EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0016729 (Gene tree)
Gene ID: 110304701
Gene Symbol: Smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 235526 bases
Position: chr11:69857988-70093513
Accession: 110304701
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0028213	EST1	PF10374.9	6.9e-14	1	1
MGP_CAROLIEiJ_P0028213	EST1_DNA_bind	PF10373.9	1.7e-59	1	1
MGP_CAROLIEiJ_P0028216	EST1_DNA_bind	PF10373.9	6.2e-10	1	1
MGP_CAROLIEiJ_P0028213	PIN_4	PF13638.6	8.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0028218	-	637	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0028213	-	5898	XM_021176232	MGP_CAROLIEiJ_P0028213	1418 (aa)	XP_021031891	UPI000A3195AF
MGP_CAROLIEiJ_T0028215	-	2186	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0028214	-	4129	-	MGP_CAROLIEiJ_P0028214	355 (aa)	-	-
MGP_CAROLIEiJ_T0028217	-	487	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0028216	-	714	-	MGP_CAROLIEiJ_P0028216	238 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0016729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0016729's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0016729	Smg6	100	90.909	ENSG00000070366	SMG6	100	97.652	Homo_sapiens
MGP_CAROLIEiJ_G0016729	Smg6	95	67.155	ENSAPOG00000019448	smg6	74	54.219	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.543	ENSAMEG00000007632	SMG6	100	91.543	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0016729	Smg6	96	65.352	ENSAOCG00000002630	smg6	74	54.382	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	ENSAPEG00000019101	smg6	74	54.460	Amphiprion_percula
MGP_CAROLIEiJ_G0016729	Smg6	98	63.315	ENSATEG00000006483	smg6	73	54.694	Anabas_testudineus
MGP_CAROLIEiJ_G0016729	Smg6	98	70.950	ENSACAG00000011783	SMG6	99	57.774	Anolis_carolinensis
MGP_CAROLIEiJ_G0016729	Smg6	100	91.050	ENSANAG00000035760	SMG6	100	91.050	Aotus_nancymaae
MGP_CAROLIEiJ_G0016729	Smg6	96	65.352	ENSACLG00000005288	smg6	80	54.496	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0016729	Smg6	97	66.000	ENSAMXG00000017326	smg6	99	50.173	Astyanax_mexicanus
MGP_CAROLIEiJ_G0016729	Smg6	96	95.882	ENSBTAG00000000267	SMG6	100	91.402	Bos_taurus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.121	ENSCJAG00000001820	SMG6	100	91.121	Callithrix_jacchus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.191	ENSCAFG00000019260	SMG6	100	91.191	Canis_familiaris
MGP_CAROLIEiJ_G0016729	Smg6	100	91.191	ENSCAFG00020009770	SMG6	100	91.191	Canis_lupus_dingo
MGP_CAROLIEiJ_G0016729	Smg6	98	95.677	ENSCHIG00000021998	SMG6	100	91.402	Capra_hircus
MGP_CAROLIEiJ_G0016729	Smg6	100	90.909	ENSTSYG00000003406	SMG6	100	97.652	Carlito_syrichta
MGP_CAROLIEiJ_G0016729	Smg6	98	76.331	ENSCAPG00000016197	SMG6	99	83.138	Cavia_aperea
MGP_CAROLIEiJ_G0016729	Smg6	99	93.249	ENSCPOG00000014878	SMG6	99	93.249	Cavia_porcellus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.402	ENSCCAG00000035801	SMG6	100	91.402	Cebus_capucinus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.473	ENSCATG00000031956	SMG6	100	91.473	Cercocebus_atys
MGP_CAROLIEiJ_G0016729	Smg6	100	93.697	ENSCLAG00000006748	SMG6	100	93.697	Chinchilla_lanigera
MGP_CAROLIEiJ_G0016729	Smg6	100	91.825	ENSCSAG00000013800	SMG6	100	91.825	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0016729	Smg6	57	98.507	ENSCHOG00000005024	-	73	98.507	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0016729	Smg6	98	82.997	ENSCPBG00000020369	SMG6	100	71.975	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0016729	Smg6	68	35.260	ENSCING00000010099	-	99	35.305	Ciona_intestinalis
MGP_CAROLIEiJ_G0016729	Smg6	95	94.690	ENSCANG00000031764	SMG6	100	97.260	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0016729	Smg6	67	98.745	ENSCGRG00001019595	Smg6	98	93.726	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0016729	Smg6	98	93.084	ENSCGRG00000007782	Smg6	100	88.681	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0016729	Smg6	96	63.483	ENSCSEG00000012757	smg6	93	51.497	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0016729	Smg6	87	67.619	ENSCVAG00000012789	smg6	74	52.991	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0016729	Smg6	92	66.967	ENSDARG00000100481	smg6	100	50.572	Danio_rerio
MGP_CAROLIEiJ_G0016729	Smg6	100	90.698	ENSDNOG00000048283	SMG6	100	90.698	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0016729	Smg6	93	97.297	ENSDORG00000016614	Smg6	94	97.297	Dipodomys_ordii
MGP_CAROLIEiJ_G0016729	Smg6	93	100.000	ENSETEG00000016790	SMG6	93	100.000	Echinops_telfairi
MGP_CAROLIEiJ_G0016729	Smg6	98	49.570	ENSEBUG00000005059	smg6	71	49.419	Eptatretus_burgeri
MGP_CAROLIEiJ_G0016729	Smg6	99	91.531	ENSEASG00005009318	SMG6	99	91.531	Equus_asinus_asinus
MGP_CAROLIEiJ_G0016729	Smg6	99	91.531	ENSECAG00000006519	SMG6	99	91.531	Equus_caballus
MGP_CAROLIEiJ_G0016729	Smg6	100	80.550	ENSEEUG00000003493	SMG6	100	80.550	Erinaceus_europaeus
MGP_CAROLIEiJ_G0016729	Smg6	91	68.693	ENSELUG00000005934	smg6	67	56.142	Esox_lucius
MGP_CAROLIEiJ_G0016729	Smg6	100	91.966	ENSFCAG00000028817	SMG6	100	91.966	Felis_catus
MGP_CAROLIEiJ_G0016729	Smg6	98	81.268	ENSFALG00000006538	SMG6	100	71.724	Ficedula_albicollis
MGP_CAROLIEiJ_G0016729	Smg6	100	93.697	ENSFDAG00000015106	SMG6	100	93.697	Fukomys_damarensis
MGP_CAROLIEiJ_G0016729	Smg6	87	68.571	ENSFHEG00000013282	smg6	74	53.162	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0016729	Smg6	83	56.459	ENSGMOG00000019077	smg6	58	68.224	Gadus_morhua
MGP_CAROLIEiJ_G0016729	Smg6	98	80.980	ENSGALG00000003108	SMG6	98	71.468	Gallus_gallus
MGP_CAROLIEiJ_G0016729	Smg6	87	69.206	ENSGAFG00000000379	smg6	74	53.532	Gambusia_affinis
MGP_CAROLIEiJ_G0016729	Smg6	98	64.560	ENSGACG00000020521	smg6	100	52.829	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0016729	Smg6	98	82.421	ENSGAGG00000025617	SMG6	100	71.926	Gopherus_agassizii
MGP_CAROLIEiJ_G0016729	Smg6	100	91.614	ENSGGOG00000017156	SMG6	100	91.614	Gorilla_gorilla
MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	ENSHBUG00000021311	smg6	74	54.730	Haplochromis_burtoni
MGP_CAROLIEiJ_G0016729	Smg6	100	93.277	ENSHGLG00000012882	SMG6	100	93.277	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0016729	Smg6	100	93.277	ENSHGLG00100017815	SMG6	100	93.277	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0016729	Smg6	90	64.506	ENSHCOG00000008761	smg6	96	53.240	Hippocampus_comes
MGP_CAROLIEiJ_G0016729	Smg6	98	67.806	ENSIPUG00000012493	smg6	75	55.369	Ictalurus_punctatus
MGP_CAROLIEiJ_G0016729	Smg6	100	94.958	ENSSTOG00000028127	SMG6	100	94.958	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0016729	Smg6	98	96.542	ENSJJAG00000015367	Smg6	95	88.215	Jaculus_jaculus
MGP_CAROLIEiJ_G0016729	Smg6	98	63.934	ENSKMAG00000000279	smg6	85	54.196	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0016729	Smg6	96	65.915	ENSLBEG00000002184	smg6	73	53.359	Labrus_bergylta
MGP_CAROLIEiJ_G0016729	Smg6	77	83.212	ENSLACG00000000806	-	98	59.433	Latimeria_chalumnae
MGP_CAROLIEiJ_G0016729	Smg6	93	80.631	ENSLACG00000003276	SMG6	100	80.000	Latimeria_chalumnae
MGP_CAROLIEiJ_G0016729	Smg6	97	67.614	ENSLOCG00000006448	smg6	99	54.026	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0016729	Smg6	100	90.063	ENSLAFG00000001261	SMG6	100	90.063	Loxodonta_africana
MGP_CAROLIEiJ_G0016729	Smg6	100	91.684	ENSMFAG00000003394	SMG6	100	91.684	Macaca_fascicularis
MGP_CAROLIEiJ_G0016729	Smg6	100	91.614	ENSMMUG00000023161	SMG6	100	91.614	Macaca_mulatta
MGP_CAROLIEiJ_G0016729	Smg6	95	94.248	ENSMNEG00000044592	SMG6	100	87.131	Macaca_nemestrina
MGP_CAROLIEiJ_G0016729	Smg6	93	97.368	ENSMLEG00000029353	SMG6	100	97.368	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0016729	Smg6	96	66.479	ENSMAMG00000020119	smg6	79	55.556	Mastacembelus_armatus
MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	ENSMZEG00005024736	smg6	74	54.617	Maylandia_zebra
MGP_CAROLIEiJ_G0016729	Smg6	52	90.244	ENSMGAG00000017200	-	100	85.286	Meleagris_gallopavo
MGP_CAROLIEiJ_G0016729	Smg6	98	81.268	ENSMGAG00000005401	-	99	65.658	Meleagris_gallopavo
MGP_CAROLIEiJ_G0016729	Smg6	96	96.507	ENSMAUG00000017203	-	99	96.507	Mesocricetus_auratus
MGP_CAROLIEiJ_G0016729	Smg6	100	92.812	ENSMICG00000012913	SMG6	100	92.812	Microcebus_murinus
MGP_CAROLIEiJ_G0016729	Smg6	99	95.339	ENSMOCG00000019924	-	99	95.339	Microtus_ochrogaster
MGP_CAROLIEiJ_G0016729	Smg6	97	63.739	ENSMMOG00000010883	smg6	77	56.003	Mola_mola
MGP_CAROLIEiJ_G0016729	Smg6	81	45.641	ENSMODG00000024395	-	99	40.509	Monodelphis_domestica
MGP_CAROLIEiJ_G0016729	Smg6	81	44.898	ENSMODG00000024410	-	99	41.292	Monodelphis_domestica
MGP_CAROLIEiJ_G0016729	Smg6	83	45.545	ENSMODG00000024463	-	99	42.074	Monodelphis_domestica
MGP_CAROLIEiJ_G0016729	Smg6	96	92.140	ENSMODG00000010622	SMG6	100	85.302	Monodelphis_domestica
MGP_CAROLIEiJ_G0016729	Smg6	73	48.864	ENSMODG00000024460	-	99	41.879	Monodelphis_domestica
MGP_CAROLIEiJ_G0016729	Smg6	98	65.217	ENSMALG00000001106	smg6	73	54.869	Monopterus_albus
MGP_CAROLIEiJ_G0016729	Smg6	100	98.739	ENSMUSG00000038290	Smg6	100	98.739	Mus_musculus
MGP_CAROLIEiJ_G0016729	Smg6	100	98.739	MGP_PahariEiJ_G0017866	Smg6	100	98.739	Mus_pahari
MGP_CAROLIEiJ_G0016729	Smg6	100	98.801	MGP_SPRETEiJ_G0017572	Smg6	100	98.801	Mus_spretus
MGP_CAROLIEiJ_G0016729	Smg6	98	94.813	ENSMPUG00000013046	SMG6	100	91.402	Mustela_putorius_furo
MGP_CAROLIEiJ_G0016729	Smg6	100	90.627	ENSMLUG00000005739	SMG6	100	90.627	Myotis_lucifugus
MGP_CAROLIEiJ_G0016729	Smg6	100	94.118	ENSNGAG00000007287	Smg6	100	94.118	Nannospalax_galili
MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	ENSNBRG00000009511	smg6	80	54.069	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0016729	Smg6	96	94.135	ENSNLEG00000017171	SMG6	100	97.456	Nomascus_leucogenys
MGP_CAROLIEiJ_G0016729	Smg6	96	91.266	ENSMEUG00000015804	SMG6	100	81.753	Notamacropus_eugenii
MGP_CAROLIEiJ_G0016729	Smg6	71	89.412	ENSOPRG00000000579	SMG6	83	98.421	Ochotona_princeps
MGP_CAROLIEiJ_G0016729	Smg6	95	93.833	ENSODEG00000008038	SMG6	100	85.222	Octodon_degus
MGP_CAROLIEiJ_G0016729	Smg6	98	64.481	ENSONIG00000005594	smg6	100	51.335	Oreochromis_niloticus
MGP_CAROLIEiJ_G0016729	Smg6	98	87.608	ENSOANG00000021103	-	100	86.726	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.626	ENSOCUG00000013018	SMG6	100	91.766	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0016729	Smg6	95	65.029	ENSORLG00000003317	smg6	74	53.997	Oryzias_latipes
MGP_CAROLIEiJ_G0016729	Smg6	95	65.029	ENSORLG00020015343	smg6	74	53.574	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0016729	Smg6	95	65.318	ENSORLG00015020454	smg6	74	53.997	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0016729	Smg6	97	63.324	ENSOMEG00000010838	smg6	75	53.402	Oryzias_melastigma
MGP_CAROLIEiJ_G0016729	Smg6	100	92.113	ENSOGAG00000004483	SMG6	100	92.113	Otolemur_garnettii
MGP_CAROLIEiJ_G0016729	Smg6	98	95.677	ENSOARG00000015076	SMG6	100	91.191	Ovis_aries
MGP_CAROLIEiJ_G0016729	Smg6	100	91.543	ENSPPAG00000043296	SMG6	100	91.543	Pan_paniscus
MGP_CAROLIEiJ_G0016729	Smg6	100	92.107	ENSPPRG00000014581	SMG6	100	92.107	Panthera_pardus
MGP_CAROLIEiJ_G0016729	Smg6	98	92.130	ENSPTIG00000008925	SMG6	100	98.043	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0016729	Smg6	100	91.543	ENSPTRG00000008544	SMG6	100	97.652	Pan_troglodytes
MGP_CAROLIEiJ_G0016729	Smg6	100	91.684	ENSPANG00000024588	SMG6	100	91.684	Papio_anubis
MGP_CAROLIEiJ_G0016729	Smg6	98	82.133	ENSPSIG00000006660	SMG6	96	69.961	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0016729	Smg6	97	62.264	ENSPMGG00000000844	smg6	89	59.873	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0016729	Smg6	98	97.695	ENSPEMG00000020707	Smg6	98	97.817	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0016729	Smg6	87	69.524	ENSPFOG00000012035	smg6	100	50.502	Poecilia_formosa
MGP_CAROLIEiJ_G0016729	Smg6	87	69.206	ENSPLAG00000017660	smg6	74	53.428	Poecilia_latipinna
MGP_CAROLIEiJ_G0016729	Smg6	87	69.524	ENSPMEG00000000258	smg6	74	53.743	Poecilia_mexicana
MGP_CAROLIEiJ_G0016729	Smg6	87	69.206	ENSPREG00000010066	smg6	74	53.538	Poecilia_reticulata
MGP_CAROLIEiJ_G0016729	Smg6	100	86.217	ENSPPYG00000007790	SMG6	100	86.217	Pongo_abelii
MGP_CAROLIEiJ_G0016729	Smg6	96	91.496	ENSPCAG00000000552	SMG6	100	86.187	Procavia_capensis
MGP_CAROLIEiJ_G0016729	Smg6	100	92.319	ENSPCOG00000020925	SMG6	100	92.319	Propithecus_coquereli
MGP_CAROLIEiJ_G0016729	Smg6	95	93.363	ENSPVAG00000002159	SMG6	86	100.000	Pteropus_vampyrus
MGP_CAROLIEiJ_G0016729	Smg6	98	64.208	ENSPNYG00000024151	smg6	79	56.543	Pundamilia_nyererei
MGP_CAROLIEiJ_G0016729	Smg6	100	51.422	ENSPNAG00000015480	smg6	90	52.648	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0016729	Smg6	100	97.465	ENSRNOG00000003041	Smg6	100	97.179	Rattus_norvegicus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.684	ENSRBIG00000024746	SMG6	100	91.684	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0016729	Smg6	100	91.755	ENSRROG00000030423	SMG6	100	96.869	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0016729	Smg6	100	91.191	ENSSBOG00000022518	SMG6	100	89.570	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0016729	Smg6	79	40.933	ENSSHAG00000000380	-	99	39.130	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0016729	Smg6	98	89.625	ENSSHAG00000010045	SMG6	98	84.252	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0016729	Smg6	97	66.572	ENSSFOG00015005436	smg6	70	57.109	Scleropages_formosus
MGP_CAROLIEiJ_G0016729	Smg6	98	66.120	ENSSMAG00000019777	smg6	73	54.560	Scophthalmus_maximus
MGP_CAROLIEiJ_G0016729	Smg6	98	64.946	ENSSDUG00000016412	smg6	74	54.666	Seriola_dumerili
MGP_CAROLIEiJ_G0016729	Smg6	98	64.946	ENSSLDG00000020747	smg6	77	53.710	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0016729	Smg6	96	80.519	ENSSPUG00000007152	SMG6	99	69.526	Sphenodon_punctatus
MGP_CAROLIEiJ_G0016729	Smg6	98	63.934	ENSSPAG00000015633	smg6	74	54.718	Stegastes_partitus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.050	ENSSSCG00000017826	SMG6	100	91.050	Sus_scrofa
MGP_CAROLIEiJ_G0016729	Smg6	98	80.115	ENSTGUG00000005836	SMG6	100	71.910	Taeniopygia_guttata
MGP_CAROLIEiJ_G0016729	Smg6	98	63.395	ENSTRUG00000000358	smg6	81	55.214	Takifugu_rubripes
MGP_CAROLIEiJ_G0016729	Smg6	92	68.373	ENSTNIG00000016164	smg6	100	49.339	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0016729	Smg6	96	97.794	ENSTBEG00000011424	SMG6	100	87.377	Tupaia_belangeri
MGP_CAROLIEiJ_G0016729	Smg6	95	94.248	ENSTTRG00000001175	SMG6	91	91.364	Tursiops_truncatus
MGP_CAROLIEiJ_G0016729	Smg6	100	91.491	ENSUAMG00000025152	SMG6	100	91.427	Ursus_americanus
MGP_CAROLIEiJ_G0016729	Smg6	95	95.549	ENSUMAG00000009306	SMG6	100	91.769	Ursus_maritimus
MGP_CAROLIEiJ_G0016729	Smg6	85	92.593	ENSVPAG00000000225	SMG6	88	92.593	Vicugna_pacos
MGP_CAROLIEiJ_G0016729	Smg6	100	90.839	ENSVVUG00000021727	SMG6	100	90.839	Vulpes_vulpes
MGP_CAROLIEiJ_G0016729	Smg6	98	68.876	ENSXETG00000023799	SMG6	100	59.088	Xenopus_tropicalis
MGP_CAROLIEiJ_G0016729	Smg6	98	62.881	ENSXCOG00000009867	smg6	74	54.560	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0016729	Smg6	87	68.571	ENSXMAG00000010321	smg6	74	53.846	Xiphophorus_maculatus