatus
MGP_CAROLIEiJ_G0016727	Tsr1	100	85.276	ENSUAMG00000025160	TSR1	100	85.276	Ursus_americanus
MGP_CAROLIEiJ_G0016727	Tsr1	97	85.166	ENSUMAG00000009294	TSR1	98	86.010	Ursus_maritimus
MGP_CAROLIEiJ_G0016727	Tsr1	84	82.467	ENSVPAG00000000228	TSR1	100	81.724	Vicugna_pacos
MGP_CAROLIEiJ_G0016727	Tsr1	100	84.348	ENSVVUG00000021767	TSR1	100	84.720	Vulpes_vulpes
MGP_CAROLIEiJ_G0016727	Tsr1	99	58.701	ENSXETG00000023797	tsr1	100	60.345	Xenopus_tropicalis
MGP_CAROLIEiJ_G0016727	Tsr1	99	54.945	ENSXCOG00000009635	tsr1	99	55.760	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0016727	Tsr1	99	53.373	ENSXMAG00000001397	tsr1	96	54.293	Xiphophorus_maculatus