EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0017754 (Gene tree)
Gene ID: 110307475
Gene Symbol: -
Alias: -
Full Name: signal recognition particle 54
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 34534 bases
Position: chr12:50404743-50439276
Accession: 110307475
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0032281	SRP54	PF00448.22	3.6e-78	1	1
MGP_CAROLIEiJ_P0032281	SRP54_N	PF02881.19	2.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0032281	-	3292	-	MGP_CAROLIEiJ_P0032281	504 (aa)	XP_021035362	UPI00000E5A1D

Gene Model

Click here to download MGP_CAROLIEiJ_G0017754's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0017754's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSG00000100883	SRP54	100	100.000	Homo_sapiens
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSAPOG00000011314	srp54	100	96.032	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSAMEG00000015544	SRP54	100	99.802	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0017754	-	89	94.878	ENSACIG00000022831	srp54	97	94.878	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSAOCG00000019401	srp54	100	96.032	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSAPEG00000001977	srp54	100	96.032	Amphiprion_percula
MGP_CAROLIEiJ_G0017754	-	100	96.429	ENSATEG00000013877	srp54	100	96.429	Anabas_testudineus
MGP_CAROLIEiJ_G0017754	-	94	98.523	ENSAPLG00000010125	SRP54	95	98.523	Anas_platyrhynchos
MGP_CAROLIEiJ_G0017754	-	86	95.392	ENSACAG00000010631	-	100	95.392	Anolis_carolinensis
MGP_CAROLIEiJ_G0017754	-	65	81.873	ENSACAG00000001124	-	100	81.873	Anolis_carolinensis
MGP_CAROLIEiJ_G0017754	-	100	98.413	ENSACAG00000002103	-	100	98.413	Anolis_carolinensis
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSANAG00000022133	SRP54	100	99.802	Aotus_nancymaae
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSACLG00000015866	srp54	100	96.230	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0017754	-	100	95.833	ENSAMXG00000032669	SRP54	100	95.833	Astyanax_mexicanus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSBTAG00000019085	SRP54	100	99.802	Bos_taurus
MGP_CAROLIEiJ_G0017754	-	98	71.888	WBGene00009012	F21D5.7	100	71.888	Caenorhabditis_elegans
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCJAG00000006581	SRP54	100	99.802	Callithrix_jacchus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCAFG00000013331	SRP54	100	99.802	Canis_familiaris
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCAFG00020023427	SRP54	100	99.802	Canis_lupus_dingo
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCHIG00000026345	SRP54	100	99.802	Capra_hircus
MGP_CAROLIEiJ_G0017754	-	100	99.603	ENSTSYG00000002680	-	100	99.603	Carlito_syrichta
MGP_CAROLIEiJ_G0017754	-	94	88.421	ENSTSYG00000035333	-	93	88.421	Carlito_syrichta
MGP_CAROLIEiJ_G0017754	-	94	64.286	ENSCAPG00000008780	SRP54	100	64.286	Cavia_aperea
MGP_CAROLIEiJ_G0017754	-	100	99.405	ENSCPOG00000003691	SRP54	100	99.405	Cavia_porcellus
MGP_CAROLIEiJ_G0017754	-	90	99.524	ENSCCAG00000024179	SRP54	100	99.761	Cebus_capucinus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCATG00000034083	SRP54	100	99.802	Cercocebus_atys
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCLAG00000015076	SRP54	100	99.802	Chinchilla_lanigera
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCSAG00000015575	SRP54	100	99.802	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0017754	-	95	87.734	ENSCHOG00000008986	SRP54	100	87.734	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0017754	-	100	99.008	ENSCPBG00000026195	SRP54	100	99.008	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0017754	-	100	81.746	ENSCING00000007380	-	100	81.746	Ciona_intestinalis
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCANG00000028532	SRP54	100	99.802	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSCGRG00001009525	-	100	99.802	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0017754	-	76	99.740	ENSCGRG00000009453	-	89	99.740	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0017754	-	100	95.238	ENSCSEG00000012392	srp54	100	95.238	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSCVAG00000010395	srp54	100	96.032	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSDARG00000098367	srp54	100	96.230	Danio_rerio
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSDNOG00000032525	SRP54	100	99.802	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0017754	-	89	84.821	ENSDORG00000005159	-	97	84.821	Dipodomys_ordii
MGP_CAROLIEiJ_G0017754	-	96	77.732	FBgn0010747	Srp54k	98	77.309	Drosophila_melanogaster
MGP_CAROLIEiJ_G0017754	-	83	58.373	ENSETEG00000012102	-	99	58.373	Echinops_telfairi
MGP_CAROLIEiJ_G0017754	-	100	98.611	ENSETEG00000016307	-	100	98.611	Echinops_telfairi
MGP_CAROLIEiJ_G0017754	-	100	87.302	ENSEBUG00000009437	-	100	87.302	Eptatretus_burgeri
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSEASG00005002057	SRP54	100	99.802	Equus_asinus_asinus
MGP_CAROLIEiJ_G0017754	-	99	99.598	ENSECAG00000018042	SRP54	98	99.598	Equus_caballus
MGP_CAROLIEiJ_G0017754	-	100	83.532	ENSEEUG00000001511	SRP54	100	83.532	Erinaceus_europaeus
MGP_CAROLIEiJ_G0017754	-	100	95.437	ENSELUG00000003395	srp54	100	95.437	Esox_lucius
MGP_CAROLIEiJ_G0017754	-	100	99.603	ENSFCAG00000032033	SRP54	100	99.603	Felis_catus
MGP_CAROLIEiJ_G0017754	-	100	98.611	ENSFALG00000005995	SRP54	100	98.611	Ficedula_albicollis
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSFDAG00000016767	SRP54	100	99.802	Fukomys_damarensis
MGP_CAROLIEiJ_G0017754	-	100	95.635	ENSFHEG00000004263	srp54	100	95.635	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0017754	-	95	90.167	ENSGMOG00000011391	srp54	100	90.167	Gadus_morhua
MGP_CAROLIEiJ_G0017754	-	100	98.611	ENSGALG00000023135	SRP54	100	98.611	Gallus_gallus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSGAFG00000011586	srp54	100	96.230	Gambusia_affinis
MGP_CAROLIEiJ_G0017754	-	100	95.635	ENSGACG00000004181	srp54	100	95.635	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0017754	-	100	99.008	ENSGAGG00000014766	SRP54	100	99.008	Gopherus_agassizii
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSGGOG00000002926	SRP54	100	99.802	Gorilla_gorilla
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSHBUG00000005678	srp54	100	96.230	Haplochromis_burtoni
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSHGLG00000002850	SRP54	100	99.802	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSHGLG00100005263	SRP54	100	99.802	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017754	-	100	69.109	ENSHGLG00100007281	-	100	69.109	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017754	-	100	94.246	ENSHCOG00000021127	srp54	100	94.246	Hippocampus_comes
MGP_CAROLIEiJ_G0017754	-	100	95.437	ENSIPUG00000001420	srp54	100	95.437	Ictalurus_punctatus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSSTOG00000016023	SRP54	100	99.802	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0017754	-	100	94.643	ENSJJAG00000013417	-	100	94.643	Jaculus_jaculus
MGP_CAROLIEiJ_G0017754	-	87	76.364	ENSJJAG00000016404	-	100	76.364	Jaculus_jaculus
MGP_CAROLIEiJ_G0017754	-	100	95.635	ENSKMAG00000007707	srp54	100	95.635	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSLBEG00000021122	srp54	100	96.032	Labrus_bergylta
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSLBEG00000018690	srp54	100	96.032	Labrus_bergylta
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSLACG00000017890	SRP54	100	96.032	Latimeria_chalumnae
MGP_CAROLIEiJ_G0017754	-	100	97.024	ENSLOCG00000009440	srp54	100	97.024	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSLAFG00000012007	SRP54	100	99.802	Loxodonta_africana
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSMFAG00000044371	SRP54	100	99.802	Macaca_fascicularis
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSMMUG00000015073	FAM177A1	100	99.802	Macaca_mulatta
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSMNEG00000006947	SRP54	100	99.802	Macaca_nemestrina
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSMLEG00000042251	SRP54	100	99.802	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSMAMG00000004803	srp54	100	96.230	Mastacembelus_armatus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSMZEG00005027528	srp54	100	96.230	Maylandia_zebra
MGP_CAROLIEiJ_G0017754	-	100	93.874	ENSMGAG00000012481	SRP54	100	93.874	Meleagris_gallopavo
MGP_CAROLIEiJ_G0017754	-	100	100.000	ENSMAUG00000014447	-	100	100.000	Mesocricetus_auratus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSMICG00000010270	SRP54	100	99.802	Microcebus_murinus
MGP_CAROLIEiJ_G0017754	-	87	100.000	ENSMOCG00000000948	-	100	100.000	Microtus_ochrogaster
MGP_CAROLIEiJ_G0017754	-	89	94.407	ENSMMOG00000020303	srp54	98	94.407	Mola_mola
MGP_CAROLIEiJ_G0017754	-	100	99.603	ENSMODG00000023150	-	100	99.603	Monodelphis_domestica
MGP_CAROLIEiJ_G0017754	-	100	99.603	ENSMODG00000012925	-	100	99.603	Monodelphis_domestica
MGP_CAROLIEiJ_G0017754	-	88	95.711	ENSMALG00000009163	srp54	98	95.711	Monopterus_albus
MGP_CAROLIEiJ_G0017754	-	100	99.206	ENSMUSG00000079108	Srp54c	100	99.206	Mus_musculus
MGP_CAROLIEiJ_G0017754	-	100	100.000	ENSMUSG00000073079	Srp54a	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0017754	-	100	100.000	ENSMUSG00000112449	Srp54b	100	100.000	Mus_musculus
MGP_CAROLIEiJ_G0017754	-	100	100.000	MGP_PahariEiJ_G0029510	-	100	100.000	Mus_pahari
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSMPUG00000016302	SRP54	100	99.802	Mustela_putorius_furo
MGP_CAROLIEiJ_G0017754	-	100	99.206	ENSMLUG00000008958	SRP54	100	99.206	Myotis_lucifugus
MGP_CAROLIEiJ_G0017754	-	100	89.881	ENSNGAG00000019806	-	100	89.881	Nannospalax_galili
MGP_CAROLIEiJ_G0017754	-	87	95.909	ENSNBRG00000006000	srp54	100	95.909	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSNLEG00000003496	SRP54	100	99.802	Nomascus_leucogenys
MGP_CAROLIEiJ_G0017754	-	67	100.000	ENSMEUG00000000138	-	76	100.000	Notamacropus_eugenii
MGP_CAROLIEiJ_G0017754	-	58	100.000	ENSOPRG00000014502	-	60	100.000	Ochotona_princeps
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSODEG00000004865	SRP54	100	99.802	Octodon_degus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSONIG00000011768	srp54	100	96.230	Oreochromis_niloticus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSOANG00000014051	SRP54	100	99.802	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0017754	-	100	99.206	ENSOCUG00000007838	SRP54	100	99.206	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSORLG00000010027	srp54	100	96.032	Oryzias_latipes
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSORLG00020001878	srp54	100	96.032	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSORLG00015021866	srp54	100	96.032	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0017754	-	100	95.833	ENSOMEG00000020952	srp54	100	95.833	Oryzias_melastigma
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSOGAG00000012188	SRP54	100	99.802	Otolemur_garnettii
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSOARG00000007160	SRP54	100	99.802	Ovis_aries
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSPPAG00000017434	SRP54	100	99.802	Pan_paniscus
MGP_CAROLIEiJ_G0017754	-	100	98.611	ENSPPRG00000014047	SRP54	100	98.611	Panthera_pardus
MGP_CAROLIEiJ_G0017754	-	100	99.603	ENSPTIG00000000744	SRP54	96	99.603	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSPTRG00000006259	FAM177A1	100	99.802	Pan_troglodytes
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSPANG00000023853	SRP54	100	99.802	Papio_anubis
MGP_CAROLIEiJ_G0017754	-	100	95.833	ENSPKIG00000001953	srp54	100	95.833	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0017754	-	100	98.810	ENSPSIG00000006476	SRP54	100	98.810	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0017754	-	91	93.261	ENSPMGG00000004127	srp54	99	93.261	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0017754	-	100	87.103	ENSPEMG00000019634	-	100	87.103	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0017754	-	100	88.889	ENSPMAG00000006078	-	100	88.889	Petromyzon_marinus
MGP_CAROLIEiJ_G0017754	-	100	99.603	ENSPCIG00000016175	SRP54	100	99.603	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSPFOG00000008870	srp54	100	96.230	Poecilia_formosa
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSPLAG00000009889	srp54	100	96.230	Poecilia_latipinna
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSPMEG00000008601	srp54	100	96.230	Poecilia_mexicana
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSPREG00000004505	srp54	100	96.230	Poecilia_reticulata
MGP_CAROLIEiJ_G0017754	-	100	94.643	ENSPPYG00000005739	SRP54	100	94.643	Pongo_abelii
MGP_CAROLIEiJ_G0017754	-	100	95.635	ENSPCAG00000006268	SRP54	100	95.635	Procavia_capensis
MGP_CAROLIEiJ_G0017754	-	100	97.822	ENSPCOG00000022473	SRP54	100	97.822	Propithecus_coquereli
MGP_CAROLIEiJ_G0017754	-	63	100.000	ENSPVAG00000010056	SRP54	82	100.000	Pteropus_vampyrus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSPNYG00000009717	srp54	100	96.230	Pundamilia_nyererei
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSPNAG00000008544	srp54	100	96.032	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSRNOG00000032776	Srp54a	100	99.802	Rattus_norvegicus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSRROG00000041292	SRP54	100	99.802	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017754	-	86	53.288	YPR088C	SRP54	95	48.467	Saccharomyces_cerevisiae
MGP_CAROLIEiJ_G0017754	-	94	99.789	ENSSBOG00000035145	SRP54	100	99.789	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0017754	-	68	99.708	ENSSHAG00000000671	SRP54	100	99.708	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0017754	-	100	96.429	ENSSFOG00015013920	srp54	100	96.429	Scleropages_formosus
MGP_CAROLIEiJ_G0017754	-	100	90.075	ENSSMAG00000002441	srp54	100	90.075	Scophthalmus_maximus
MGP_CAROLIEiJ_G0017754	-	100	95.833	ENSSDUG00000018586	srp54	100	95.833	Seriola_dumerili
MGP_CAROLIEiJ_G0017754	-	100	95.635	ENSSLDG00000010476	srp54	100	95.635	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSSARG00000002744	SRP54	100	99.802	Sorex_araneus
MGP_CAROLIEiJ_G0017754	-	100	99.008	ENSSPUG00000013101	SRP54	100	99.008	Sphenodon_punctatus
MGP_CAROLIEiJ_G0017754	-	100	96.032	ENSSPAG00000002354	srp54	100	96.032	Stegastes_partitus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSSSCG00000001955	SRP54	100	99.802	Sus_scrofa
MGP_CAROLIEiJ_G0017754	-	94	98.523	ENSTGUG00000011945	-	95	98.523	Taeniopygia_guttata
MGP_CAROLIEiJ_G0017754	-	100	95.238	ENSTRUG00000007057	srp54	100	95.238	Takifugu_rubripes
MGP_CAROLIEiJ_G0017754	-	100	94.841	ENSTNIG00000002589	srp54	100	94.841	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0017754	-	89	91.275	ENSTBEG00000011409	SRP54	100	91.275	Tupaia_belangeri
MGP_CAROLIEiJ_G0017754	-	100	89.881	ENSTTRG00000000928	SRP54	100	89.881	Tursiops_truncatus
MGP_CAROLIEiJ_G0017754	-	52	99.618	ENSUAMG00000012385	SRP54	100	99.618	Ursus_americanus
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSUMAG00000011234	SRP54	100	99.802	Ursus_maritimus
MGP_CAROLIEiJ_G0017754	-	94	99.578	ENSVPAG00000005668	SRP54	100	99.578	Vicugna_pacos
MGP_CAROLIEiJ_G0017754	-	100	99.802	ENSVVUG00000019962	SRP54	100	99.802	Vulpes_vulpes
MGP_CAROLIEiJ_G0017754	-	100	82.446	ENSXETG00000012290	srp54	100	82.446	Xenopus_tropicalis
MGP_CAROLIEiJ_G0017754	-	88	96.163	ENSXCOG00000004658	srp54	96	96.163	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0017754	-	100	96.230	ENSXMAG00000018315	srp54	100	96.230	Xiphophorus_maculatus