EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0016730 (Gene tree)
Gene ID: 110305727
Gene Symbol: -
Alias: -
Full Name: -
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 4941 bases
Position: chr11:70093630-70098570
Accession: -
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0028219	zf-C2H2	PF00096.26	4.1e-21	1	4
MGP_CAROLIEiJ_P0028219	zf-C2H2	PF00096.26	4.1e-21	2	4
MGP_CAROLIEiJ_P0028219	zf-C2H2	PF00096.26	4.1e-21	3	4
MGP_CAROLIEiJ_P0028219	zf-C2H2	PF00096.26	4.1e-21	4	4
MGP_CAROLIEiJ_P0028219	zf-met	PF12874.7	9.1e-09	1	2
MGP_CAROLIEiJ_P0028219	zf-met	PF12874.7	9.1e-09	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0028219	-	3491	-	MGP_CAROLIEiJ_P0028219	892 (aa)	-	-
MGP_CAROLIEiJ_T0028220	-	645	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0016730's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0016730's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0016730	-	66	46.761	MGP_CAROLIEiJ_G0020510	Hic2	96	45.048

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0016730	-	81	95.423	ENSG00000177374	HIC1	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0016730	-	80	48.293	ENSAPOG00000020900	hic1	97	48.210	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0016730	-	70	92.476	ENSAMEG00000007657	HIC1	98	89.277	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0016730	-	80	48.428	ENSACIG00000007124	hic1	100	47.141	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0016730	-	80	48.065	ENSAOCG00000023291	hic1	97	47.667	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0016730	-	80	50.068	ENSAPEG00000008510	hic1	89	59.701	Amphiprion_percula
MGP_CAROLIEiJ_G0016730	-	80	48.796	ENSATEG00000021972	hic1	97	47.194	Anabas_testudineus
MGP_CAROLIEiJ_G0016730	-	81	90.509	ENSANAG00000037442	HIC1	98	91.148	Aotus_nancymaae
MGP_CAROLIEiJ_G0016730	-	82	48.034	ENSACLG00000007589	hic1	97	46.934	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0016730	-	80	49.565	ENSAMXG00000024869	hic1	97	49.103	Astyanax_mexicanus
MGP_CAROLIEiJ_G0016730	-	94	91.558	ENSBTAG00000025130	HIC1	98	95.284	Bos_taurus
MGP_CAROLIEiJ_G0016730	-	81	94.183	ENSCJAG00000042739	HIC1	98	94.183	Callithrix_jacchus
MGP_CAROLIEiJ_G0016730	-	81	94.868	ENSCAFG00000019257	HIC1	98	94.868	Canis_familiaris
MGP_CAROLIEiJ_G0016730	-	80	94.818	ENSCAFG00020009802	HIC1	100	94.818	Canis_lupus_dingo
MGP_CAROLIEiJ_G0016730	-	81	95.562	ENSCHIG00000015829	HIC1	98	95.562	Capra_hircus
MGP_CAROLIEiJ_G0016730	-	56	96.970	ENSTSYG00000032991	HIC1	97	98.958	Carlito_syrichta
MGP_CAROLIEiJ_G0016730	-	93	89.904	ENSCPOG00000020382	HIC1	98	93.343	Cavia_porcellus
MGP_CAROLIEiJ_G0016730	-	81	93.620	ENSCCAG00000030944	HIC1	98	93.620	Cebus_capucinus
MGP_CAROLIEiJ_G0016730	-	81	95.007	ENSCATG00000037347	HIC1	98	95.007	Cercocebus_atys
MGP_CAROLIEiJ_G0016730	-	81	94.868	ENSCLAG00000008072	HIC1	98	93.897	Chinchilla_lanigera
MGP_CAROLIEiJ_G0016730	-	81	95.146	ENSCSAG00000013805	HIC1	98	95.146	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0016730	-	74	60.597	ENSCPBG00000000255	HIC1	98	59.911	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0016730	-	91	94.815	ENSCGRG00001018912	Hic1	98	97.781	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0016730	-	96	88.628	ENSCGRG00000008158	Hic1	98	92.233	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0016730	-	80	48.181	ENSCSEG00000013032	hic1	94	46.776	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0016730	-	80	49.875	ENSDARG00000055493	hic1	100	47.887	Danio_rerio
MGP_CAROLIEiJ_G0016730	-	83	93.767	ENSDNOG00000049226	HIC1	95	93.767	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0016730	-	72	98.347	ENSDORG00000027749	Hic1	76	98.347	Dipodomys_ordii
MGP_CAROLIEiJ_G0016730	-	80	94.958	ENSEASG00005009326	HIC1	100	94.398	Equus_asinus_asinus
MGP_CAROLIEiJ_G0016730	-	81	94.730	ENSECAG00000030580	HIC1	98	94.175	Equus_caballus
MGP_CAROLIEiJ_G0016730	-	80	48.272	ENSELUG00000001329	hic1	97	48.492	Esox_lucius
MGP_CAROLIEiJ_G0016730	-	81	95.423	ENSFCAG00000025756	HIC1	98	95.423	Felis_catus
MGP_CAROLIEiJ_G0016730	-	79	60.976	ENSFALG00000006543	HIC1	99	59.159	Ficedula_albicollis
MGP_CAROLIEiJ_G0016730	-	61	96.319	ENSFDAG00000021489	HIC1	91	94.479	Fukomys_damarensis
MGP_CAROLIEiJ_G0016730	-	80	62.892	ENSGALG00000042077	HIC1	96	61.580	Gallus_gallus
MGP_CAROLIEiJ_G0016730	-	80	48.731	ENSGAFG00000012980	hic1	97	47.081	Gambusia_affinis
MGP_CAROLIEiJ_G0016730	-	67	50.912	ENSGACG00000010848	hic1	99	48.233	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0016730	-	81	59.543	ENSGAGG00000025616	HIC1	98	59.324	Gopherus_agassizii
MGP_CAROLIEiJ_G0016730	-	71	98.118	ENSGGOG00000027584	HIC1	99	98.118	Gorilla_gorilla
MGP_CAROLIEiJ_G0016730	-	80	48.250	ENSHBUG00000017815	hic1	97	46.934	Haplochromis_burtoni
MGP_CAROLIEiJ_G0016730	-	94	90.573	ENSHGLG00000012044	HIC1	98	93.481	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0016730	-	68	95.455	ENSHGLG00100013587	HIC1	97	95.455	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0016730	-	80	49.059	ENSHCOG00000001420	hic1	97	48.167	Hippocampus_comes
MGP_CAROLIEiJ_G0016730	-	80	49.938	ENSIPUG00000004604	hic1	97	49.612	Ictalurus_punctatus
MGP_CAROLIEiJ_G0016730	-	81	95.166	ENSSTOG00000011792	HIC1	98	95.166	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0016730	-	81	96.533	ENSJJAG00000017367	Hic1	98	96.533	Jaculus_jaculus
MGP_CAROLIEiJ_G0016730	-	80	49.180	ENSKMAG00000005746	hic1	97	47.428	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0016730	-	80	48.872	ENSLBEG00000021810	hic1	97	46.650	Labrus_bergylta
MGP_CAROLIEiJ_G0016730	-	80	56.275	ENSLACG00000007028	HIC1	97	55.586	Latimeria_chalumnae
MGP_CAROLIEiJ_G0016730	-	64	62.363	ENSLOCG00000006478	hic1	89	61.690	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0016730	-	81	87.569	ENSLAFG00000001259	HIC1	100	86.676	Loxodonta_africana
MGP_CAROLIEiJ_G0016730	-	81	95.146	ENSMFAG00000044684	HIC1	98	95.146	Macaca_fascicularis
MGP_CAROLIEiJ_G0016730	-	80	95.098	ENSMMUG00000048710	HIC1	100	95.098	Macaca_mulatta
MGP_CAROLIEiJ_G0016730	-	81	95.146	ENSMNEG00000013172	HIC1	98	95.146	Macaca_nemestrina
MGP_CAROLIEiJ_G0016730	-	80	49.500	ENSMAMG00000017930	hic1	97	46.985	Mastacembelus_armatus
MGP_CAROLIEiJ_G0016730	-	80	48.250	ENSMZEG00005007499	hic1	99	46.934	Maylandia_zebra
MGP_CAROLIEiJ_G0016730	-	60	71.921	ENSMGAG00000005397	HIC1	93	71.429	Meleagris_gallopavo
MGP_CAROLIEiJ_G0016730	-	81	98.058	ENSMAUG00000019881	Hic1	98	98.058	Mesocricetus_auratus
MGP_CAROLIEiJ_G0016730	-	81	94.868	ENSMICG00000012908	HIC1	98	94.868	Microcebus_murinus
MGP_CAROLIEiJ_G0016730	-	81	94.452	ENSMOCG00000001275	Hic1	98	94.452	Microtus_ochrogaster
MGP_CAROLIEiJ_G0016730	-	81	49.020	ENSMMOG00000014282	hic1	99	46.871	Mola_mola
MGP_CAROLIEiJ_G0016730	-	81	62.195	ENSMODG00000010600	HIC1	98	71.138	Monodelphis_domestica
MGP_CAROLIEiJ_G0016730	-	81	50.459	ENSMALG00000011658	hic1	99	48.473	Monopterus_albus
MGP_CAROLIEiJ_G0016730	-	100	94.396	ENSMUSG00000043099	Hic1	100	94.396	Mus_musculus
MGP_CAROLIEiJ_G0016730	-	100	94.020	MGP_SPRETEiJ_G0017573	Hic1	100	99.020	Mus_spretus
MGP_CAROLIEiJ_G0016730	-	80	94.678	ENSMPUG00000019502	HIC1	100	94.678	Mustela_putorius_furo
MGP_CAROLIEiJ_G0016730	-	72	93.878	ENSMLUG00000010527	HIC1	98	93.878	Myotis_lucifugus
MGP_CAROLIEiJ_G0016730	-	81	96.533	ENSNGAG00000020689	Hic1	98	96.533	Nannospalax_galili
MGP_CAROLIEiJ_G0016730	-	80	48.125	ENSNBRG00000020714	hic1	97	46.934	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0016730	-	56	95.400	ENSNLEG00000035047	-	81	95.400	Nomascus_leucogenys
MGP_CAROLIEiJ_G0016730	-	81	94.167	ENSODEG00000007964	HIC1	99	93.611	Octodon_degus
MGP_CAROLIEiJ_G0016730	-	80	47.870	ENSONIG00000021060	hic1	100	46.366	Oreochromis_niloticus
MGP_CAROLIEiJ_G0016730	-	80	47.453	ENSORLG00000029930	hic1	97	47.716	Oryzias_latipes
MGP_CAROLIEiJ_G0016730	-	80	47.512	ENSORLG00020008812	hic1	97	46.308	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0016730	-	80	47.637	ENSORLG00015000406	hic1	97	46.402	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0016730	-	80	47.821	ENSOMEG00000004793	hic1	97	46.212	Oryzias_melastigma
MGP_CAROLIEiJ_G0016730	-	81	94.591	ENSOGAG00000034845	HIC1	98	94.591	Otolemur_garnettii
MGP_CAROLIEiJ_G0016730	-	81	95.423	ENSPPRG00000013038	HIC1	98	95.423	Panthera_pardus
MGP_CAROLIEiJ_G0016730	-	81	95.423	ENSPTRG00000047506	HIC1	98	95.423	Pan_troglodytes
MGP_CAROLIEiJ_G0016730	-	70	87.460	ENSPANG00000024595	HIC1	95	88.468	Papio_anubis
MGP_CAROLIEiJ_G0016730	-	77	50.000	ENSPKIG00000000175	hic1	97	48.047	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0016730	-	64	62.447	ENSPKIG00000013932	hic1	73	62.069	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0016730	-	62	57.539	ENSPSIG00000007902	HIC1	99	56.696	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0016730	-	80	49.393	ENSPMGG00000011581	hic1	98	47.897	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0016730	-	81	98.336	ENSPEMG00000021229	Hic1	98	98.336	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0016730	-	81	77.926	ENSPCIG00000019061	HIC1	98	79.840	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0016730	-	80	48.492	ENSPFOG00000004471	hic1	97	46.725	Poecilia_formosa
MGP_CAROLIEiJ_G0016730	-	80	48.992	ENSPLAG00000022329	hic1	97	47.029	Poecilia_latipinna
MGP_CAROLIEiJ_G0016730	-	80	48.802	ENSPMEG00000004584	hic1	97	46.851	Poecilia_mexicana
MGP_CAROLIEiJ_G0016730	-	80	48.611	ENSPREG00000010341	hic1	97	46.776	Poecilia_reticulata
MGP_CAROLIEiJ_G0016730	-	71	97.959	ENSPPYG00000007789	HIC1	97	97.959	Pongo_abelii
MGP_CAROLIEiJ_G0016730	-	57	96.610	ENSPCAG00000000535	HIC1	70	96.610	Procavia_capensis
MGP_CAROLIEiJ_G0016730	-	81	94.591	ENSPCOG00000023965	HIC1	98	94.591	Propithecus_coquereli
MGP_CAROLIEiJ_G0016730	-	81	94.868	ENSPVAG00000002158	HIC1	98	94.868	Pteropus_vampyrus
MGP_CAROLIEiJ_G0016730	-	80	48.375	ENSPNYG00000016207	hic1	97	47.059	Pundamilia_nyererei
MGP_CAROLIEiJ_G0016730	-	81	53.567	ENSPNAG00000001133	hic1	98	51.571	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0016730	-	60	98.689	ENSRNOG00000046405	Hic1	99	98.689	Rattus_norvegicus
MGP_CAROLIEiJ_G0016730	-	81	95.330	ENSRNOG00000057619	LOC100912068	98	95.192	Rattus_norvegicus
MGP_CAROLIEiJ_G0016730	-	81	95.146	ENSRROG00000031780	HIC1	98	95.146	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0016730	-	77	49.144	ENSSFOG00015004559	hic1	94	38.983	Scleropages_formosus
MGP_CAROLIEiJ_G0016730	-	80	47.527	ENSSFOG00015005452	hic1	97	45.976	Scleropages_formosus
MGP_CAROLIEiJ_G0016730	-	80	49.250	ENSSMAG00000009823	hic1	97	47.810	Scophthalmus_maximus
MGP_CAROLIEiJ_G0016730	-	80	48.747	ENSSDUG00000012062	hic1	97	47.985	Seriola_dumerili
MGP_CAROLIEiJ_G0016730	-	80	49.000	ENSSLDG00000002022	hic1	97	47.733	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0016730	-	81	59.147	ENSSPUG00000007168	HIC1	97	57.692	Sphenodon_punctatus
MGP_CAROLIEiJ_G0016730	-	80	48.939	ENSSPAG00000021973	hic1	100	47.348	Stegastes_partitus
MGP_CAROLIEiJ_G0016730	-	81	94.044	ENSSSCG00000025717	HIC1	98	94.183	Sus_scrofa
MGP_CAROLIEiJ_G0016730	-	80	63.351	ENSTGUG00000005835	HIC1	99	62.534	Taeniopygia_guttata
MGP_CAROLIEiJ_G0016730	-	80	48.802	ENSTRUG00000024667	hic1	97	47.547	Takifugu_rubripes
MGP_CAROLIEiJ_G0016730	-	80	95.238	ENSUAMG00000025149	HIC1	100	95.238	Ursus_americanus
MGP_CAROLIEiJ_G0016730	-	80	94.818	ENSVVUG00000021725	HIC1	100	94.818	Vulpes_vulpes
MGP_CAROLIEiJ_G0016730	-	80	60.437	ENSXETG00000023803	hic1	99	58.936	Xenopus_tropicalis
MGP_CAROLIEiJ_G0016730	-	80	48.561	ENSXCOG00000009641	hic1	100	46.970	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0016730	-	80	48.000	ENSXMAG00000023343	hic1	97	47.229	Xiphophorus_maculatus