EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0017314 (Gene tree)
Gene ID: 110305766
Gene Symbol: Ddx42
Alias: 1810047H21Rik|B430002H05Rik|SF3b125
Full Name: DEAD-box helicase 42
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 31431 bases
Position: chr11:102122404-102153834
Accession: 110305766
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0030536	ResIII	PF04851.15	1.1e-06	1	1
MGP_CAROLIEiJ_P0030536	DEAD	PF00270.29	1e-49	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0030537	-	441	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0030536	-	3978	XM_021177866	MGP_CAROLIEiJ_P0030536	929 (aa)	XP_021033525	UPI000A3191E9

Gene Model

Click here to download MGP_CAROLIEiJ_G0017314's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0017314's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0017314	Ddx42	50	36.066	MGP_CAROLIEiJ_G0032467	Ddx43	74	36.066
MGP_CAROLIEiJ_G0017314	Ddx42	51	32.075	MGP_CAROLIEiJ_G0014656	Ddx59	74	32.075

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.314	ENSG00000198231	DDX42	100	98.077	Homo_sapiens
MGP_CAROLIEiJ_G0017314	Ddx42	91	76.561	ENSAPOG00000017675	ddx42	97	73.743	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.085	ENSAMEG00000003200	DDX42	100	95.085	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0017314	Ddx42	74	76.681	ENSACIG00000007376	ddx42	99	72.131	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0017314	Ddx42	91	76.706	ENSAOCG00000003520	ddx42	99	72.076	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0017314	Ddx42	91	76.887	ENSAPEG00000000984	ddx42	99	72.029	Amphiprion_percula
MGP_CAROLIEiJ_G0017314	Ddx42	99	71.975	ENSATEG00000022920	ddx42	99	72.264	Anabas_testudineus
MGP_CAROLIEiJ_G0017314	Ddx42	100	83.421	ENSAPLG00000010544	DDX42	100	84.534	Anas_platyrhynchos
MGP_CAROLIEiJ_G0017314	Ddx42	100	84.149	ENSACAG00000003994	DDX42	99	84.681	Anolis_carolinensis
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.237	ENSANAG00000035693	DDX42	99	97.443	Aotus_nancymaae
MGP_CAROLIEiJ_G0017314	Ddx42	89	77.300	ENSACLG00000025113	ddx42	99	72.098	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0017314	Ddx42	81	79.815	ENSAMXG00000011435	ddx42	99	69.938	Astyanax_mexicanus
MGP_CAROLIEiJ_G0017314	Ddx42	100	94.338	ENSBTAG00000021058	DDX42	100	94.444	Bos_taurus
MGP_CAROLIEiJ_G0017314	Ddx42	64	52.830	WBGene00008119	C46F11.4	78	53.052	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.129	ENSCJAG00000019649	DDX42	99	98.303	Callithrix_jacchus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.080	ENSCAFG00000012818	DDX42	100	95.080	Canis_familiaris
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.187	ENSCAFG00020026631	DDX42	100	95.187	Canis_lupus_dingo
MGP_CAROLIEiJ_G0017314	Ddx42	100	94.462	ENSCHIG00000014431	DDX42	100	94.462	Capra_hircus
MGP_CAROLIEiJ_G0017314	Ddx42	100	93.910	ENSTSYG00000001380	DDX42	100	93.910	Carlito_syrichta
MGP_CAROLIEiJ_G0017314	Ddx42	73	75.628	ENSCAPG00000013621	DDX42	94	75.628	Cavia_aperea
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.704	ENSCPOG00000005633	DDX42	100	95.704	Cavia_porcellus
MGP_CAROLIEiJ_G0017314	Ddx42	100	90.753	ENSCCAG00000020612	DDX42	100	95.068	Cebus_capucinus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.914	ENSCATG00000030490	DDX42	100	95.806	Cercocebus_atys
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.348	ENSCLAG00000003497	DDX42	100	95.918	Chinchilla_lanigera
MGP_CAROLIEiJ_G0017314	Ddx42	100	91.314	ENSCSAG00000003914	DDX42	100	91.314	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0017314	Ddx42	79	94.643	ENSCHOG00000006241	DDX42	79	94.643	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0017314	Ddx42	100	83.820	ENSCPBG00000026682	DDX42	100	83.801	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.914	ENSCANG00000034663	DDX42	99	97.554	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0017314	Ddx42	100	97.632	ENSCGRG00001009775	Ddx42	100	97.632	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0017314	Ddx42	100	97.632	ENSCGRG00000011718	Ddx42	100	97.632	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0017314	Ddx42	91	74.616	ENSCSEG00000021574	ddx42	99	70.224	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0017314	Ddx42	99	70.117	ENSCVAG00000011404	ddx42	99	71.505	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0017314	Ddx42	99	69.358	ENSDARG00000037928	ddx42	99	70.742	Danio_rerio
MGP_CAROLIEiJ_G0017314	Ddx42	100	89.019	ENSDNOG00000007961	DDX42	100	89.019	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0017314	Ddx42	100	87.901	ENSDORG00000004199	Ddx42	100	87.366	Dipodomys_ordii
MGP_CAROLIEiJ_G0017314	Ddx42	66	60.514	FBgn0036104	CG6418	88	55.540	Drosophila_melanogaster
MGP_CAROLIEiJ_G0017314	Ddx42	80	73.475	ENSEBUG00000001155	ddx42	91	73.475	Eptatretus_burgeri
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.150	ENSEASG00005013089	DDX42	99	97.429	Equus_asinus_asinus
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.257	ENSECAG00000022684	DDX42	100	96.257	Equus_caballus
MGP_CAROLIEiJ_G0017314	Ddx42	67	97.297	ENSEEUG00000009144	DDX42	85	97.297	Erinaceus_europaeus
MGP_CAROLIEiJ_G0017314	Ddx42	99	70.231	ENSELUG00000020593	ddx42	99	71.005	Esox_lucius
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.150	ENSFCAG00000003499	DDX42	100	96.150	Felis_catus
MGP_CAROLIEiJ_G0017314	Ddx42	96	84.581	ENSFALG00000004675	DDX42	78	84.305	Ficedula_albicollis
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.923	ENSFDAG00000020516	DDX42	100	95.923	Fukomys_damarensis
MGP_CAROLIEiJ_G0017314	Ddx42	99	69.723	ENSFHEG00000023290	ddx42	99	71.109	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0017314	Ddx42	76	78.138	ENSGMOG00000004595	ddx42	79	78.138	Gadus_morhua
MGP_CAROLIEiJ_G0017314	Ddx42	100	82.128	ENSGALG00000000581	DDX42	100	82.335	Gallus_gallus
MGP_CAROLIEiJ_G0017314	Ddx42	90	75.059	ENSGAFG00000011846	ddx42	96	73.333	Gambusia_affinis
MGP_CAROLIEiJ_G0017314	Ddx42	99	68.737	ENSGACG00000009782	ddx42	99	67.444	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0017314	Ddx42	100	84.100	ENSGAGG00000024411	DDX42	99	83.455	Gopherus_agassizii
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.914	ENSGGOG00000006779	DDX42	100	95.806	Gorilla_gorilla
MGP_CAROLIEiJ_G0017314	Ddx42	89	77.419	ENSHBUG00000008705	ddx42	99	72.311	Haplochromis_burtoni
MGP_CAROLIEiJ_G0017314	Ddx42	100	91.613	ENSHGLG00000010024	DDX42	100	91.398	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.294	ENSHGLG00100004479	-	100	95.294	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017314	Ddx42	94	73.020	ENSHGLG00100007138	-	95	72.675	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017314	Ddx42	84	77.863	ENSHCOG00000003357	ddx42	92	77.863	Hippocampus_comes
MGP_CAROLIEiJ_G0017314	Ddx42	80	79.789	ENSIPUG00000013327	ddx42	100	69.506	Ictalurus_punctatus
MGP_CAROLIEiJ_G0017314	Ddx42	100	97.103	ENSSTOG00000008922	DDX42	100	97.103	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.811	ENSJJAG00000011727	Ddx42	100	95.811	Jaculus_jaculus
MGP_CAROLIEiJ_G0017314	Ddx42	84	79.695	ENSKMAG00000009914	ddx42	99	72.553	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0017314	Ddx42	81	76.364	ENSLBEG00000004687	ddx42	99	66.914	Labrus_bergylta
MGP_CAROLIEiJ_G0017314	Ddx42	99	76.319	ENSLACG00000013476	DDX42	97	77.503	Latimeria_chalumnae
MGP_CAROLIEiJ_G0017314	Ddx42	100	74.866	ENSLOCG00000011764	ddx42	99	75.269	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.376	ENSLAFG00000003249	DDX42	100	95.187	Loxodonta_africana
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.914	ENSMFAG00000031356	DDX42	100	95.806	Macaca_fascicularis
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.717	ENSMMUG00000016762	DDX42	100	95.610	Macaca_mulatta
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.914	ENSMNEG00000038250	DDX42	100	95.806	Macaca_nemestrina
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.101	ENSMLEG00000043080	DDX42	100	95.101	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0017314	Ddx42	91	77.358	ENSMAMG00000021888	ddx42	98	71.921	Mastacembelus_armatus
MGP_CAROLIEiJ_G0017314	Ddx42	89	77.300	ENSMZEG00005023103	ddx42	99	72.098	Maylandia_zebra
MGP_CAROLIEiJ_G0017314	Ddx42	100	82.645	ENSMGAG00000001822	DDX42	100	82.645	Meleagris_gallopavo
MGP_CAROLIEiJ_G0017314	Ddx42	76	98.580	ENSMAUG00000020774	-	94	98.580	Mesocricetus_auratus
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.237	ENSMICG00000009952	DDX42	100	96.237	Microcebus_murinus
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.771	ENSMOCG00000015504	Ddx42	100	96.771	Microtus_ochrogaster
MGP_CAROLIEiJ_G0017314	Ddx42	89	72.455	ENSMMOG00000016963	ddx42	87	69.932	Mola_mola
MGP_CAROLIEiJ_G0017314	Ddx42	50	97.645	ENSMODG00000009917	-	98	97.645	Monodelphis_domestica
MGP_CAROLIEiJ_G0017314	Ddx42	99	72.193	ENSMALG00000007800	ddx42	99	73.019	Monopterus_albus
MGP_CAROLIEiJ_G0017314	Ddx42	100	99.677	ENSMUSG00000020705	Ddx42	100	99.677	Mus_musculus
MGP_CAROLIEiJ_G0017314	Ddx42	79	100.000	MGP_PahariEiJ_G0018444	-	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0017314	Ddx42	100	99.677	MGP_SPRETEiJ_G0018158	Ddx42	100	99.677	Mus_spretus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.324	ENSMPUG00000014921	DDX42	100	95.324	Mustela_putorius_furo
MGP_CAROLIEiJ_G0017314	Ddx42	100	92.835	ENSMLUG00000011645	DDX42	100	93.256	Myotis_lucifugus
MGP_CAROLIEiJ_G0017314	Ddx42	100	97.315	ENSNGAG00000021897	Ddx42	100	97.315	Nannospalax_galili
MGP_CAROLIEiJ_G0017314	Ddx42	89	75.866	ENSNBRG00000004466	ddx42	99	70.927	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.806	ENSNLEG00000004248	DDX42	99	97.557	Nomascus_leucogenys
MGP_CAROLIEiJ_G0017314	Ddx42	74	82.616	ENSMEUG00000013227	-	84	82.616	Notamacropus_eugenii
MGP_CAROLIEiJ_G0017314	Ddx42	100	94.350	ENSOPRG00000014960	DDX42	100	94.456	Ochotona_princeps
MGP_CAROLIEiJ_G0017314	Ddx42	100	92.696	ENSODEG00000007810	DDX42	100	92.266	Octodon_degus
MGP_CAROLIEiJ_G0017314	Ddx42	89	77.300	ENSONIG00000000734	ddx42	99	72.098	Oreochromis_niloticus
MGP_CAROLIEiJ_G0017314	Ddx42	58	92.393	ENSOANG00000000265	DDX42	100	92.393	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0017314	Ddx42	95	95.501	ENSOCUG00000004304	DDX42	88	95.388	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017314	Ddx42	100	70.626	ENSORLG00000002395	ddx42	100	69.468	Oryzias_latipes
MGP_CAROLIEiJ_G0017314	Ddx42	100	70.957	ENSORLG00020011621	ddx42	100	71.975	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0017314	Ddx42	100	70.701	ENSORLG00015004487	ddx42	100	71.762	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0017314	Ddx42	80	82.290	ENSOMEG00000020093	ddx42	100	71.005	Oryzias_melastigma
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.096	ENSOGAG00000006872	DDX42	100	95.096	Otolemur_garnettii
MGP_CAROLIEiJ_G0017314	Ddx42	100	93.565	ENSOARG00000013540	DDX42	100	93.776	Ovis_aries
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.129	ENSPPAG00000007496	DDX42	100	96.022	Pan_paniscus
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.043	ENSPPRG00000002740	DDX42	100	96.043	Panthera_pardus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.722	ENSPTIG00000009932	DDX42	100	95.722	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.129	ENSPTRG00000009523	DDX42	100	96.022	Pan_troglodytes
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.806	ENSPANG00000020990	DDX42	100	95.699	Papio_anubis
MGP_CAROLIEiJ_G0017314	Ddx42	100	70.362	ENSPKIG00000002901	ddx42	99	70.170	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0017314	Ddx42	86	91.677	ENSPSIG00000010289	DDX42	98	91.379	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0017314	Ddx42	100	67.375	ENSPMGG00000009323	ddx42	100	68.110	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0017314	Ddx42	100	97.742	ENSPEMG00000006755	Ddx42	100	97.742	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0017314	Ddx42	80	72.346	ENSPMAG00000005580	ddx42	100	73.001	Petromyzon_marinus
MGP_CAROLIEiJ_G0017314	Ddx42	100	90.572	ENSPCIG00000009093	DDX42	100	90.360	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0017314	Ddx42	99	69.896	ENSPFOG00000014104	ddx42	99	72.181	Poecilia_formosa
MGP_CAROLIEiJ_G0017314	Ddx42	99	69.896	ENSPLAG00000010522	ddx42	99	72.181	Poecilia_latipinna
MGP_CAROLIEiJ_G0017314	Ddx42	99	70.115	ENSPMEG00000010744	ddx42	99	71.773	Poecilia_mexicana
MGP_CAROLIEiJ_G0017314	Ddx42	99	69.534	ENSPREG00000009926	ddx42	99	70.613	Poecilia_reticulata
MGP_CAROLIEiJ_G0017314	Ddx42	100	93.001	ENSPPYG00000008531	DDX42	100	93.001	Pongo_abelii
MGP_CAROLIEiJ_G0017314	Ddx42	92	89.199	ENSPCAG00000002474	DDX42	100	89.199	Procavia_capensis
MGP_CAROLIEiJ_G0017314	Ddx42	100	85.882	ENSPCOG00000001559	DDX42	98	89.249	Propithecus_coquereli
MGP_CAROLIEiJ_G0017314	Ddx42	100	91.560	ENSPVAG00000000160	DDX42	100	91.560	Pteropus_vampyrus
MGP_CAROLIEiJ_G0017314	Ddx42	74	75.216	ENSPNYG00000013954	ddx42	97	69.472	Pundamilia_nyererei
MGP_CAROLIEiJ_G0017314	Ddx42	78	81.063	ENSPNAG00000017352	ddx42	99	69.691	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0017314	Ddx42	100	98.924	ENSRNOG00000009474	Ddx42	100	98.924	Rattus_norvegicus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.806	ENSRBIG00000004781	DDX42	99	97.554	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.914	ENSRROG00000029794	DDX42	100	95.806	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017314	Ddx42	100	96.237	ENSSBOG00000029624	DDX42	100	96.237	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0017314	Ddx42	100	90.890	ENSSHAG00000012896	-	100	90.678	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0017314	Ddx42	71	60.119	ENSSHAG00000007919	-	99	59.259	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0017314	Ddx42	83	79.974	ENSSFOG00015014064	ddx42	83	80.103	Scleropages_formosus
MGP_CAROLIEiJ_G0017314	Ddx42	99	71.337	ENSSMAG00000009077	ddx42	99	72.316	Scophthalmus_maximus
MGP_CAROLIEiJ_G0017314	Ddx42	99	72.021	ENSSDUG00000022221	ddx42	99	72.293	Seriola_dumerili
MGP_CAROLIEiJ_G0017314	Ddx42	99	71.674	ENSSLDG00000018483	ddx42	99	71.627	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0017314	Ddx42	100	94.545	ENSSARG00000009847	DDX42	100	94.545	Sorex_araneus
MGP_CAROLIEiJ_G0017314	Ddx42	100	83.817	ENSSPUG00000018806	DDX42	100	83.368	Sphenodon_punctatus
MGP_CAROLIEiJ_G0017314	Ddx42	91	76.678	ENSSPAG00000013055	ddx42	99	72.187	Stegastes_partitus
MGP_CAROLIEiJ_G0017314	Ddx42	85	93.176	ENSSSCG00000017289	DDX42	97	93.548	Sus_scrofa
MGP_CAROLIEiJ_G0017314	Ddx42	100	83.421	ENSTGUG00000001931	DDX42	100	83.421	Taeniopygia_guttata
MGP_CAROLIEiJ_G0017314	Ddx42	99	70.204	ENSTRUG00000010711	ddx42	99	79.431	Takifugu_rubripes
MGP_CAROLIEiJ_G0017314	Ddx42	82	93.289	ENSTBEG00000010159	DDX42	99	93.289	Tupaia_belangeri
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.085	ENSTTRG00000006962	DDX42	100	94.658	Tursiops_truncatus
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.192	ENSUAMG00000007321	DDX42	100	95.192	Ursus_americanus
MGP_CAROLIEiJ_G0017314	Ddx42	100	94.338	ENSUMAG00000017438	DDX42	100	94.338	Ursus_maritimus
MGP_CAROLIEiJ_G0017314	Ddx42	100	86.096	ENSVPAG00000009633	DDX42	100	86.096	Vicugna_pacos
MGP_CAROLIEiJ_G0017314	Ddx42	100	95.401	ENSVVUG00000006095	DDX42	100	95.401	Vulpes_vulpes
MGP_CAROLIEiJ_G0017314	Ddx42	100	77.239	ENSXETG00000003245	ddx42	100	75.259	Xenopus_tropicalis
MGP_CAROLIEiJ_G0017314	Ddx42	84	70.849	ENSXCOG00000017560	ddx42	97	71.483	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0017314	Ddx42	99	71.520	ENSXMAG00000008138	ddx42	99	72.270	Xiphophorus_maculatus