EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0017417 (Gene tree)
Gene ID: 110305145
Gene Symbol: Tsen54
Alias: 0610034P02Rik
Full Name: tRNA splicing endonuclease subunit 54
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 8298 bases
Position: chr11:111662692-111670989
Accession: 110305145
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0031002	tRNA_int_end_N2	PF12928.7	9.5e-19	1	1
MGP_CAROLIEiJ_P0031003	tRNA_int_end_N2	PF12928.7	1.1e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0031008	-	965	-	MGP_CAROLIEiJ_P0031008	153 (aa)	-	-
MGP_CAROLIEiJ_T0031009	-	496	-	MGP_CAROLIEiJ_P0031009	164 (aa)	-	-
MGP_CAROLIEiJ_T0031002	-	1864	-	MGP_CAROLIEiJ_P0031002	486 (aa)	-	-
MGP_CAROLIEiJ_T0031003	-	1981	XM_021176948	MGP_CAROLIEiJ_P0031003	525 (aa)	XP_021032607	UPI000A315A8B
MGP_CAROLIEiJ_T0031006	-	813	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0031007	-	825	-	MGP_CAROLIEiJ_P0031007	275 (aa)	-	-
MGP_CAROLIEiJ_T0031004	-	522	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0031005	-	858	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0017417's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0017417's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.848	ENSG00000182173	TSEN54	99	88.732	Homo_sapiens
MGP_CAROLIEiJ_G0017417	Tsen54	97	46.525	ENSAPOG00000009659	tsen54	99	43.880	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0017417	Tsen54	99	76.415	ENSAMEG00000009414	TSEN54	99	76.981	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0017417	Tsen54	97	46.004	ENSAOCG00000000152	tsen54	95	46.004	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.809	ENSAPEG00000018931	tsen54	94	45.809	Amphiprion_percula
MGP_CAROLIEiJ_G0017417	Tsen54	97	43.702	ENSATEG00000019860	tsen54	97	44.190	Anabas_testudineus
MGP_CAROLIEiJ_G0017417	Tsen54	86	52.061	ENSAPLG00000009419	TSEN54	100	52.061	Anas_platyrhynchos
MGP_CAROLIEiJ_G0017417	Tsen54	99	52.273	ENSACAG00000006714	TSEN54	99	52.632	Anolis_carolinensis
MGP_CAROLIEiJ_G0017417	Tsen54	99	78.998	ENSANAG00000024061	TSEN54	99	79.429	Aotus_nancymaae
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.665	ENSACLG00000019800	tsen54	96	45.665	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0017417	Tsen54	97	46.199	ENSAMXG00000006546	tsen54	96	46.199	Astyanax_mexicanus
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.302	ENSBTAG00000000824	TSEN54	100	79.096	Bos_taurus
MGP_CAROLIEiJ_G0017417	Tsen54	99	77.457	ENSCJAG00000014278	TSEN54	99	77.905	Callithrix_jacchus
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.719	ENSCAFG00000004798	TSEN54	100	79.284	Canis_familiaris
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.719	ENSCAFG00020000312	TSEN54	100	79.284	Canis_lupus_dingo
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.238	ENSCHIG00000019908	TSEN54	100	79.238	Capra_hircus
MGP_CAROLIEiJ_G0017417	Tsen54	86	74.725	ENSTSYG00000037439	TSEN54	100	75.385	Carlito_syrichta
MGP_CAROLIEiJ_G0017417	Tsen54	99	78.035	ENSCCAG00000036624	TSEN54	99	78.095	Cebus_capucinus
MGP_CAROLIEiJ_G0017417	Tsen54	97	79.688	ENSCATG00000042877	TSEN54	99	79.810	Cercocebus_atys
MGP_CAROLIEiJ_G0017417	Tsen54	97	80.822	ENSCLAG00000002924	TSEN54	99	80.725	Chinchilla_lanigera
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.087	ENSCSAG00000004809	TSEN54	100	79.468	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0017417	Tsen54	99	55.037	ENSCPBG00000028071	TSEN54	99	55.037	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.897	ENSCANG00000028053	TSEN54	100	78.897	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0017417	Tsen54	100	88.952	ENSCGRG00001020029	Tsen54	100	88.952	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0017417	Tsen54	84	87.557	ENSCGRG00000016289	Tsen54	100	87.557	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0017417	Tsen54	80	38.283	ENSCSEG00000020586	tsen54	99	38.283	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0017417	Tsen54	80	42.824	ENSDARG00000036844	tsen54	99	44.550	Danio_rerio
MGP_CAROLIEiJ_G0017417	Tsen54	100	74.200	ENSDNOG00000018452	TSEN54	100	76.083	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0017417	Tsen54	100	81.333	ENSDORG00000004073	Tsen54	100	81.333	Dipodomys_ordii
MGP_CAROLIEiJ_G0017417	Tsen54	97	35.305	ENSEBUG00000005203	TSEN54	95	35.305	Eptatretus_burgeri
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.491	ENSEASG00005000579	TSEN54	100	78.491	Equus_asinus_asinus
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.302	ENSECAG00000004924	TSEN54	100	78.302	Equus_caballus
MGP_CAROLIEiJ_G0017417	Tsen54	86	71.772	ENSEEUG00000008467	TSEN54	100	72.210	Erinaceus_europaeus
MGP_CAROLIEiJ_G0017417	Tsen54	97	44.023	ENSELUG00000017703	tsen54	90	44.023	Esox_lucius
MGP_CAROLIEiJ_G0017417	Tsen54	99	78.409	ENSFCAG00000023712	TSEN54	99	78.977	Felis_catus
MGP_CAROLIEiJ_G0017417	Tsen54	95	51.984	ENSFALG00000001119	TSEN54	99	50.857	Ficedula_albicollis
MGP_CAROLIEiJ_G0017417	Tsen54	86	80.846	ENSFDAG00000019090	TSEN54	99	80.846	Fukomys_damarensis
MGP_CAROLIEiJ_G0017417	Tsen54	97	46.654	ENSFHEG00000005470	tsen54	96	46.654	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0017417	Tsen54	76	46.429	ENSGMOG00000013146	tsen54	92	46.429	Gadus_morhua
MGP_CAROLIEiJ_G0017417	Tsen54	95	48.819	ENSGALG00000047163	TSEN54	98	48.819	Gallus_gallus
MGP_CAROLIEiJ_G0017417	Tsen54	99	45.507	ENSGAFG00000005111	tsen54	99	45.315	Gambusia_affinis
MGP_CAROLIEiJ_G0017417	Tsen54	96	43.798	ENSGACG00000014987	tsen54	99	43.798	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0017417	Tsen54	100	54.935	ENSGAGG00000006825	TSEN54	99	54.935	Gopherus_agassizii
MGP_CAROLIEiJ_G0017417	Tsen54	97	79.134	ENSGGOG00000009417	TSEN54	100	79.528	Gorilla_gorilla
MGP_CAROLIEiJ_G0017417	Tsen54	87	43.617	ENSHBUG00000018296	tsen54	99	38.249	Haplochromis_burtoni
MGP_CAROLIEiJ_G0017417	Tsen54	100	81.714	ENSHGLG00000007979	TSEN54	100	81.714	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0017417	Tsen54	100	80.762	ENSHGLG00100005497	TSEN54	100	80.762	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017417	Tsen54	80	42.191	ENSHCOG00000007481	tsen54	99	42.191	Hippocampus_comes
MGP_CAROLIEiJ_G0017417	Tsen54	99	41.777	ENSIPUG00000000590	tsen54	99	42.533	Ictalurus_punctatus
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.286	ENSSTOG00000012883	TSEN54	100	78.286	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0017417	Tsen54	100	81.784	ENSJJAG00000007365	Tsen54	100	81.784	Jaculus_jaculus
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.833	ENSKMAG00000006944	tsen54	97	45.833	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0017417	Tsen54	97	42.994	ENSLBEG00000004199	tsen54	97	43.378	Labrus_bergylta
MGP_CAROLIEiJ_G0017417	Tsen54	97	46.198	ENSLACG00000009497	TSEN54	100	46.198	Latimeria_chalumnae
MGP_CAROLIEiJ_G0017417	Tsen54	97	46.958	ENSLOCG00000011191	tsen54	97	47.582	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0017417	Tsen54	99	73.724	ENSLAFG00000011655	TSEN54	99	73.724	Loxodonta_africana
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.278	ENSMFAG00000000712	TSEN54	100	79.658	Macaca_fascicularis
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.087	ENSMNEG00000029199	TSEN54	100	79.468	Macaca_nemestrina
MGP_CAROLIEiJ_G0017417	Tsen54	86	77.876	ENSMLEG00000044168	TSEN54	88	78.319	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0017417	Tsen54	98	43.264	ENSMAMG00000019773	tsen54	97	44.275	Mastacembelus_armatus
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.665	ENSMZEG00005000884	tsen54	96	45.665	Maylandia_zebra
MGP_CAROLIEiJ_G0017417	Tsen54	99	48.767	ENSMGAG00000009556	TSEN54	99	48.767	Meleagris_gallopavo
MGP_CAROLIEiJ_G0017417	Tsen54	100	88.571	ENSMAUG00000016838	Tsen54	100	88.571	Mesocricetus_auratus
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.327	ENSMICG00000044012	TSEN54	100	79.087	Microcebus_murinus
MGP_CAROLIEiJ_G0017417	Tsen54	100	89.524	ENSMOCG00000021585	Tsen54	100	89.524	Microtus_ochrogaster
MGP_CAROLIEiJ_G0017417	Tsen54	96	41.929	ENSMMOG00000020189	tsen54	85	63.636	Mola_mola
MGP_CAROLIEiJ_G0017417	Tsen54	98	64.728	ENSMODG00000007438	TSEN54	98	64.695	Monodelphis_domestica
MGP_CAROLIEiJ_G0017417	Tsen54	97	43.810	ENSMALG00000020573	tsen54	97	43.939	Monopterus_albus
MGP_CAROLIEiJ_G0017417	Tsen54	100	97.524	ENSMUSG00000020781	Tsen54	100	97.524	Mus_musculus
MGP_CAROLIEiJ_G0017417	Tsen54	100	94.856	MGP_PahariEiJ_G0018547	Tsen54	100	94.856	Mus_pahari
MGP_CAROLIEiJ_G0017417	Tsen54	100	97.333	MGP_SPRETEiJ_G0018262	Tsen54	100	97.333	Mus_spretus
MGP_CAROLIEiJ_G0017417	Tsen54	100	77.401	ENSMPUG00000013870	TSEN54	100	77.778	Mustela_putorius_furo
MGP_CAROLIEiJ_G0017417	Tsen54	100	75.330	ENSMLUG00000015298	TSEN54	100	75.895	Myotis_lucifugus
MGP_CAROLIEiJ_G0017417	Tsen54	100	84.381	ENSNGAG00000015673	Tsen54	100	84.381	Nannospalax_galili
MGP_CAROLIEiJ_G0017417	Tsen54	89	60.759	ENSMEUG00000011908	TSEN54	100	60.759	Notamacropus_eugenii
MGP_CAROLIEiJ_G0017417	Tsen54	100	72.865	ENSOPRG00000012513	TSEN54	100	72.865	Ochotona_princeps
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.087	ENSONIG00000009543	tsen54	96	45.087	Oreochromis_niloticus
MGP_CAROLIEiJ_G0017417	Tsen54	99	69.981	ENSOCUG00000009875	TSEN54	99	71.107	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017417	Tsen54	97	44.553	ENSORLG00000000852	tsen54	97	44.553	Oryzias_latipes
MGP_CAROLIEiJ_G0017417	Tsen54	97	44.094	ENSORLG00020018221	tsen54	97	44.094	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0017417	Tsen54	97	44.094	ENSORLG00015009413	tsen54	98	44.094	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.168	ENSOMEG00000014402	tsen54	94	45.168	Oryzias_melastigma
MGP_CAROLIEiJ_G0017417	Tsen54	100	74.335	ENSOGAG00000001442	TSEN54	100	74.335	Otolemur_garnettii
MGP_CAROLIEiJ_G0017417	Tsen54	86	73.246	ENSOARG00000010361	TSEN54	100	74.179	Ovis_aries
MGP_CAROLIEiJ_G0017417	Tsen54	94	78.831	ENSPPAG00000043519	TSEN54	100	78.831	Pan_paniscus
MGP_CAROLIEiJ_G0017417	Tsen54	99	78.220	ENSPPRG00000009162	TSEN54	99	78.788	Panthera_pardus
MGP_CAROLIEiJ_G0017417	Tsen54	86	76.770	ENSPTIG00000019312	TSEN54	96	77.212	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.658	ENSPTRG00000009646	TSEN54	100	80.038	Pan_troglodytes
MGP_CAROLIEiJ_G0017417	Tsen54	99	79.048	ENSPANG00000020133	TSEN54	99	79.429	Papio_anubis
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.389	ENSPKIG00000023018	tsen54	100	45.558	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0017417	Tsen54	80	52.315	ENSPSIG00000012807	TSEN54	99	52.315	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0017417	Tsen54	92	36.089	ENSPMGG00000019578	tsen54	99	36.089	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0017417	Tsen54	100	88.762	ENSPEMG00000014857	Tsen54	100	88.762	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0017417	Tsen54	99	45.522	ENSPFOG00000022740	tsen54	99	45.896	Poecilia_formosa
MGP_CAROLIEiJ_G0017417	Tsen54	99	45.403	ENSPLAG00000014847	tsen54	99	45.779	Poecilia_latipinna
MGP_CAROLIEiJ_G0017417	Tsen54	99	45.403	ENSPMEG00000022876	tsen54	99	45.779	Poecilia_mexicana
MGP_CAROLIEiJ_G0017417	Tsen54	99	45.198	ENSPREG00000013090	tsen54	99	45.574	Poecilia_reticulata
MGP_CAROLIEiJ_G0017417	Tsen54	91	73.013	ENSPPYG00000008629	TSEN54	100	73.849	Pongo_abelii
MGP_CAROLIEiJ_G0017417	Tsen54	95	67.391	ENSPCAG00000002093	TSEN54	99	67.391	Procavia_capensis
MGP_CAROLIEiJ_G0017417	Tsen54	99	79.924	ENSPCOG00000027880	TSEN54	100	80.608	Propithecus_coquereli
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.096	ENSPVAG00000008446	TSEN54	100	79.096	Pteropus_vampyrus
MGP_CAROLIEiJ_G0017417	Tsen54	92	44.869	ENSPNYG00000010217	tsen54	99	44.869	Pundamilia_nyererei
MGP_CAROLIEiJ_G0017417	Tsen54	97	44.061	ENSPNAG00000003770	tsen54	97	43.870	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0017417	Tsen54	100	92.000	ENSRNOG00000004598	Tsen54	100	92.000	Rattus_norvegicus
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.278	ENSRBIG00000043040	TSEN54	100	79.278	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017417	Tsen54	100	79.087	ENSRROG00000030797	TSEN54	100	79.087	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017417	Tsen54	99	75.238	ENSSBOG00000013543	TSEN54	99	75.619	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0017417	Tsen54	100	63.303	ENSSHAG00000018127	TSEN54	100	63.303	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0017417	Tsen54	81	42.824	ENSSFOG00015004093	tsen54	100	43.056	Scleropages_formosus
MGP_CAROLIEiJ_G0017417	Tsen54	97	42.697	ENSSMAG00000012449	tsen54	99	43.071	Scophthalmus_maximus
MGP_CAROLIEiJ_G0017417	Tsen54	97	44.000	ENSSDUG00000021506	tsen54	97	44.000	Seriola_dumerili
MGP_CAROLIEiJ_G0017417	Tsen54	97	44.762	ENSSLDG00000016303	tsen54	97	44.762	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0017417	Tsen54	86	50.350	ENSSPUG00000008988	TSEN54	100	49.776	Sphenodon_punctatus
MGP_CAROLIEiJ_G0017417	Tsen54	92	44.990	ENSSPAG00000008098	-	99	44.990	Stegastes_partitus
MGP_CAROLIEiJ_G0017417	Tsen54	80	40.662	ENSSPAG00000008047	tsen54	99	40.662	Stegastes_partitus
MGP_CAROLIEiJ_G0017417	Tsen54	100	78.154	ENSSSCG00000036852	TSEN54	100	78.719	Sus_scrofa
MGP_CAROLIEiJ_G0017417	Tsen54	86	51.322	ENSTGUG00000008548	TSEN54	100	51.322	Taeniopygia_guttata
MGP_CAROLIEiJ_G0017417	Tsen54	97	45.898	ENSTRUG00000004230	tsen54	96	46.094	Takifugu_rubripes
MGP_CAROLIEiJ_G0017417	Tsen54	86	76.856	ENSTTRG00000015828	TSEN54	100	77.293	Tursiops_truncatus
MGP_CAROLIEiJ_G0017417	Tsen54	81	75.116	ENSUAMG00000010045	TSEN54	100	75.116	Ursus_americanus
MGP_CAROLIEiJ_G0017417	Tsen54	84	75.281	ENSUMAG00000008979	TSEN54	100	75.955	Ursus_maritimus
MGP_CAROLIEiJ_G0017417	Tsen54	97	78.363	ENSVVUG00000011411	TSEN54	98	78.835	Vulpes_vulpes
MGP_CAROLIEiJ_G0017417	Tsen54	99	49.341	ENSXETG00000012532	tsen54	99	71.667	Xenopus_tropicalis
MGP_CAROLIEiJ_G0017417	Tsen54	97	43.026	ENSXCOG00000018245	tsen54	99	43.026	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0017417	Tsen54	99	45.802	ENSXMAG00000018818	tsen54	99	45.802	Xiphophorus_maculatus