EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
MGP_CAROLIEiJ_G0017241 (Gene tree)
Gene ID
110305105
Gene Symbol
Lsm12
Alias
1110032E16Rik|2600001B17Rik
Full Name
LSM12 homolog
Gene Type
protein_coding
Species
Mus_caroli
Status
putative
Strand
Minus strand
Length
23439 bases
Position
chr11:98105539-98128977
Accession
110305105
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
MGP_CAROLIEiJ_P0030172ADPF09793.94e-2411
MGP_CAROLIEiJ_P0030171ADPF09793.92.9e-2311
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
MGP_CAROLIEiJ_T0030171-2024-MGP_CAROLIEiJ_P0030171137 (aa)--
MGP_CAROLIEiJ_T0030173-570--- (aa)--
MGP_CAROLIEiJ_T0030172-2265-MGP_CAROLIEiJ_P0030172195 (aa)XP_021032551UPI000A319E45
MGP_CAROLIEiJ_T0030175-408--- (aa)--
MGP_CAROLIEiJ_T0030174-488--- (aa)--
Gene Model
Click here to download MGP_CAROLIEiJ_G0017241's gene model file
Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0017241's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSG00000161654LSM1210099.487Homo_sapiens
MGP_CAROLIEiJ_G0017241Lsm1210085.714ENSAPOG00000007907lsm12b10085.714Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0017241Lsm1210099.083ENSAMEG00000018321LSM1210097.475Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0017241Lsm1210083.673ENSACIG00000008538lsm12b10083.673Amphilophus_citrinellus
MGP_CAROLIEiJ_G0017241Lsm1210085.204ENSAOCG00000021847lsm12b8885.204Amphiprion_ocellaris
MGP_CAROLIEiJ_G0017241Lsm1210085.204ENSAPEG00000002252lsm12b10085.204Amphiprion_percula
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSATEG00000005705lsm12b10084.694Anabas_testudineus
MGP_CAROLIEiJ_G0017241Lsm129993.264ENSACAG00000004618LSM129993.264Anolis_carolinensis
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSANAG00000029011LSM1210099.487Aotus_nancymaae
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSACLG00000026332lsm12b10084.184Astatotilapia_calliptera
MGP_CAROLIEiJ_G0017241Lsm1210081.081ENSAMXG00000036117lsm12a9178.571Astyanax_mexicanus
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSAMXG00000032952lsm12b10084.184Astyanax_mexicanus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSBTAG00000016252LSM1210099.487Bos_taurus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCJAG00000048480LSM1210099.487Callithrix_jacchus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCAFG00000014379LSM129299.487Canis_familiaris
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCAFG00020012173LSM1210099.487Canis_lupus_dingo
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCHIG00000018175LSM1210099.487Capra_hircus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSTSYG00000036361LSM1210099.487Carlito_syrichta
MGP_CAROLIEiJ_G0017241Lsm128393.827ENSCAPG00000009647LSM128993.827Cavia_aperea
MGP_CAROLIEiJ_G0017241Lsm1210097.436ENSCPOG00000012860LSM1210097.436Cavia_porcellus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCCAG00000032905LSM1210099.487Cebus_capucinus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCATG00000030577-10099.487Cercocebus_atys
MGP_CAROLIEiJ_G0017241Lsm1210098.462ENSCLAG00000015759LSM1210098.462Chinchilla_lanigera
MGP_CAROLIEiJ_G0017241Lsm1210098.974ENSCSAG00000003486LSM1210098.974Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0017241Lsm128098.165ENSCHOG00000001198LSM1210098.165Choloepus_hoffmanni
MGP_CAROLIEiJ_G0017241Lsm129993.264ENSCPBG00000027105LSM129993.264Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCANG00000043328LSM1210099.487Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSCGRG00001002094Lsm1210099.487Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0017241Lsm128099.083ENSCGRG00000004316Lsm129592.262Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSCSEG00000008434lsm12b10084.184Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0017241Lsm1210084.545ENSCVAG00000008755lsm12b10084.184Cyprinodon_variegatus
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSDARG00000109510lsm12b10084.694Danio_rerio
MGP_CAROLIEiJ_G0017241Lsm1210077.041ENSDARG00000028848lsm12a10077.041Danio_rerio
MGP_CAROLIEiJ_G0017241Lsm1210098.974ENSDNOG00000002418LSM129198.974Dasypus_novemcinctus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSDORG00000016381Lsm1210099.487Dipodomys_ordii
MGP_CAROLIEiJ_G0017241Lsm127431.646FBgn0036057CG141648331.646Drosophila_melanogaster
MGP_CAROLIEiJ_G0017241Lsm128333.133FBgn0030364Lsm127632.934Drosophila_melanogaster
MGP_CAROLIEiJ_G0017241Lsm129087.429ENSETEG00000011012-10087.429Echinops_telfairi
MGP_CAROLIEiJ_G0017241Lsm1210099.083ENSETEG00000008374LSM1210098.974Echinops_telfairi
MGP_CAROLIEiJ_G0017241Lsm128463.415ENSEBUG00000016299lsm12a9263.415Eptatretus_burgeri
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSEASG00005010155LSM1210099.487Equus_asinus_asinus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSECAG00000009071LSM1210099.487Equus_caballus
MGP_CAROLIEiJ_G0017241Lsm128195.495ENSEEUG00000002419-10098.039Erinaceus_europaeus
MGP_CAROLIEiJ_G0017241Lsm1210083.673ENSELUG00000015538lsm12b10079.082Esox_lucius
MGP_CAROLIEiJ_G0017241Lsm1210081.633ENSELUG00000000256-10081.633Esox_lucius
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSFCAG00000037021LSM1210099.487Felis_catus
MGP_CAROLIEiJ_G0017241Lsm128196.396ENSFDAG00000008954LSM128798.649Fukomys_damarensis
MGP_CAROLIEiJ_G0017241Lsm1210083.636ENSFHEG00000019913lsm12b10083.163Fundulus_heteroclitus
MGP_CAROLIEiJ_G0017241Lsm128183.784ENSGMOG00000015449lsm12b10083.544Gadus_morhua
MGP_CAROLIEiJ_G0017241Lsm128091.743ENSGALG00000039803LSM1210093.464Gallus_gallus
MGP_CAROLIEiJ_G0017241Lsm1210084.545ENSGAFG00000011829lsm12b10083.673Gambusia_affinis
MGP_CAROLIEiJ_G0017241Lsm128184.177ENSGACG00000003428lsm12b10084.177Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0017241Lsm129994.301ENSGAGG00000021965LSM129994.301Gopherus_agassizii
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSGGOG00000010589-10099.487Gorilla_gorilla
MGP_CAROLIEiJ_G0017241Lsm128585.629ENSHBUG00000007667lsm12b7485.629Haplochromis_burtoni
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSHGLG00000011411LSM1210099.487Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0017241Lsm128098.182ENSHGLG00100000241LSM129686.740Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017241Lsm1210083.673ENSHCOG00000002094lsm12b10083.673Hippocampus_comes
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSIPUG00000014800lsm1210084.694Ictalurus_punctatus
MGP_CAROLIEiJ_G0017241Lsm129976.852ENSIPUG00000008936lsm12a9975.258Ictalurus_punctatus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSSTOG00000007403LSM1210099.487Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0017241Lsm128184.906ENSJJAG00000014652-9584.906Jaculus_jaculus
MGP_CAROLIEiJ_G0017241Lsm129787.368ENSJJAG00000011793-10087.368Jaculus_jaculus
MGP_CAROLIEiJ_G0017241Lsm1210098.540ENSJJAG00000004364-10098.540Jaculus_jaculus
MGP_CAROLIEiJ_G0017241Lsm128686.310ENSKMAG00000007704lsm12b5786.310Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0017241Lsm1210085.204ENSLBEG00000027999lsm12b10085.204Labrus_bergylta
MGP_CAROLIEiJ_G0017241Lsm129990.000ENSLACG00000015981LSM129989.637Latimeria_chalumnae
MGP_CAROLIEiJ_G0017241Lsm1210085.586ENSLOCG00000013079lsm12b9983.163Lepisosteus_oculatus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSLAFG00000005202LSM1210099.487Loxodonta_africana
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSMFAG00000031376LSM1210099.487Macaca_fascicularis
MGP_CAROLIEiJ_G0017241Lsm1210066.423ENSMMUG00000038408-10085.057Macaca_mulatta
MGP_CAROLIEiJ_G0017241Lsm1210067.153ENSMMUG00000042106-10085.057Macaca_mulatta
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSMMUG00000006804LSM1210099.487Macaca_mulatta
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSMNEG00000030594-10099.487Macaca_nemestrina
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSMLEG00000039934LSM1210099.487Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSMAMG00000004279lsm12b10084.694Mastacembelus_armatus
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSMZEG00005005754lsm12b10084.184Maylandia_zebra
MGP_CAROLIEiJ_G0017241Lsm1210098.974ENSMICG00000037219LSM1210098.974Microcebus_murinus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSMOCG00000019878-10099.487Microtus_ochrogaster
MGP_CAROLIEiJ_G0017241Lsm1210084.103ENSMOCG00000017015-8684.103Microtus_ochrogaster
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSMMOG00000020848lsm12b10084.694Mola_mola
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSMALG00000007578lsm12b10084.694Monopterus_albus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSMUSG00000020922Lsm1210099.487Mus_musculus
MGP_CAROLIEiJ_G0017241Lsm1210099.270MGP_PahariEiJ_G0018371Lsm1210099.270Mus_pahari
MGP_CAROLIEiJ_G0017241Lsm1210098.974MGP_SPRETEiJ_G0018084Lsm1299100.000Mus_spretus
MGP_CAROLIEiJ_G0017241Lsm1210098.974ENSMLUG00000006391LSM1210098.974Myotis_lucifugus
MGP_CAROLIEiJ_G0017241Lsm1210066.832ENSNGAG00000015429-10066.832Nannospalax_galili
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSNGAG00000001870Lsm1210099.487Nannospalax_galili
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSNBRG00000006266lsm12b10084.184Neolamprologus_brichardi
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSNLEG00000005580-10099.487Nomascus_leucogenys
MGP_CAROLIEiJ_G0017241Lsm128598.182ENSMEUG00000007501-10098.182Notamacropus_eugenii
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSOPRG00000008552LSM1210099.487Ochotona_princeps
MGP_CAROLIEiJ_G0017241Lsm1210088.205ENSODEG00000007886-7488.205Octodon_degus
MGP_CAROLIEiJ_G0017241Lsm1210097.949ENSODEG00000017998-10097.949Octodon_degus
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSONIG00000007933lsm12b10084.184Oreochromis_niloticus
MGP_CAROLIEiJ_G0017241Lsm125495.946ENSOANG00000031724-10090.123Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0017241Lsm129992.661ENSOCUG00000024823-10092.268Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017241Lsm129993.636ENSOCUG00000027889-10093.299Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017241Lsm1210099.083ENSOCUG00000008566-10097.475Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017241Lsm129993.299ENSOCUG00000021254-10093.299Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSORLG00000011310lsm12b10084.694Oryzias_latipes
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSORLG00020002060lsm12b9284.694Oryzias_latipes_hni
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSORLG00015001647lsm12b9284.694Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSOMEG00000006184lsm12b9284.694Oryzias_melastigma
MGP_CAROLIEiJ_G0017241Lsm1210098.974ENSOGAG00000010489LSM1210098.974Otolemur_garnettii
MGP_CAROLIEiJ_G0017241Lsm1210099.083ENSOARG00000006589LSM1210096.020Ovis_aries
MGP_CAROLIEiJ_G0017241Lsm1210091.549ENSPPAG00000034974-92100.000Pan_paniscus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSPPRG00000023420LSM1210099.487Panthera_pardus
MGP_CAROLIEiJ_G0017241Lsm128197.297ENSPTIG00000012704-8299.346Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017241Lsm1210097.810ENSPTIG00000014850-10097.810Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSPTRG00000009261LSM1210099.487Pan_troglodytes
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSPANG00000021315-10099.487Papio_anubis
MGP_CAROLIEiJ_G0017241Lsm1210085.714ENSPKIG00000021058lsm12b10085.714Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0017241Lsm129976.804ENSPKIG00000017932-9976.804Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSPMGG00000021344lsm12b10084.184Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSPEMG00000012199Lsm1210099.487Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0017241Lsm128866.279ENSPMAG00000005461lsm12a9966.279Petromyzon_marinus
MGP_CAROLIEiJ_G0017241Lsm1210096.410ENSPCIG00000020244LSM1210096.410Phascolarctos_cinereus
MGP_CAROLIEiJ_G0017241Lsm1210083.784ENSPFOG00000015930lsm12b10082.653Poecilia_formosa
MGP_CAROLIEiJ_G0017241Lsm1210083.784ENSPLAG00000021089lsm12b10082.653Poecilia_latipinna
MGP_CAROLIEiJ_G0017241Lsm1210083.784ENSPMEG00000012961lsm12b10082.653Poecilia_mexicana
MGP_CAROLIEiJ_G0017241Lsm128884.795ENSPREG00000010236lsm12b9584.795Poecilia_reticulata
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSPPYG00000008344LSM1210099.487Pongo_abelii
MGP_CAROLIEiJ_G0017241Lsm128299.371ENSPCAG00000008790LSM1210099.371Procavia_capensis
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSPCOG00000027951LSM1210099.487Propithecus_coquereli
MGP_CAROLIEiJ_G0017241Lsm1210098.974ENSPVAG00000013706LSM1210098.974Pteropus_vampyrus
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSPNYG00000003386lsm12b10084.184Pundamilia_nyererei
MGP_CAROLIEiJ_G0017241Lsm1210081.081ENSPNAG00000018435lsm12a10076.531Pygocentrus_nattereri
MGP_CAROLIEiJ_G0017241Lsm1210083.636ENSPNAG00000004186lsm12b10082.653Pygocentrus_nattereri
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSRNOG00000020894Lsm1210099.487Rattus_norvegicus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSRBIG00000027910LSM1210099.487Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSRROG00000045530-10099.487Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017241Lsm1210082.482ENSRROG00000000537-10082.482Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017241Lsm127733.051YHR121W-6133.051Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSSBOG00000025310LSM1210099.487Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0017241Lsm128193.694ENSSHAG00000014914LSM1210093.671Sarcophilus_harrisii
MGP_CAROLIEiJ_G0017241Lsm1210083.163ENSSFOG00015020392lsm12a10083.163Scleropages_formosus
MGP_CAROLIEiJ_G0017241Lsm1210085.714ENSSFOG00015009612lsm1210085.714Scleropages_formosus
MGP_CAROLIEiJ_G0017241Lsm1210084.694ENSSMAG00000008089lsm12b10084.694Scophthalmus_maximus
MGP_CAROLIEiJ_G0017241Lsm1210085.714ENSSDUG00000012711lsm12b10085.714Seriola_dumerili
MGP_CAROLIEiJ_G0017241Lsm1210085.714ENSSLDG00000007404lsm12b10085.714Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0017241Lsm128197.297ENSSARG00000005537LSM1210098.693Sorex_araneus
MGP_CAROLIEiJ_G0017241Lsm129994.301ENSSPUG00000011984LSM129994.301Sphenodon_punctatus
MGP_CAROLIEiJ_G0017241Lsm1210085.204ENSSPAG00000017058lsm12b10085.204Stegastes_partitus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSSSCG00000032394LSM1210099.487Sus_scrofa
MGP_CAROLIEiJ_G0017241Lsm1210083.673ENSTRUG00000007121lsm12b10083.673Takifugu_rubripes
MGP_CAROLIEiJ_G0017241Lsm1210084.184ENSTNIG00000014436lsm12b10084.184Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0017241Lsm1210095.897ENSTBEG00000012392-10095.897Tupaia_belangeri
MGP_CAROLIEiJ_G0017241Lsm1210098.974ENSTBEG00000012523-10098.974Tupaia_belangeri
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSTTRG00000010433LSM1210099.487Tursiops_truncatus
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSUAMG00000006313LSM1210099.487Ursus_americanus
MGP_CAROLIEiJ_G0017241Lsm128197.297ENSUMAG00000012987LSM129096.203Ursus_maritimus
MGP_CAROLIEiJ_G0017241Lsm1210093.846ENSVPAG00000011145LSM1210093.846Vicugna_pacos
MGP_CAROLIEiJ_G0017241Lsm1210099.487ENSVVUG00000017581LSM1210099.487Vulpes_vulpes
MGP_CAROLIEiJ_G0017241Lsm128082.569ENSXETG00000003371lsm127764.375Xenopus_tropicalis
MGP_CAROLIEiJ_G0017241Lsm1210084.545ENSXCOG00000003994lsm12b10083.673Xiphophorus_couchianus
MGP_CAROLIEiJ_G0017241Lsm1210084.545ENSXMAG00000020950lsm12b10083.673Xiphophorus_maculatus

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