EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0017369 (Gene tree)
Gene ID: 110305665
Gene Symbol: -
Alias: -
Full Name: cleavage and polyadenylation specific factor 4 like
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Minus strand
Length: 12399 bases
Position: chr11:109542640-109555038
Accession: 110305665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0030779	zf-CCCH	PF00642.24	2.4e-10	1	1
MGP_CAROLIEiJ_P0030777	zf-CCCH	PF00642.24	8.9e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0030779	-	1120	-	MGP_CAROLIEiJ_P0030779	153 (aa)	-	-
MGP_CAROLIEiJ_T0030778	-	1374	-	MGP_CAROLIEiJ_P0030778	279 (aa)	-	-
MGP_CAROLIEiJ_T0030777	-	1213	XM_021177726	MGP_CAROLIEiJ_P0030777	228 (aa)	XP_021033385	UPI000A318F35
MGP_CAROLIEiJ_T0030776	-	1235	XM_021177727	MGP_CAROLIEiJ_P0030776	190 (aa)	XP_021033386	UPI000A31A22E
MGP_CAROLIEiJ_T0030780	-	996	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0017369's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0017369's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0017369	-	82	61.600	MGP_CAROLIEiJ_G0028012	Cpsf4	86	52.830

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0017369	-	73	74.850	ENSG00000187959	CPSF4L	93	74.850	Homo_sapiens
MGP_CAROLIEiJ_G0017369	-	88	65.842	ENSAMEG00000002707	CPSF4L	74	65.842	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0017369	-	74	47.788	ENSANAG00000026558	-	85	44.531	Aotus_nancymaae
MGP_CAROLIEiJ_G0017369	-	73	58.929	ENSCJAG00000019911	CPSF4L	91	56.024	Callithrix_jacchus
MGP_CAROLIEiJ_G0017369	-	73	74.251	ENSCATG00000044555	CPSF4L	93	74.251	Cercocebus_atys
MGP_CAROLIEiJ_G0017369	-	73	74.251	ENSCSAG00000004429	CPSF4L	93	74.251	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0017369	-	72	75.152	ENSCANG00000035042	CPSF4L	92	75.152	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0017369	-	83	82.677	ENSCGRG00001020079	Cpsf4l	100	84.444	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0017369	-	83	82.677	ENSCGRG00000010419	Cpsf4l	100	84.444	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0017369	-	74	73.810	ENSDNOG00000014458	CPSF4L	88	73.810	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0017369	-	73	74.251	ENSEASG00005018763	CPSF4L	100	74.251	Equus_asinus_asinus
MGP_CAROLIEiJ_G0017369	-	73	74.251	ENSECAG00000024813	CPSF4L	100	74.251	Equus_caballus
MGP_CAROLIEiJ_G0017369	-	84	71.204	ENSFCAG00000004745	CPSF4L	71	73.333	Felis_catus
MGP_CAROLIEiJ_G0017369	-	73	74.850	ENSGGOG00000026659	CPSF4L	93	74.850	Gorilla_gorilla
MGP_CAROLIEiJ_G0017369	-	72	76.970	ENSSTOG00000001849	CPSF4L	94	76.970	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0017369	-	76	73.988	ENSLAFG00000010697	CPSF4L	98	73.988	Loxodonta_africana
MGP_CAROLIEiJ_G0017369	-	73	74.251	ENSMFAG00000037840	CPSF4L	93	74.251	Macaca_fascicularis
MGP_CAROLIEiJ_G0017369	-	73	74.251	ENSMMUG00000001271	CPSF4L	93	74.251	Macaca_mulatta
MGP_CAROLIEiJ_G0017369	-	73	74.251	ENSMNEG00000045419	CPSF4L	93	74.251	Macaca_nemestrina
MGP_CAROLIEiJ_G0017369	-	72	75.152	ENSMLEG00000038527	CPSF4L	92	75.152	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0017369	-	73	84.940	ENSMAUG00000019519	-	99	84.940	Mesocricetus_auratus
MGP_CAROLIEiJ_G0017369	-	72	75.152	ENSMICG00000007503	CPSF4L	94	75.152	Microcebus_murinus
MGP_CAROLIEiJ_G0017369	-	59	85.821	ENSMOCG00000015313	-	92	85.821	Microtus_ochrogaster
MGP_CAROLIEiJ_G0017369	-	73	71.429	ENSMODG00000025672	CPSF4L	99	68.944	Monodelphis_domestica
MGP_CAROLIEiJ_G0017369	-	100	96.078	ENSMUSG00000018727	Cpsf4l	100	96.078	Mus_musculus
MGP_CAROLIEiJ_G0017369	-	82	92.857	MGP_PahariEiJ_G0018499	-	90	87.591	Mus_pahari
MGP_CAROLIEiJ_G0017369	-	100	95.425	MGP_SPRETEiJ_G0018215	-	100	95.425	Mus_spretus
MGP_CAROLIEiJ_G0017369	-	77	69.492	ENSMPUG00000014276	CPSF4L	100	72.455	Mustela_putorius_furo
MGP_CAROLIEiJ_G0017369	-	73	71.856	ENSMLUG00000009617	CPSF4L	93	71.856	Myotis_lucifugus
MGP_CAROLIEiJ_G0017369	-	73	83.036	ENSNGAG00000009325	-	96	83.636	Nannospalax_galili
MGP_CAROLIEiJ_G0017369	-	73	74.850	ENSNLEG00000001420	CPSF4L	93	74.850	Nomascus_leucogenys
MGP_CAROLIEiJ_G0017369	-	66	70.297	ENSMEUG00000004051	-	99	70.297	Notamacropus_eugenii
MGP_CAROLIEiJ_G0017369	-	71	65.138	ENSOPRG00000007484	-	80	65.138	Ochotona_princeps
MGP_CAROLIEiJ_G0017369	-	78	68.927	ENSOCUG00000026495	CPSF4L	79	68.927	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017369	-	75	71.053	ENSPPAG00000037000	-	91	72.593	Pan_paniscus
MGP_CAROLIEiJ_G0017369	-	67	70.874	ENSPPRG00000001058	CPSF4L	76	62.000	Panthera_pardus
MGP_CAROLIEiJ_G0017369	-	67	70.874	ENSPTIG00000012676	CPSF4L	82	77.612	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017369	-	73	74.850	ENSPTRG00000009598	CPSF4L	93	74.850	Pan_troglodytes
MGP_CAROLIEiJ_G0017369	-	72	75.152	ENSPANG00000020331	CPSF4L	92	75.152	Papio_anubis
MGP_CAROLIEiJ_G0017369	-	100	79.739	ENSPEMG00000011680	Cpsf4l	100	79.739	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0017369	-	75	69.298	ENSPCIG00000001889	CPSF4L	98	67.665	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0017369	-	70	70.093	ENSPPYG00000008589	-	70	70.093	Pongo_abelii
MGP_CAROLIEiJ_G0017369	-	71	74.691	ENSPCOG00000021801	CPSF4L	91	74.691	Propithecus_coquereli
MGP_CAROLIEiJ_G0017369	-	67	68.932	ENSPVAG00000006736	CPSF4L	69	68.932	Pteropus_vampyrus
MGP_CAROLIEiJ_G0017369	-	75	71.930	ENSRBIG00000029048	CPSF4L	99	71.930	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017369	-	73	72.455	ENSRROG00000037051	CPSF4L	93	72.455	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017369	-	56	70.588	ENSTBEG00000012716	-	94	70.588	Tupaia_belangeri
MGP_CAROLIEiJ_G0017369	-	70	71.028	ENSTTRG00000005243	CPSF4L	71	71.028	Tursiops_truncatus
MGP_CAROLIEiJ_G0017369	-	59	78.358	ENSUAMG00000007728	CPSF4L	85	78.358	Ursus_americanus
MGP_CAROLIEiJ_G0017369	-	59	78.358	ENSUMAG00000007869	CPSF4L	85	78.358	Ursus_maritimus