EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0018216 (Gene tree)
Gene ID: 110307898
Gene Symbol: Larp4b
Alias: D13Wsu64e|Larp5
Full Name: La ribonucleoprotein domain family member 4B
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 83371 bases
Position: chr13:5663370-5746740
Accession: 110307898
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0033647	La	PF05383.17	3.5e-14	1	1
MGP_CAROLIEiJ_P0033645	La	PF05383.17	3.9e-14	1	1
MGP_CAROLIEiJ_P0033644	La	PF05383.17	4.2e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0033648	-	5160	-	MGP_CAROLIEiJ_P0033648	1719 (aa)	-	-
MGP_CAROLIEiJ_T0033649	-	384	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0033646	-	533	-	MGP_CAROLIEiJ_P0033646	36 (aa)	-	UPI00053BD835
MGP_CAROLIEiJ_T0033647	-	5719	-	MGP_CAROLIEiJ_P0033647	655 (aa)	-	-
MGP_CAROLIEiJ_T0033644	-	2720	-	MGP_CAROLIEiJ_P0033644	739 (aa)	XP_021035820	UPI000A3159B1
MGP_CAROLIEiJ_T0033645	-	2653	-	MGP_CAROLIEiJ_P0033645	661 (aa)	-	-
MGP_CAROLIEiJ_T0033651	-	4682	-	-	- (aa)	-	-
MGP_CAROLIEiJ_T0033650	-	402	-	-	- (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0018216's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0018216's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0018216	Larp4b	90	37.725	MGP_CAROLIEiJ_G0020281	Larp4	83	50.915

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.821	ENSG00000107929	LARP4B	100	89.474	Homo_sapiens
MGP_CAROLIEiJ_G0018216	Larp4b	100	50.254	ENSAPOG00000020531	LARP4B	100	54.771	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0018216	Larp4b	100	84.730	ENSAMEG00000001810	LARP4B	100	84.595	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0018216	Larp4b	86	61.831	ENSAOCG00000007887	-	79	84.768	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0018216	Larp4b	93	58.038	ENSAPEG00000002512	LARP4B	98	56.522	Amphiprion_percula
MGP_CAROLIEiJ_G0018216	Larp4b	100	60.438	ENSATEG00000012614	LARP4B	100	54.738	Anabas_testudineus
MGP_CAROLIEiJ_G0018216	Larp4b	100	78.683	ENSAPLG00000003813	LARP4B	98	76.165	Anas_platyrhynchos
MGP_CAROLIEiJ_G0018216	Larp4b	100	77.143	ENSACAG00000002858	LARP4B	100	74.000	Anolis_carolinensis
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.280	ENSANAG00000007531	-	100	87.145	Aotus_nancymaae
MGP_CAROLIEiJ_G0018216	Larp4b	100	62.969	ENSACLG00000026356	LARP4B	100	56.845	Astatotilapia_calliptera
MGP_CAROLIEiJ_G0018216	Larp4b	95	58.314	ENSAMXG00000003335	larp4b	91	53.891	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018216	Larp4b	100	81.267	ENSBTAG00000013899	LARP4B	100	81.132	Bos_taurus
MGP_CAROLIEiJ_G0018216	Larp4b	100	86.604	ENSCJAG00000018434	LARP4B	100	86.468	Callithrix_jacchus
MGP_CAROLIEiJ_G0018216	Larp4b	100	85.541	ENSCAFG00020004209	LARP4B	100	85.405	Canis_lupus_dingo
MGP_CAROLIEiJ_G0018216	Larp4b	100	80.863	ENSCHIG00000013543	LARP4B	100	80.728	Capra_hircus
MGP_CAROLIEiJ_G0018216	Larp4b	81	89.412	ENSTSYG00000002568	LARP4B	100	89.244	Carlito_syrichta
MGP_CAROLIEiJ_G0018216	Larp4b	96	83.420	ENSCAPG00000009725	LARP4B	97	78.011	Cavia_aperea
MGP_CAROLIEiJ_G0018216	Larp4b	100	92.945	ENSCPOG00000009375	LARP4B	100	89.581	Cavia_porcellus
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.415	ENSCCAG00000024869	LARP4B	100	87.280	Cebus_capucinus
MGP_CAROLIEiJ_G0018216	Larp4b	100	88.092	ENSCATG00000019750	LARP4B	100	87.957	Cercocebus_atys
MGP_CAROLIEiJ_G0018216	Larp4b	100	92.718	ENSCLAG00000011570	LARP4B	100	88.919	Chinchilla_lanigera
MGP_CAROLIEiJ_G0018216	Larp4b	66	88.710	ENSCHOG00000007831	-	66	88.710	Choloepus_hoffmanni
MGP_CAROLIEiJ_G0018216	Larp4b	100	76.400	ENSCPBG00000017063	LARP4B	100	76.267	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0018216	Larp4b	100	86.198	ENSCANG00000038021	LARP4B	100	86.062	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0018216	Larp4b	100	94.872	ENSCGRG00001022930	Larp4b	100	94.872	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018216	Larp4b	100	94.872	ENSCGRG00000006022	Larp4b	100	94.872	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0018216	Larp4b	100	53.716	ENSCSEG00000007342	LARP4B	100	53.977	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0018216	Larp4b	100	55.263	ENSCVAG00000008910	LARP4B	100	55.625	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0018216	Larp4b	90	52.471	ENSDARG00000062146	larp4b	90	53.734	Danio_rerio
MGP_CAROLIEiJ_G0018216	Larp4b	93	89.835	ENSDNOG00000045543	-	100	89.315	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0018216	Larp4b	100	89.124	ENSDORG00000009328	Larp4b	100	90.493	Dipodomys_ordii
MGP_CAROLIEiJ_G0018216	Larp4b	89	81.377	ENSETEG00000011249	LARP4B	91	82.818	Echinops_telfairi
MGP_CAROLIEiJ_G0018216	Larp4b	100	86.486	ENSEASG00005019068	-	100	86.351	Equus_asinus_asinus
MGP_CAROLIEiJ_G0018216	Larp4b	100	86.351	ENSECAG00000024040	LARP4B	100	86.216	Equus_caballus
MGP_CAROLIEiJ_G0018216	Larp4b	100	81.157	ENSEEUG00000008391	LARP4B	98	81.023	Erinaceus_europaeus
MGP_CAROLIEiJ_G0018216	Larp4b	100	59.271	ENSELUG00000008626	LARP4B	100	56.592	Esox_lucius
MGP_CAROLIEiJ_G0018216	Larp4b	86	49.250	ENSELUG00000001417	-	94	40.267	Esox_lucius
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.676	ENSFCAG00000000721	-	100	84.367	Felis_catus
MGP_CAROLIEiJ_G0018216	Larp4b	100	77.470	ENSFALG00000006961	LARP4B	100	75.333	Ficedula_albicollis
MGP_CAROLIEiJ_G0018216	Larp4b	100	93.827	ENSFDAG00000006158	LARP4B	97	89.595	Fukomys_damarensis
MGP_CAROLIEiJ_G0018216	Larp4b	100	50.973	ENSFHEG00000013037	LARP4B	65	89.916	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0018216	Larp4b	82	66.213	ENSGMOG00000010818	-	88	66.667	Gadus_morhua
MGP_CAROLIEiJ_G0018216	Larp4b	100	78.163	ENSGALG00000006672	LARP4B	100	75.697	Gallus_gallus
MGP_CAROLIEiJ_G0018216	Larp4b	100	56.774	ENSGACG00000017535	LARP4B	98	58.194	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0018216	Larp4b	90	81.213	ENSGAGG00000008598	LARP4B	100	77.924	Gopherus_agassizii
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.686	ENSGGOG00000003572	LARP4B	100	87.551	Gorilla_gorilla
MGP_CAROLIEiJ_G0018216	Larp4b	100	62.287	ENSHBUG00000007535	LARP4B	100	56.015	Haplochromis_burtoni
MGP_CAROLIEiJ_G0018216	Larp4b	100	92.018	ENSHGLG00000012936	LARP4B	100	93.322	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0018216	Larp4b	86	79.319	ENSHGLG00100017261	-	100	75.039	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0018216	Larp4b	100	90.000	ENSHGLG00100016220	-	100	89.865	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0018216	Larp4b	99	61.594	ENSHCOG00000011581	LARP4B	89	53.591	Hippocampus_comes
MGP_CAROLIEiJ_G0018216	Larp4b	96	52.333	ENSIPUG00000009705	larp4b	90	52.655	Ictalurus_punctatus
MGP_CAROLIEiJ_G0018216	Larp4b	100	95.246	ENSSTOG00000000587	LARP4B	100	87.989	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0018216	Larp4b	100	90.798	ENSJJAG00000020847	Larp4b	100	90.663	Jaculus_jaculus
MGP_CAROLIEiJ_G0018216	Larp4b	100	61.935	ENSKMAG00000021674	LARP4B	100	57.179	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0018216	Larp4b	86	60.642	ENSLBEG00000025293	-	81	60.656	Labrus_bergylta
MGP_CAROLIEiJ_G0018216	Larp4b	90	71.012	ENSLACG00000009492	LARP4B	100	66.183	Latimeria_chalumnae
MGP_CAROLIEiJ_G0018216	Larp4b	100	65.445	ENSLOCG00000012290	larp4b	100	66.282	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.740	ENSLAFG00000015334	LARP4B	100	86.331	Loxodonta_africana
MGP_CAROLIEiJ_G0018216	Larp4b	100	88.092	ENSMFAG00000001766	LARP4B	100	85.927	Macaca_fascicularis
MGP_CAROLIEiJ_G0018216	Larp4b	100	88.092	ENSMMUG00000005279	LARP4B	100	87.957	Macaca_mulatta
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.957	ENSMNEG00000014019	LARP4B	100	85.927	Macaca_nemestrina
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.703	ENSMLEG00000035198	LARP4B	100	87.568	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0018216	Larp4b	100	59.135	ENSMAMG00000013742	LARP4B	100	55.791	Mastacembelus_armatus
MGP_CAROLIEiJ_G0018216	Larp4b	81	70.796	ENSMZEG00005014594	-	100	57.299	Maylandia_zebra
MGP_CAROLIEiJ_G0018216	Larp4b	100	52.029	ENSMZEG00005006498	-	96	61.477	Maylandia_zebra
MGP_CAROLIEiJ_G0018216	Larp4b	100	79.130	ENSMGAG00000005472	LARP4B	100	74.400	Meleagris_gallopavo
MGP_CAROLIEiJ_G0018216	Larp4b	100	95.626	ENSMAUG00000021657	Larp4b	100	97.012	Mesocricetus_auratus
MGP_CAROLIEiJ_G0018216	Larp4b	100	84.832	ENSMICG00000001301	LARP4B	100	82.138	Microcebus_murinus
MGP_CAROLIEiJ_G0018216	Larp4b	100	95.173	ENSMOCG00000021452	Larp4b	100	95.958	Microtus_ochrogaster
MGP_CAROLIEiJ_G0018216	Larp4b	79	69.374	ENSMMOG00000011253	-	89	60.870	Mola_mola
MGP_CAROLIEiJ_G0018216	Larp4b	100	78.365	ENSMODG00000005957	LARP4B	100	74.206	Monodelphis_domestica
MGP_CAROLIEiJ_G0018216	Larp4b	100	49.401	ENSMALG00000012432	LARP4B	100	50.599	Monopterus_albus
MGP_CAROLIEiJ_G0018216	Larp4b	100	98.341	ENSMUSG00000033499	Larp4b	100	98.341	Mus_musculus
MGP_CAROLIEiJ_G0018216	Larp4b	100	97.429	MGP_PahariEiJ_G0019266	Larp4b	100	97.429	Mus_pahari
MGP_CAROLIEiJ_G0018216	Larp4b	100	98.190	MGP_SPRETEiJ_G0019074	Larp4b	100	98.190	Mus_spretus
MGP_CAROLIEiJ_G0018216	Larp4b	100	84.459	ENSMPUG00000016220	LARP4B	97	84.459	Mustela_putorius_furo
MGP_CAROLIEiJ_G0018216	Larp4b	93	87.908	ENSMLUG00000005880	LARP4B	100	82.395	Myotis_lucifugus
MGP_CAROLIEiJ_G0018216	Larp4b	100	90.798	ENSNGAG00000001750	Larp4b	100	90.798	Nannospalax_galili
MGP_CAROLIEiJ_G0018216	Larp4b	100	44.013	ENSNBRG00000020018	LARP4B	100	44.175	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.415	ENSNLEG00000013442	LARP4B	100	87.280	Nomascus_leucogenys
MGP_CAROLIEiJ_G0018216	Larp4b	79	84.211	ENSMEUG00000013114	-	70	84.211	Notamacropus_eugenii
MGP_CAROLIEiJ_G0018216	Larp4b	98	91.019	ENSOPRG00000003300	LARP4B	100	86.863	Ochotona_princeps
MGP_CAROLIEiJ_G0018216	Larp4b	100	86.838	ENSODEG00000001109	LARP4B	100	86.687	Octodon_degus
MGP_CAROLIEiJ_G0018216	Larp4b	100	64.334	ENSONIG00000017705	LARP4B	100	59.126	Oreochromis_niloticus
MGP_CAROLIEiJ_G0018216	Larp4b	100	77.163	ENSOANG00000006100	LARP4B	100	74.373	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0018216	Larp4b	100	88.451	ENSOCUG00000004950	LARP4B	97	88.320	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0018216	Larp4b	100	54.454	ENSORLG00000006080	LARP4B	100	54.705	Oryzias_latipes
MGP_CAROLIEiJ_G0018216	Larp4b	100	54.568	ENSORLG00020020940	LARP4B	100	54.568	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0018216	Larp4b	100	60.764	ENSORLG00015020608	LARP4B	100	55.025	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0018216	Larp4b	100	59.201	ENSOMEG00000019619	LARP4B	100	53.875	Oryzias_melastigma
MGP_CAROLIEiJ_G0018216	Larp4b	93	86.578	ENSOGAG00000011540	LARP4B	100	84.165	Otolemur_garnettii
MGP_CAROLIEiJ_G0018216	Larp4b	100	80.805	ENSOARG00000015320	LARP4B	98	80.671	Ovis_aries
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.551	ENSPPAG00000039232	LARP4B	100	87.415	Pan_paniscus
MGP_CAROLIEiJ_G0018216	Larp4b	100	84.865	ENSPPRG00000009489	LARP4B	100	84.730	Panthera_pardus
MGP_CAROLIEiJ_G0018216	Larp4b	100	84.730	ENSPTIG00000008543	LARP4B	100	84.595	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.551	ENSPTRG00000002235	LARP4B	100	87.415	Pan_troglodytes
MGP_CAROLIEiJ_G0018216	Larp4b	100	88.092	ENSPANG00000023546	LARP4B	100	86.062	Papio_anubis
MGP_CAROLIEiJ_G0018216	Larp4b	99	56.460	ENSPKIG00000012368	LARP4B	99	56.645	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0018216	Larp4b	85	85.714	ENSPSIG00000005600	LARP4B	99	85.714	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0018216	Larp4b	97	54.143	ENSPMGG00000008261	LARP4B	91	54.143	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0018216	Larp4b	100	94.993	ENSPEMG00000014052	Larp4b	100	94.858	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0018216	Larp4b	78	82.466	ENSPCIG00000006866	-	98	46.037	Phascolarctos_cinereus
MGP_CAROLIEiJ_G0018216	Larp4b	100	60.032	ENSPFOG00000000029	LARP4B	100	55.100	Poecilia_formosa
MGP_CAROLIEiJ_G0018216	Larp4b	100	55.195	ENSPLAG00000002871	LARP4B	100	55.527	Poecilia_latipinna
MGP_CAROLIEiJ_G0018216	Larp4b	100	59.935	ENSPMEG00000016361	LARP4B	100	55.473	Poecilia_mexicana
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.703	ENSPPYG00000002035	LARP4B	97	87.568	Pongo_abelii
MGP_CAROLIEiJ_G0018216	Larp4b	100	88.536	ENSPCOG00000014688	LARP4B	100	86.062	Propithecus_coquereli
MGP_CAROLIEiJ_G0018216	Larp4b	85	91.429	ENSPVAG00000009784	LARP4B	88	91.429	Pteropus_vampyrus
MGP_CAROLIEiJ_G0018216	Larp4b	100	62.969	ENSPNYG00000024252	LARP4B	100	56.696	Pundamilia_nyererei
MGP_CAROLIEiJ_G0018216	Larp4b	93	59.155	ENSPNAG00000028956	larp4b	90	54.130	Pygocentrus_nattereri
MGP_CAROLIEiJ_G0018216	Larp4b	99	96.206	ENSRNOG00000015888	Larp4b	100	96.206	Rattus_norvegicus
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.821	ENSRBIG00000033294	LARP4B	100	87.686	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0018216	Larp4b	100	87.551	ENSRROG00000033879	LARP4B	100	87.415	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0018216	Larp4b	100	81.732	ENSSBOG00000021109	LARP4B	100	81.597	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0018216	Larp4b	100	78.606	ENSSHAG00000013392	LARP4B	100	75.802	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0018216	Larp4b	91	60.000	ENSSFOG00015003256	LARP4B	90	57.527	Scleropages_formosus
MGP_CAROLIEiJ_G0018216	Larp4b	82	75.862	ENSSMAG00000005982	-	99	75.862	Scophthalmus_maximus
MGP_CAROLIEiJ_G0018216	Larp4b	100	62.267	ENSSDUG00000006704	LARP4B	100	56.663	Seriola_dumerili
MGP_CAROLIEiJ_G0018216	Larp4b	82	70.460	ENSSLDG00000020660	LARP4B	86	70.241	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0018216	Larp4b	64	98.113	ENSSARG00000001243	-	79	98.113	Sorex_araneus
MGP_CAROLIEiJ_G0018216	Larp4b	100	73.720	ENSSPUG00000002102	-	100	73.585	Sphenodon_punctatus
MGP_CAROLIEiJ_G0018216	Larp4b	84	75.272	ENSSPUG00000013734	-	99	75.117	Sphenodon_punctatus
MGP_CAROLIEiJ_G0018216	Larp4b	100	60.964	ENSSPAG00000014628	LARP4B	100	61.446	Stegastes_partitus
MGP_CAROLIEiJ_G0018216	Larp4b	100	81.081	ENSSSCG00000011162	LARP4B	100	84.539	Sus_scrofa
MGP_CAROLIEiJ_G0018216	Larp4b	100	77.875	ENSTGUG00000000811	-	100	75.636	Taeniopygia_guttata
MGP_CAROLIEiJ_G0018216	Larp4b	100	55.123	ENSTNIG00000004571	-	98	56.387	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0018216	Larp4b	98	64.891	ENSTNIG00000007991	LARP4B	99	55.355	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0018216	Larp4b	89	89.563	ENSTTRG00000011151	LARP4B	90	88.353	Tursiops_truncatus
MGP_CAROLIEiJ_G0018216	Larp4b	86	88.204	ENSUAMG00000016461	LARP4B	95	86.646	Ursus_americanus
MGP_CAROLIEiJ_G0018216	Larp4b	100	85.270	ENSUMAG00000016127	LARP4B	100	85.135	Ursus_maritimus
MGP_CAROLIEiJ_G0018216	Larp4b	57	94.944	ENSVPAG00000000128	-	73	94.944	Vicugna_pacos
MGP_CAROLIEiJ_G0018216	Larp4b	100	85.135	ENSVVUG00000008641	LARP4B	100	85.000	Vulpes_vulpes
MGP_CAROLIEiJ_G0018216	Larp4b	99	73.986	ENSXETG00000016882	larp4b	100	70.238	Xenopus_tropicalis
MGP_CAROLIEiJ_G0018216	Larp4b	100	52.821	ENSXCOG00000019952	LARP4B	68	85.039	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0018216	Larp4b	100	54.682	ENSXMAG00000021533	LARP4B	100	54.750	Xiphophorus_maculatus