EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0018274 (Gene tree)
Gene ID: 110308635
Gene Symbol: Zkscan4
Alias: -
Full Name: zinc finger with KRAB and SCAN domains 4
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 6639 bases
Position: chr13:16681200-16687838
Accession: 3649412
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	1	8
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	2	8
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	3	8
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	4	8
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	5	8
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	6	8
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	7	8
MGP_CAROLIEiJ_P0033797	zf-C2H2	PF00096.26	1.5e-47	8	8
MGP_CAROLIEiJ_P0033797	zf-met	PF12874.7	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0033797	-	2503	-	MGP_CAROLIEiJ_P0033797	508 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0018274's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0018274's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
MGP_CAROLIEiJ_G0018274	Zkscan4	56	50.617	MGP_CAROLIEiJ_G0022445	Zfp236	59	50.617
MGP_CAROLIEiJ_G0018274	Zkscan4	56	53.333	MGP_CAROLIEiJ_G0029356	Zfp574	61	50.526
MGP_CAROLIEiJ_G0018274	Zkscan4	59	43.985	MGP_CAROLIEiJ_G0018661	Zfp759	82	43.985
MGP_CAROLIEiJ_G0018274	Zkscan4	60	45.105	MGP_CAROLIEiJ_G0018660	-	68	45.105
MGP_CAROLIEiJ_G0018274	Zkscan4	55	39.130	MGP_CAROLIEiJ_G0031420	Zfp319	89	39.462
MGP_CAROLIEiJ_G0018274	Zkscan4	56	43.318	MGP_CAROLIEiJ_G0030502	-	63	43.318
MGP_CAROLIEiJ_G0018274	Zkscan4	56	43.318	MGP_CAROLIEiJ_G0030501	Zfp764	63	43.318
MGP_CAROLIEiJ_G0018274	Zkscan4	53	55.814	MGP_CAROLIEiJ_G0029612	Zfp141	55	55.814
MGP_CAROLIEiJ_G0018274	Zkscan4	56	45.276	MGP_CAROLIEiJ_G0029614	Zfp715	71	45.276
MGP_CAROLIEiJ_G0018274	Zkscan4	56	44.906	MGP_CAROLIEiJ_G0031203	Zfp882	85	44.906
MGP_CAROLIEiJ_G0018274	Zkscan4	53	50.000	MGP_CAROLIEiJ_G0024724	Zfp64	77	38.164
MGP_CAROLIEiJ_G0018274	Zkscan4	68	47.170	MGP_CAROLIEiJ_G0021128	Zfp51	82	46.591
MGP_CAROLIEiJ_G0018274	Zkscan4	60	44.664	MGP_CAROLIEiJ_G0016391	Zfp672	93	41.975
MGP_CAROLIEiJ_G0018274	Zkscan4	57	45.833	MGP_CAROLIEiJ_G0028463	Prdm5	82	44.048
MGP_CAROLIEiJ_G0018274	Zkscan4	56	37.500	MGP_CAROLIEiJ_G0028343	Repin1	95	37.500
MGP_CAROLIEiJ_G0018274	Zkscan4	53	43.333	MGP_CAROLIEiJ_G0020389	Zfp597	63	43.333
MGP_CAROLIEiJ_G0018274	Zkscan4	55	47.788	MGP_CAROLIEiJ_G0027508	Gfi1	99	47.788
MGP_CAROLIEiJ_G0018274	Zkscan4	52	40.977	MGP_CAROLIEiJ_G0026744	Zbtb17	57	40.977
MGP_CAROLIEiJ_G0018274	Zkscan4	54	49.084	MGP_CAROLIEiJ_G0018683	Zfp493	83	48.708
MGP_CAROLIEiJ_G0018274	Zkscan4	54	47.283	MGP_CAROLIEiJ_G0029135	Zfp628	61	45.274
MGP_CAROLIEiJ_G0018274	Zkscan4	53	46.886	MGP_CAROLIEiJ_G0016437	Zfp867	82	46.886
MGP_CAROLIEiJ_G0018274	Zkscan4	56	51.661	MGP_CAROLIEiJ_G0029490	Zfp420	99	51.661
MGP_CAROLIEiJ_G0018274	Zkscan4	54	45.318	MGP_CAROLIEiJ_G0021132	Zfp948	89	45.318
MGP_CAROLIEiJ_G0018274	Zkscan4	55	45.082	MGP_CAROLIEiJ_G0029427	-	89	45.200
MGP_CAROLIEiJ_G0018274	Zkscan4	84	47.692	MGP_CAROLIEiJ_G0019949	Zfp251	66	50.000
MGP_CAROLIEiJ_G0018274	Zkscan4	54	41.667	MGP_CAROLIEiJ_G0016622	Bcl6b	51	41.667
MGP_CAROLIEiJ_G0018274	Zkscan4	56	50.000	MGP_CAROLIEiJ_G0030498	Zfp768	53	48.846
MGP_CAROLIEiJ_G0018274	Zkscan4	56	41.808	MGP_CAROLIEiJ_G0029143	-	78	35.106
MGP_CAROLIEiJ_G0018274	Zkscan4	56	54.037	MGP_CAROLIEiJ_G0016306	Zfp354a	69	54.037
MGP_CAROLIEiJ_G0018274	Zkscan4	56	52.434	MGP_CAROLIEiJ_G0015655	-	79	50.270
MGP_CAROLIEiJ_G0018274	Zkscan4	62	46.947	MGP_CAROLIEiJ_G0029329	Zfp94	77	46.947
MGP_CAROLIEiJ_G0018274	Zkscan4	63	51.087	MGP_CAROLIEiJ_G0029321	Zfp112	61	51.087
MGP_CAROLIEiJ_G0018274	Zkscan4	57	50.862	MGP_CAROLIEiJ_G0029322	Zfp235	71	50.862
MGP_CAROLIEiJ_G0018274	Zkscan4	57	55.263	MGP_CAROLIEiJ_G0029324	Zfp111	76	55.263
MGP_CAROLIEiJ_G0018274	Zkscan4	61	54.762	MGP_CAROLIEiJ_G0029326	Zfp108	72	54.762
MGP_CAROLIEiJ_G0018274	Zkscan4	56	51.119	MGP_CAROLIEiJ_G0029327	Zfp93	71	51.311
MGP_CAROLIEiJ_G0018274	Zkscan4	53	45.989	MGP_CAROLIEiJ_G0027176	Zbtb49	66	47.222
MGP_CAROLIEiJ_G0018274	Zkscan4	65	49.597	MGP_CAROLIEiJ_G0024261	Zfp661	59	49.597
MGP_CAROLIEiJ_G0018274	Zkscan4	55	52.071	MGP_CAROLIEiJ_G0031579	Zfp1	60	52.071

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0018274	Zkscan4	99	59.227	ENSCGRG00001006591	Zkscan3	97	56.942	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018274	Zkscan4	99	59.227	ENSCGRG00000001582	Zkscan3	97	56.942	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0018274	Zkscan4	98	59.750	ENSJJAG00000004576	-	96	60.465	Jaculus_jaculus
MGP_CAROLIEiJ_G0018274	Zkscan4	99	59.436	ENSMAUG00000009785	Zkscan3	97	57.143	Mesocricetus_auratus
MGP_CAROLIEiJ_G0018274	Zkscan4	99	55.732	ENSMOCG00000017860	Zkscan3	97	56.614	Microtus_ochrogaster
MGP_CAROLIEiJ_G0018274	Zkscan4	100	90.945	ENSMUSG00000054931	Zkscan4	100	91.535	Mus_musculus
MGP_CAROLIEiJ_G0018274	Zkscan4	99	56.147	ENSMUSG00000021327	Zkscan3	97	71.338	Mus_musculus
MGP_CAROLIEiJ_G0018274	Zkscan4	99	89.861	MGP_PahariEiJ_G0019324	Zkscan4	99	90.656	Mus_pahari
MGP_CAROLIEiJ_G0018274	Zkscan4	100	91.142	MGP_SPRETEiJ_G0019129	Zkscan4	100	91.732	Mus_spretus
MGP_CAROLIEiJ_G0018274	Zkscan4	99	59.158	ENSPCAG00000000195	ZKSCAN4	99	59.158	Procavia_capensis
MGP_CAROLIEiJ_G0018274	Zkscan4	99	53.229	ENSSSCG00000001204	ZKSCAN4	100	59.341	Sus_scrofa
MGP_CAROLIEiJ_G0018274	Zkscan4	72	59.137	ENSTTRG00000015632	-	99	59.898	Tursiops_truncatus