EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0017465 (Gene tree)
Gene ID: 110304607
Gene Symbol: Tnrc6c
Alias: 9930033H14Rik
Full Name: trinucleotide repeat containing 6C
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 105901 bases
Position: chr11:113536068-113641968
Accession: 2443265
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0031262	Ago_hook	PF10427.9	1.5e-23	1	1
MGP_CAROLIEiJ_P0031264	Ago_hook	PF10427.9	1.5e-23	1	1
MGP_CAROLIEiJ_P0031265	Ago_hook	PF10427.9	1.7e-23	1	1
MGP_CAROLIEiJ_P0031265	RRM_1	PF00076.22	0.0004	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0031262	-	8735	-	MGP_CAROLIEiJ_P0031262	1900 (aa)	-	-
MGP_CAROLIEiJ_T0031263	-	11660	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0031266	-	743	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0031267	-	1852	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0031264	-	8858	-	MGP_CAROLIEiJ_P0031264	1900 (aa)	-	-
MGP_CAROLIEiJ_T0031265	-	6613	-	MGP_CAROLIEiJ_P0031265	1732 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0017465's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0017465's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	35.609	MGP_CAROLIEiJ_G0020043	Tnrc6b	96	34.755
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	40.741	MGP_CAROLIEiJ_G0030425	Tnrc6a	98	44.753

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.733	ENSG00000078687	TNRC6C	100	91.243	Homo_sapiens
MGP_CAROLIEiJ_G0017465	Tnrc6c	77	54.786	ENSAPOG00000019749	tnrc6c1	98	49.490	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	85.810	ENSAMEG00000013756	TNRC6C	99	86.144	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	50.865	ENSACIG00000008075	tnrc6c1	98	51.811	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0017465	Tnrc6c	75	68.871	ENSAOCG00000023968	tnrc6c1	99	48.633	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0017465	Tnrc6c	77	54.282	ENSAPEG00000009020	tnrc6c1	99	48.836	Amphiprion_percula
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	83.120	ENSAPLG00000005456	TNRC6C	100	82.086	Anas_platyrhynchos
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	83.802	ENSACAG00000016198	TNRC6C	98	82.656	Anolis_carolinensis
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.334	ENSANAG00000021554	TNRC6C	100	91.060	Aotus_nancymaae
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.068	ENSACLG00000000424	tnrc6c1	99	46.397	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	85.722	ENSBTAG00000018658	TNRC6C	100	88.284	Bos_taurus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.446	ENSCJAG00000019431	TNRC6C	100	90.882	Callithrix_jacchus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	88.119	ENSCAFG00000005224	TNRC6C	99	87.617	Canis_familiaris
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	89.742	ENSCAFG00020006661	TNRC6C	100	89.396	Canis_lupus_dingo
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	86.471	ENSCHIG00000026004	TNRC6C	100	86.270	Capra_hircus
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	90.261	ENSTSYG00000005403	TNRC6C	100	90.377	Carlito_syrichta
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	84.602	ENSCAPG00000007307	TNRC6C	99	85.348	Cavia_aperea
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.631	ENSCPOG00000000467	TNRC6C	100	90.035	Cavia_porcellus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.839	ENSCCAG00000030524	TNRC6C	100	91.356	Cebus_capucinus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.783	ENSCATG00000033135	TNRC6C	100	91.237	Cercocebus_atys
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	91.993	ENSCLAG00000011139	TNRC6C	99	91.122	Chinchilla_lanigera
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	89.121	ENSCSAG00000005167	TNRC6C	99	88.542	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0017465	Tnrc6c	76	90.431	ENSCHOG00000000088	TNRC6C	75	89.694	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	86.207	ENSCPBG00000027960	TNRC6C	100	86.331	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.503	ENSCANG00000041771	TNRC6C	100	90.941	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	95.172	ENSCGRG00001022686	Tnrc6c	100	94.911	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	95.612	ENSCGRG00000018041	Tnrc6c	100	94.911	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0017465	Tnrc6c	77	52.617	ENSCSEG00000012744	tnrc6c1	98	47.419	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	52.026	ENSDARG00000076847	tnrc6c1	99	52.787	Danio_rerio
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	86.903	ENSDNOG00000003247	TNRC6C	99	84.823	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	87.034	ENSDORG00000004558	Tnrc6c	100	87.832	Dipodomys_ordii
MGP_CAROLIEiJ_G0017465	Tnrc6c	90	81.913	ENSETEG00000005527	TNRC6C	90	82.000	Echinops_telfairi
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	90.101	ENSEASG00005004799	TNRC6C	100	90.219	Equus_asinus_asinus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.868	ENSECAG00000012486	TNRC6C	99	89.185	Equus_caballus
MGP_CAROLIEiJ_G0017465	Tnrc6c	96	88.325	ENSEEUG00000010008	TNRC6C	96	88.325	Erinaceus_europaeus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	85.506	ENSFCAG00000028358	TNRC6C	100	88.305	Felis_catus
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	82.813	ENSFALG00000000848	TNRC6C	100	82.643	Ficedula_albicollis
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	90.899	ENSFDAG00000010368	TNRC6C	100	91.417	Fukomys_damarensis
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.121	ENSFHEG00000002936	tnrc6c1	99	46.553	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	84.741	ENSGALG00000001725	TNRC6C	100	86.663	Gallus_gallus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	48.650	ENSGAFG00000019019	tnrc6c1	99	48.040	Gambusia_affinis
MGP_CAROLIEiJ_G0017465	Tnrc6c	77	53.190	ENSGACG00000012320	tnrc6c1	97	47.869	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	85.698	ENSGAGG00000022043	TNRC6C	99	85.239	Gopherus_agassizii
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.117	ENSGGOG00000011304	TNRC6C	100	90.473	Gorilla_gorilla
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	50.068	ENSHBUG00000010846	tnrc6c1	99	51.012	Haplochromis_burtoni
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	91.187	ENSHGLG00000004809	TNRC6C	99	90.276	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	90.482	ENSHGLG00100012597	TNRC6C	99	90.489	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	52.531	ENSIPUG00000000818	tnrc6c1	98	51.689	Ictalurus_punctatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	91.139	ENSSTOG00000009101	TNRC6C	100	91.427	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	91.437	ENSJJAG00000017055	Tnrc6c	99	90.740	Jaculus_jaculus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.510	ENSKMAG00000021023	tnrc6c1	97	50.563	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	75.100	ENSLACG00000015283	TNRC6C	100	75.214	Latimeria_chalumnae
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	56.439	ENSLOCG00000013377	tnrc6c1	99	56.250	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.335	ENSLAFG00000011122	TNRC6C	99	89.102	Loxodonta_africana
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.839	ENSMFAG00000043943	TNRC6C	100	91.297	Macaca_fascicularis
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.239	ENSMMUG00000011924	TNRC6C	100	91.297	Macaca_mulatta
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.895	ENSMNEG00000030405	TNRC6C	100	91.356	Macaca_nemestrina
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.839	ENSMLEG00000033436	TNRC6C	100	91.297	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0017465	Tnrc6c	95	52.643	ENSMAMG00000023613	tnrc6c1	97	50.431	Mastacembelus_armatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	49.932	ENSMZEG00005010920	tnrc6c1	97	49.868	Maylandia_zebra
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	77.448	ENSMGAG00000003906	TNRC6C	100	77.218	Meleagris_gallopavo
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	94.675	ENSMAUG00000021618	Tnrc6c	100	95.148	Mesocricetus_auratus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.568	ENSMICG00000003952	TNRC6C	100	92.007	Microcebus_murinus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	96.882	ENSMOCG00000015879	Tnrc6c	100	96.882	Microtus_ochrogaster
MGP_CAROLIEiJ_G0017465	Tnrc6c	76	55.371	ENSMMOG00000005203	tnrc6c1	100	49.492	Mola_mola
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	85.338	ENSMODG00000001785	TNRC6C	99	84.758	Monodelphis_domestica
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	99.158	ENSMUSG00000025571	Tnrc6c	100	99.158	Mus_musculus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	98.961	MGP_PahariEiJ_G0018593	Tnrc6c	100	98.961	Mus_pahari
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	99.211	MGP_SPRETEiJ_G0018309	Tnrc6c	100	99.211	Mus_spretus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	85.980	ENSMPUG00000013348	TNRC6C	98	85.432	Mustela_putorius_furo
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	82.189	ENSMLUG00000014431	TNRC6C	98	81.250	Myotis_lucifugus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	93.736	ENSNGAG00000012203	Tnrc6c	99	93.926	Nannospalax_galili
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.699	ENSNBRG00000005344	tnrc6c1	99	46.903	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	86.139	ENSNLEG00000000047	TNRC6C	99	86.461	Nomascus_leucogenys
MGP_CAROLIEiJ_G0017465	Tnrc6c	98	79.988	ENSMEUG00000005104	TNRC6C	100	79.988	Notamacropus_eugenii
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	91.637	ENSODEG00000012499	TNRC6C	100	91.934	Octodon_degus
MGP_CAROLIEiJ_G0017465	Tnrc6c	87	52.921	ENSONIG00000002210	tnrc6c1	96	53.660	Oreochromis_niloticus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	82.979	ENSOANG00000009758	-	92	82.979	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0017465	Tnrc6c	85	78.907	ENSOCUG00000006122	TNRC6C	95	77.016	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.323	ENSORLG00000009837	tnrc6c1	100	67.286	Oryzias_latipes
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	46.170	ENSORLG00020016510	tnrc6c1	100	48.084	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0017465	Tnrc6c	81	42.243	ENSORLG00015000171	tnrc6c1	98	43.331	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.916	ENSOMEG00000000357	tnrc6c1	99	47.657	Oryzias_melastigma
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	89.101	ENSOGAG00000007197	TNRC6C	100	89.217	Otolemur_garnettii
MGP_CAROLIEiJ_G0017465	Tnrc6c	96	82.401	ENSOARG00000006041	TNRC6C	97	82.404	Ovis_aries
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.671	ENSPPAG00000027160	TNRC6C	100	91.119	Pan_paniscus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	85.618	ENSPPRG00000018881	TNRC6C	100	88.423	Panthera_pardus
MGP_CAROLIEiJ_G0017465	Tnrc6c	90	83.513	ENSPTIG00000008791	TNRC6C	86	83.513	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.671	ENSPTRG00000009699	TNRC6C	100	91.119	Pan_troglodytes
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.839	ENSPANG00000019994	TNRC6C	100	91.459	Papio_anubis
MGP_CAROLIEiJ_G0017465	Tnrc6c	90	61.728	ENSPKIG00000005428	tnrc6c1	98	51.201	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	84.080	ENSPSIG00000018069	TNRC6C	100	83.851	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0017465	Tnrc6c	63	54.624	ENSPMGG00000022911	tnrc6c1	97	63.968	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	96.316	ENSPEMG00000009785	Tnrc6c	100	96.316	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0017465	Tnrc6c	56	83.625	ENSPCIG00000017421	-	99	83.625	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	48.894	ENSPFOG00000012560	tnrc6c1	97	53.983	Poecilia_formosa
MGP_CAROLIEiJ_G0017465	Tnrc6c	94	50.086	ENSPLAG00000021055	tnrc6c1	97	49.971	Poecilia_latipinna
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.183	ENSPPYG00000008679	TNRC6C	98	88.750	Pongo_abelii
MGP_CAROLIEiJ_G0017465	Tnrc6c	93	92.891	ENSPCAG00000012510	TNRC6C	90	92.891	Procavia_capensis
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	92.481	ENSPCOG00000021451	TNRC6C	100	92.540	Propithecus_coquereli
MGP_CAROLIEiJ_G0017465	Tnrc6c	96	89.831	ENSPVAG00000002008	TNRC6C	95	89.831	Pteropus_vampyrus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	46.681	ENSPNYG00000014477	tnrc6c1	97	51.150	Pundamilia_nyererei
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	97.743	ENSRNOG00000022395	Tnrc6c	100	97.743	Rattus_norvegicus
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.727	ENSRBIG00000027777	TNRC6C	100	91.178	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.783	ENSRROG00000042912	TNRC6C	100	91.237	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	88.576	ENSSBOG00000023981	TNRC6C	100	88.812	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0017465	Tnrc6c	51	86.364	ENSSHAG00000018330	-	100	85.714	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0017465	Tnrc6c	65	55.889	ENSSFOG00015004735	-	99	60.313	Scleropages_formosus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	47.663	ENSSMAG00000012761	tnrc6c1	99	50.579	Scophthalmus_maximus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	49.584	ENSSDUG00000002366	tnrc6c1	98	49.946	Seriola_dumerili
MGP_CAROLIEiJ_G0017465	Tnrc6c	91	49.734	ENSSLDG00000025613	tnrc6c1	97	50.228	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0017465	Tnrc6c	91	89.655	ENSSARG00000006816	TNRC6C	91	89.427	Sorex_araneus
MGP_CAROLIEiJ_G0017465	Tnrc6c	80	82.431	ENSSPUG00000007341	TNRC6C	98	82.639	Sphenodon_punctatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	76	53.715	ENSSPAG00000014977	tnrc6c1	98	48.144	Stegastes_partitus
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	84.647	ENSSSCG00000034373	TNRC6C	100	84.884	Sus_scrofa
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	86.789	ENSTGUG00000007733	TNRC6C	100	86.674	Taeniopygia_guttata
MGP_CAROLIEiJ_G0017465	Tnrc6c	76	52.805	ENSTRUG00000011685	tnrc6c1	100	48.702	Takifugu_rubripes
MGP_CAROLIEiJ_G0017465	Tnrc6c	95	54.440	ENSTNIG00000005273	tnrc6c1	100	59.725	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0017465	Tnrc6c	62	90.234	ENSTBEG00000005046	TNRC6C	99	82.042	Tupaia_belangeri
MGP_CAROLIEiJ_G0017465	Tnrc6c	100	89.259	ENSTTRG00000010828	TNRC6C	99	89.431	Tursiops_truncatus
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	88.016	ENSUMAG00000013614	TNRC6C	99	87.985	Ursus_maritimus
MGP_CAROLIEiJ_G0017465	Tnrc6c	50	80.182	ENSVPAG00000006765	-	99	80.412	Vicugna_pacos
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	90.581	ENSVVUG00000015268	TNRC6C	100	90.758	Vulpes_vulpes
MGP_CAROLIEiJ_G0017465	Tnrc6c	97	73.783	ENSXETG00000019470	tnrc6c	100	73.267	Xenopus_tropicalis
MGP_CAROLIEiJ_G0017465	Tnrc6c	99	49.610	ENSXMAG00000025971	tnrc6c1	99	49.477	Xiphophorus_maculatus