EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0017995 (Gene tree)
Gene ID: 110306973
Gene Symbol: Slirp
Alias: 1810035L17Rik
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 8607 bases
Position: chr12:81878672-81887278
Accession: 110306973
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0032999	RRM_1	PF00076.22	2.2e-14	1	1
MGP_CAROLIEiJ_P0032998	RRM_1	PF00076.22	2.6e-14	1	1
MGP_CAROLIEiJ_P0033000	RRM_1	PF00076.22	5.4e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0032999	-	327	-	MGP_CAROLIEiJ_P0032999	108 (aa)	XP_021034816	UPI000A3180FC
MGP_CAROLIEiJ_T0032998	-	2707	-	MGP_CAROLIEiJ_P0032998	112 (aa)	-	-
MGP_CAROLIEiJ_T0033000	-	335	-	MGP_CAROLIEiJ_P0033000	102 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0017995's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0017995's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0017995	Slirp	70	33.824	MGP_CAROLIEiJ_G0016948	Msi2	60	33.824
MGP_CAROLIEiJ_G0017995	Slirp	76	33.824	MGP_CAROLIEiJ_G0016311	Hnrnpab	52	33.824
MGP_CAROLIEiJ_G0017995	Slirp	73	32.911	MGP_CAROLIEiJ_G0027446	Hnrnpd	72	32.911
MGP_CAROLIEiJ_G0017995	Slirp	81	33.846	MGP_CAROLIEiJ_G0015574	Dazap1	89	33.846

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0017995	Slirp	87	70.213	ENSG00000119705	SLIRP	99	77.333	Homo_sapiens
MGP_CAROLIEiJ_G0017995	Slirp	69	56.757	ENSAPOG00000001298	slirp	74	56.757	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0017995	Slirp	84	79.121	ENSAMEG00000003975	SLIRP	100	79.121	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0017995	Slirp	81	50.000	ENSACIG00000023083	slirp	85	50.000	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0017995	Slirp	81	51.724	ENSAOCG00000006342	slirp	87	51.724	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0017995	Slirp	81	51.724	ENSAPEG00000015719	-	88	51.724	Amphiprion_percula
MGP_CAROLIEiJ_G0017995	Slirp	81	51.724	ENSAPEG00000015917	slirp	87	51.724	Amphiprion_percula
MGP_CAROLIEiJ_G0017995	Slirp	70	52.632	ENSATEG00000013525	slirp	76	52.632	Anabas_testudineus
MGP_CAROLIEiJ_G0017995	Slirp	81	49.425	ENSAMXG00000018693	slirp	87	49.425	Astyanax_mexicanus
MGP_CAROLIEiJ_G0017995	Slirp	100	74.074	ENSCJAG00000016946	SLIRP	95	78.409	Callithrix_jacchus
MGP_CAROLIEiJ_G0017995	Slirp	100	75.926	ENSCAFG00020015876	-	97	75.926	Canis_lupus_dingo
MGP_CAROLIEiJ_G0017995	Slirp	100	75.000	ENSCCAG00000030130	SLIRP	97	75.000	Cebus_capucinus
MGP_CAROLIEiJ_G0017995	Slirp	100	70.370	ENSCATG00000036327	SLIRP	95	76.136	Cercocebus_atys
MGP_CAROLIEiJ_G0017995	Slirp	90	74.227	ENSCSAG00000011736	SLIRP	96	73.148	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0017995	Slirp	77	48.810	ENSCPBG00000026327	SLIRP	85	48.810	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0017995	Slirp	69	78.378	ENSCANG00000032892	SLIRP	90	75.000	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0017995	Slirp	100	67.593	ENSCGRG00001024068	Slirp	97	67.593	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0017995	Slirp	100	67.593	ENSCGRG00000017440	Slirp	97	67.593	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0017995	Slirp	85	54.348	ENSCSEG00000015766	slirp	84	54.348	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0017995	Slirp	75	54.321	ENSCVAG00000012504	slirp	80	54.321	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0017995	Slirp	69	57.333	ENSDARG00000097753	slirp	73	57.333	Danio_rerio
MGP_CAROLIEiJ_G0017995	Slirp	81	69.318	ENSDNOG00000007721	SLIRP	97	65.741	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0017995	Slirp	100	74.074	ENSDORG00000012379	Slirp	100	72.072	Dipodomys_ordii
MGP_CAROLIEiJ_G0017995	Slirp	90	70.103	ENSETEG00000010345	SLIRP	97	68.519	Echinops_telfairi
MGP_CAROLIEiJ_G0017995	Slirp	100	80.556	ENSEASG00005020193	SLIRP	97	80.556	Equus_asinus_asinus
MGP_CAROLIEiJ_G0017995	Slirp	91	60.204	ENSEEUG00000007257	SLIRP	96	60.204	Erinaceus_europaeus
MGP_CAROLIEiJ_G0017995	Slirp	80	50.000	ENSELUG00000016800	slirp	84	50.000	Esox_lucius
MGP_CAROLIEiJ_G0017995	Slirp	81	80.682	ENSFCAG00000036326	SLIRP	90	80.682	Felis_catus
MGP_CAROLIEiJ_G0017995	Slirp	66	50.704	ENSFALG00000012583	SLIRP	86	47.312	Ficedula_albicollis
MGP_CAROLIEiJ_G0017995	Slirp	94	68.627	ENSFDAG00000008347	SLIRP	90	68.627	Fukomys_damarensis
MGP_CAROLIEiJ_G0017995	Slirp	60	56.923	ENSFHEG00000004709	slirp	71	56.923	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0017995	Slirp	69	57.333	ENSGMOG00000016948	slirp	72	57.333	Gadus_morhua
MGP_CAROLIEiJ_G0017995	Slirp	92	42.424	ENSGALG00000031238	SLIRP	100	42.424	Gallus_gallus
MGP_CAROLIEiJ_G0017995	Slirp	78	56.471	ENSGAFG00000010998	slirp	85	56.471	Gambusia_affinis
MGP_CAROLIEiJ_G0017995	Slirp	67	54.167	ENSGACG00000020137	slirp	84	54.167	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0017995	Slirp	98	52.336	ENSGAGG00000009953	SLIRP	73	52.336	Gopherus_agassizii
MGP_CAROLIEiJ_G0017995	Slirp	87	70.213	ENSGGOG00000011059	-	95	76.136	Gorilla_gorilla
MGP_CAROLIEiJ_G0017995	Slirp	100	62.037	ENSHGLG00000018491	SLIRP	97	62.037	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0017995	Slirp	100	62.037	ENSHGLG00100014153	SLIRP	97	62.037	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0017995	Slirp	81	52.273	ENSHCOG00000006795	slirp	88	52.273	Hippocampus_comes
MGP_CAROLIEiJ_G0017995	Slirp	69	54.054	ENSIPUG00000010214	SLIRP	74	54.054	Ictalurus_punctatus
MGP_CAROLIEiJ_G0017995	Slirp	90	79.381	ENSSTOG00000034316	SLIRP	97	77.778	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0017995	Slirp	85	43.478	ENSKMAG00000002038	slirp	79	43.478	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0017995	Slirp	81	50.575	ENSLBEG00000007564	slirp	87	50.575	Labrus_bergylta
MGP_CAROLIEiJ_G0017995	Slirp	81	54.023	ENSLACG00000013434	SLIRP	83	54.023	Latimeria_chalumnae
MGP_CAROLIEiJ_G0017995	Slirp	90	73.196	ENSMFAG00000042960	SLIRP	95	77.273	Macaca_fascicularis
MGP_CAROLIEiJ_G0017995	Slirp	90	72.165	ENSMMUG00000029256	SLIRP	95	77.273	Macaca_mulatta
MGP_CAROLIEiJ_G0017995	Slirp	90	73.196	ENSMNEG00000028921	SLIRP	95	77.273	Macaca_nemestrina
MGP_CAROLIEiJ_G0017995	Slirp	81	76.136	ENSMLEG00000043644	SLIRP	90	76.136	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0017995	Slirp	81	51.136	ENSMZEG00005004617	slirp	87	51.136	Maylandia_zebra
MGP_CAROLIEiJ_G0017995	Slirp	100	71.296	ENSMAUG00000003857	Slirp	97	71.296	Mesocricetus_auratus
MGP_CAROLIEiJ_G0017995	Slirp	100	67.593	ENSMICG00000012080	SLIRP	97	67.593	Microcebus_murinus
MGP_CAROLIEiJ_G0017995	Slirp	100	75.000	ENSMOCG00000016019	Slirp	100	74.107	Microtus_ochrogaster
MGP_CAROLIEiJ_G0017995	Slirp	69	53.333	ENSMMOG00000018268	slirp	75	53.333	Mola_mola
MGP_CAROLIEiJ_G0017995	Slirp	64	62.319	ENSMODG00000005207	-	97	62.319	Monodelphis_domestica
MGP_CAROLIEiJ_G0017995	Slirp	69	53.333	ENSMALG00000012581	slirp	77	53.333	Monopterus_albus
MGP_CAROLIEiJ_G0017995	Slirp	100	99.074	ENSMUSG00000021040	Slirp	100	98.214	Mus_musculus
MGP_CAROLIEiJ_G0017995	Slirp	100	98.148	MGP_SPRETEiJ_G0018840	Slirp	100	97.321	Mus_spretus
MGP_CAROLIEiJ_G0017995	Slirp	86	74.194	ENSMLUG00000024998	-	97	72.222	Myotis_lucifugus
MGP_CAROLIEiJ_G0017995	Slirp	90	76.289	ENSMLUG00000029544	-	97	74.074	Myotis_lucifugus
MGP_CAROLIEiJ_G0017995	Slirp	100	71.560	ENSNGAG00000016363	Slirp	100	71.560	Nannospalax_galili
MGP_CAROLIEiJ_G0017995	Slirp	91	65.306	ENSNLEG00000027238	-	91	69.620	Nomascus_leucogenys
MGP_CAROLIEiJ_G0017995	Slirp	100	66.667	ENSNLEG00000032459	-	95	71.591	Nomascus_leucogenys
MGP_CAROLIEiJ_G0017995	Slirp	100	71.429	ENSODEG00000012580	SLIRP	100	71.429	Octodon_degus
MGP_CAROLIEiJ_G0017995	Slirp	81	52.273	ENSONIG00000011692	slirp	87	52.273	Oreochromis_niloticus
MGP_CAROLIEiJ_G0017995	Slirp	87	58.333	ENSOANG00000022366	SLIRP	86	58.333	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0017995	Slirp	69	55.405	ENSORLG00000010761	slirp	57	55.405	Oryzias_latipes
MGP_CAROLIEiJ_G0017995	Slirp	69	56.757	ENSORLG00020022188	slirp	74	56.757	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0017995	Slirp	99	45.794	ENSORLG00015020171	slirp	99	45.455	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0017995	Slirp	69	58.108	ENSOMEG00000019321	slirp	74	58.108	Oryzias_melastigma
MGP_CAROLIEiJ_G0017995	Slirp	87	69.149	ENSPPAG00000040710	-	95	76.136	Pan_paniscus
MGP_CAROLIEiJ_G0017995	Slirp	81	80.682	ENSPPRG00000014350	SLIRP	90	80.682	Panthera_pardus
MGP_CAROLIEiJ_G0017995	Slirp	81	80.682	ENSPTIG00000014196	SLIRP	90	80.682	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0017995	Slirp	87	70.213	ENSPTRG00000030691	SLIRP	95	76.136	Pan_troglodytes
MGP_CAROLIEiJ_G0017995	Slirp	100	72.222	ENSPANG00000026323	SLIRP	95	77.273	Papio_anubis
MGP_CAROLIEiJ_G0017995	Slirp	60	52.308	ENSPKIG00000008831	slirp	64	52.308	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0017995	Slirp	64	60.870	ENSPMGG00000010541	slirp	79	60.870	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0017995	Slirp	90	76.531	ENSPEMG00000013234	Slirp	99	72.566	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0017995	Slirp	63	44.118	ENSPMAG00000009355	slirp	76	44.118	Petromyzon_marinus
MGP_CAROLIEiJ_G0017995	Slirp	73	61.728	ENSPCIG00000026842	-	87	61.728	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0017995	Slirp	88	53.684	ENSPFOG00000006758	slirp	85	53.684	Poecilia_formosa
MGP_CAROLIEiJ_G0017995	Slirp	88	53.684	ENSPLAG00000011140	slirp	85	53.684	Poecilia_latipinna
MGP_CAROLIEiJ_G0017995	Slirp	88	53.684	ENSPMEG00000019535	slirp	85	53.684	Poecilia_mexicana
MGP_CAROLIEiJ_G0017995	Slirp	88	53.684	ENSPREG00000011673	slirp	85	53.684	Poecilia_reticulata
MGP_CAROLIEiJ_G0017995	Slirp	90	68.041	ENSPPYG00000006030	SLIRP	96	67.593	Pongo_abelii
MGP_CAROLIEiJ_G0017995	Slirp	100	68.519	ENSPCOG00000015159	SLIRP	97	68.519	Propithecus_coquereli
MGP_CAROLIEiJ_G0017995	Slirp	81	57.955	ENSPNAG00000008633	slirp	88	57.955	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0017995	Slirp	90	68.041	ENSRBIG00000035817	-	99	67.593	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017995	Slirp	69	80.000	ENSRBIG00000031396	-	86	77.907	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017995	Slirp	90	74.227	ENSRBIG00000032222	-	95	77.273	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017995	Slirp	71	77.922	ENSRBIG00000032998	-	81	76.136	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0017995	Slirp	71	77.922	ENSRROG00000017133	-	92	76.136	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017995	Slirp	90	73.196	ENSRROG00000036656	-	95	76.136	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017995	Slirp	69	78.667	ENSRROG00000035604	-	86	76.744	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017995	Slirp	75	75.309	ENSRROG00000041312	-	91	73.913	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0017995	Slirp	81	76.136	ENSSBOG00000020014	SLIRP	95	76.136	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0017995	Slirp	65	61.429	ENSSFOG00015011165	slirp	71	61.429	Scleropages_formosus
MGP_CAROLIEiJ_G0017995	Slirp	100	37.037	ENSSMAG00000012930	slirp	96	37.037	Scophthalmus_maximus
MGP_CAROLIEiJ_G0017995	Slirp	81	53.409	ENSSDUG00000021883	slirp	57	53.409	Seriola_dumerili
MGP_CAROLIEiJ_G0017995	Slirp	81	53.409	ENSSLDG00000023136	slirp	78	53.409	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0017995	Slirp	70	53.947	ENSSPUG00000009346	SLIRP	78	53.947	Sphenodon_punctatus
MGP_CAROLIEiJ_G0017995	Slirp	69	52.703	ENSSPAG00000013477	slirp	74	52.703	Stegastes_partitus
MGP_CAROLIEiJ_G0017995	Slirp	100	75.000	ENSSSCG00000028167	SLIRP	97	75.000	Sus_scrofa
MGP_CAROLIEiJ_G0017995	Slirp	80	47.674	ENSTGUG00000012337	SLIRP	86	49.462	Taeniopygia_guttata
MGP_CAROLIEiJ_G0017995	Slirp	69	52.632	ENSTRUG00000020127	slirp	75	52.632	Takifugu_rubripes
MGP_CAROLIEiJ_G0017995	Slirp	100	77.778	ENSUAMG00000022445	SLIRP	97	77.778	Ursus_americanus
MGP_CAROLIEiJ_G0017995	Slirp	100	78.704	ENSUMAG00000007166	SLIRP	97	78.704	Ursus_maritimus
MGP_CAROLIEiJ_G0017995	Slirp	100	71.296	ENSVPAG00000001781	SLIRP	97	71.296	Vicugna_pacos
MGP_CAROLIEiJ_G0017995	Slirp	85	83.696	ENSVVUG00000004436	SLIRP	97	78.704	Vulpes_vulpes
MGP_CAROLIEiJ_G0017995	Slirp	66	56.338	ENSXETG00000030343	SLIRP	80	56.338	Xenopus_tropicalis
MGP_CAROLIEiJ_G0017995	Slirp	99	47.664	ENSXCOG00000009422	slirp	96	47.664	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0017995	Slirp	88	52.632	ENSXMAG00000015655	slirp	85	52.632	Xiphophorus_maculatus