EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: MGP_CAROLIEiJ_G0018441 (Gene tree)
Gene ID: 110308495
Gene Symbol: Snrnp48
Alias: 1110050F08Rik|6530403A03Rik
Full Name: small nuclear ribonucleoprotein 48 (U11/U12)
Gene Type: protein_coding
Species: Mus_caroli
Status: putative
Strand: Plus strand
Length: 24021 bases
Position: chr13:33560236-33584256
Accession: 1915047
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
MGP_CAROLIEiJ_P0034135	zf-U11-48K	PF05253.12	2.8e-10	1	1
MGP_CAROLIEiJ_P0034134	zf-U11-48K	PF05253.12	3.7e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
MGP_CAROLIEiJ_T0034135	-	847	-	MGP_CAROLIEiJ_P0034135	274 (aa)	-	-
MGP_CAROLIEiJ_T0034134	-	1933	-	MGP_CAROLIEiJ_P0034134	337 (aa)	-	-

Gene Model

Click here to download MGP_CAROLIEiJ_G0018441's gene model file

Protein-Protein Interaction (PPI)

Clik here to download MGP_CAROLIEiJ_G0018441's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.726	ENSG00000168566	SNRNP48	100	87.611	Homo_sapiens
MGP_CAROLIEiJ_G0018441	Snrnp48	82	47.535	ENSAPOG00000021430	snrnp48	96	43.440	Acanthochromis_polyacanthus
MGP_CAROLIEiJ_G0018441	Snrnp48	99	84.726	ENSAMEG00000017349	SNRNP48	100	84.726	Ailuropoda_melanoleuca
MGP_CAROLIEiJ_G0018441	Snrnp48	89	44.371	ENSACIG00000002032	snrnp48	96	41.667	Amphilophus_citrinellus
MGP_CAROLIEiJ_G0018441	Snrnp48	82	47.535	ENSAOCG00000010562	snrnp48	96	43.804	Amphiprion_ocellaris
MGP_CAROLIEiJ_G0018441	Snrnp48	82	47.518	ENSAPEG00000003231	snrnp48	96	43.768	Amphiprion_percula
MGP_CAROLIEiJ_G0018441	Snrnp48	77	48.897	ENSATEG00000020210	snrnp48	81	48.571	Anabas_testudineus
MGP_CAROLIEiJ_G0018441	Snrnp48	83	64.828	ENSACAG00000002811	SNRNP48	90	64.828	Anolis_carolinensis
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.431	ENSANAG00000033538	SNRNP48	100	87.316	Aotus_nancymaae
MGP_CAROLIEiJ_G0018441	Snrnp48	93	45.963	ENSAMXG00000015309	snrnp48	97	44.543	Astyanax_mexicanus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	81.765	ENSBTAG00000001123	SNRNP48	100	82.353	Bos_taurus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSCJAG00000021330	SNRNP48	100	87.906	Callithrix_jacchus
MGP_CAROLIEiJ_G0018441	Snrnp48	99	86.607	ENSCAFG00000009574	SNRNP48	83	86.350	Canis_familiaris
MGP_CAROLIEiJ_G0018441	Snrnp48	99	86.647	ENSCAFG00020013203	SNRNP48	99	86.647	Canis_lupus_dingo
MGP_CAROLIEiJ_G0018441	Snrnp48	100	83.529	ENSCHIG00000015216	SNRNP48	100	84.118	Capra_hircus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.136	ENSTSYG00000000698	SNRNP48	100	87.021	Carlito_syrichta
MGP_CAROLIEiJ_G0018441	Snrnp48	91	83.062	ENSCAPG00000006768	SNRNP48	100	83.062	Cavia_aperea
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.136	ENSCPOG00000007910	SNRNP48	100	86.136	Cavia_porcellus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	85.841	ENSCCAG00000035652	SNRNP48	100	86.726	Cebus_capucinus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.136	ENSCATG00000033947	SNRNP48	100	87.021	Cercocebus_atys
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.431	ENSCLAG00000003765	SNRNP48	100	87.316	Chinchilla_lanigera
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.726	ENSCSAG00000007409	SNRNP48	100	87.611	Chlorocebus_sabaeus
MGP_CAROLIEiJ_G0018441	Snrnp48	84	63.123	ENSCPBG00000019146	SNRNP48	91	63.123	Chrysemys_picta_bellii
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.726	ENSCANG00000030017	SNRNP48	100	87.611	Colobus_angolensis_palliatus
MGP_CAROLIEiJ_G0018441	Snrnp48	99	73.874	ENSCGRG00001008805	-	95	72.673	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018441	Snrnp48	100	94.065	ENSCGRG00001001076	-	100	94.065	Cricetulus_griseus_chok1gshd
MGP_CAROLIEiJ_G0018441	Snrnp48	100	94.065	ENSCGRG00000007781	Snrnp48	100	94.065	Cricetulus_griseus_crigri
MGP_CAROLIEiJ_G0018441	Snrnp48	75	48.438	ENSCSEG00000000722	snrnp48	95	41.176	Cynoglossus_semilaevis
MGP_CAROLIEiJ_G0018441	Snrnp48	96	44.910	ENSCVAG00000019829	snrnp48	66	49.242	Cyprinodon_variegatus
MGP_CAROLIEiJ_G0018441	Snrnp48	82	45.070	ENSDARG00000039989	snrnp48	96	42.687	Danio_rerio
MGP_CAROLIEiJ_G0018441	Snrnp48	99	86.269	ENSDNOG00000014978	SNRNP48	99	86.269	Dasypus_novemcinctus
MGP_CAROLIEiJ_G0018441	Snrnp48	99	86.431	ENSDORG00000015140	Snrnp48	99	86.431	Dipodomys_ordii
MGP_CAROLIEiJ_G0018441	Snrnp48	68	35.233	ENSEBUG00000016376	-	89	34.259	Eptatretus_burgeri
MGP_CAROLIEiJ_G0018441	Snrnp48	99	87.574	ENSEASG00005012021	SNRNP48	99	87.574	Equus_asinus_asinus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	88.201	ENSECAG00000026937	SNRNP48	100	88.201	Equus_caballus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	80.000	ENSEEUG00000015437	SNRNP48	99	66.667	Erinaceus_europaeus
MGP_CAROLIEiJ_G0018441	Snrnp48	88	47.386	ENSELUG00000009766	snrnp48	78	48.239	Esox_lucius
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.611	ENSFCAG00000018853	SNRNP48	100	87.611	Felis_catus
MGP_CAROLIEiJ_G0018441	Snrnp48	83	63.014	ENSFALG00000007797	SNRNP48	93	63.699	Ficedula_albicollis
MGP_CAROLIEiJ_G0018441	Snrnp48	99	84.024	ENSFDAG00000009231	SNRNP48	99	86.095	Fukomys_damarensis
MGP_CAROLIEiJ_G0018441	Snrnp48	59	55.941	ENSFHEG00000014647	snrnp48	97	46.333	Fundulus_heteroclitus
MGP_CAROLIEiJ_G0018441	Snrnp48	73	47.581	ENSGMOG00000018599	-	77	47.638	Gadus_morhua
MGP_CAROLIEiJ_G0018441	Snrnp48	78	64.469	ENSGALG00000013005	SNRNP48	92	64.469	Gallus_gallus
MGP_CAROLIEiJ_G0018441	Snrnp48	95	41.964	ENSGAFG00000021639	snrnp48	94	43.529	Gambusia_affinis
MGP_CAROLIEiJ_G0018441	Snrnp48	74	49.004	ENSGACG00000017756	-	96	42.486	Gasterosteus_aculeatus
MGP_CAROLIEiJ_G0018441	Snrnp48	84	62.000	ENSGAGG00000000865	SNRNP48	97	62.000	Gopherus_agassizii
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.726	ENSGGOG00000013220	SNRNP48	100	87.611	Gorilla_gorilla
MGP_CAROLIEiJ_G0018441	Snrnp48	75	47.656	ENSHBUG00000017066	snrnp48	95	42.105	Haplochromis_burtoni
MGP_CAROLIEiJ_G0018441	Snrnp48	99	86.095	ENSHGLG00000015241	SNRNP48	99	86.982	Heterocephalus_glaber_female
MGP_CAROLIEiJ_G0018441	Snrnp48	99	86.095	ENSHGLG00100010027	SNRNP48	99	86.982	Heterocephalus_glaber_male
MGP_CAROLIEiJ_G0018441	Snrnp48	72	47.154	ENSHCOG00000014066	snrnp48	92	41.399	Hippocampus_comes
MGP_CAROLIEiJ_G0018441	Snrnp48	100	89.971	ENSSTOG00000014635	SNRNP48	100	90.855	Ictidomys_tridecemlineatus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.431	ENSJJAG00000011495	Snrnp48	100	86.431	Jaculus_jaculus
MGP_CAROLIEiJ_G0018441	Snrnp48	91	44.805	ENSKMAG00000016514	snrnp48	94	42.353	Kryptolebias_marmoratus
MGP_CAROLIEiJ_G0018441	Snrnp48	75	48.235	ENSLBEG00000026249	snrnp48	95	42.857	Labrus_bergylta
MGP_CAROLIEiJ_G0018441	Snrnp48	98	52.537	ENSLACG00000003958	SNRNP48	99	51.603	Latimeria_chalumnae
MGP_CAROLIEiJ_G0018441	Snrnp48	84	51.557	ENSLOCG00000004187	snrnp48	95	49.258	Lepisosteus_oculatus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	83.776	ENSLAFG00000011152	SNRNP48	100	83.776	Loxodonta_africana
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSMFAG00000045216	SNRNP48	100	87.906	Macaca_fascicularis
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSMMUG00000014785	SNRNP48	100	87.906	Macaca_mulatta
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSMNEG00000042269	SNRNP48	100	87.906	Macaca_nemestrina
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSMLEG00000034004	SNRNP48	100	87.906	Mandrillus_leucophaeus
MGP_CAROLIEiJ_G0018441	Snrnp48	75	49.020	ENSMAMG00000018673	snrnp48	83	43.732	Mastacembelus_armatus
MGP_CAROLIEiJ_G0018441	Snrnp48	82	64.286	ENSMGAG00000006037	SNRNP48	99	63.699	Meleagris_gallopavo
MGP_CAROLIEiJ_G0018441	Snrnp48	100	93.769	ENSMAUG00000011944	Snrnp48	100	93.769	Mesocricetus_auratus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSMICG00000012497	SNRNP48	100	87.906	Microcebus_murinus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	94.065	ENSMOCG00000015555	Snrnp48	100	94.065	Microtus_ochrogaster
MGP_CAROLIEiJ_G0018441	Snrnp48	54	52.432	ENSMMOG00000003072	-	58	52.432	Mola_mola
MGP_CAROLIEiJ_G0018441	Snrnp48	99	69.275	ENSMODG00000009996	SNRNP48	93	69.565	Monodelphis_domestica
MGP_CAROLIEiJ_G0018441	Snrnp48	75	49.609	ENSMALG00000005725	snrnp48	95	42.690	Monopterus_albus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	98.516	ENSMUSG00000021431	Snrnp48	100	98.516	Mus_musculus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	97.626	MGP_PahariEiJ_G0019509	Snrnp48	100	97.626	Mus_pahari
MGP_CAROLIEiJ_G0018441	Snrnp48	100	98.220	MGP_SPRETEiJ_G0019321	Snrnp48	100	98.220	Mus_spretus
MGP_CAROLIEiJ_G0018441	Snrnp48	99	90.533	ENSNGAG00000004849	Snrnp48	99	90.533	Nannospalax_galili
MGP_CAROLIEiJ_G0018441	Snrnp48	75	47.266	ENSNBRG00000012127	snrnp48	95	41.813	Neolamprologus_brichardi
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSNLEG00000011667	SNRNP48	100	87.906	Nomascus_leucogenys
MGP_CAROLIEiJ_G0018441	Snrnp48	95	79.257	ENSOPRG00000015471	SNRNP48	100	78.638	Ochotona_princeps
MGP_CAROLIEiJ_G0018441	Snrnp48	96	44.073	ENSONIG00000001520	snrnp48	95	41.311	Oreochromis_niloticus
MGP_CAROLIEiJ_G0018441	Snrnp48	62	59.677	ENSOANG00000019888	-	100	63.462	Ornithorhynchus_anatinus
MGP_CAROLIEiJ_G0018441	Snrnp48	85	87.762	ENSOCUG00000005168	SNRNP48	100	87.500	Oryctolagus_cuniculus
MGP_CAROLIEiJ_G0018441	Snrnp48	89	47.078	ENSORLG00000015654	snrnp48	94	44.509	Oryzias_latipes
MGP_CAROLIEiJ_G0018441	Snrnp48	89	46.429	ENSORLG00020015976	snrnp48	82	44.282	Oryzias_latipes_hni
MGP_CAROLIEiJ_G0018441	Snrnp48	89	47.403	ENSORLG00015022379	snrnp48	81	45.376	Oryzias_latipes_hsok
MGP_CAROLIEiJ_G0018441	Snrnp48	96	43.807	ENSOMEG00000022007	snrnp48	95	43.188	Oryzias_melastigma
MGP_CAROLIEiJ_G0018441	Snrnp48	91	86.557	ENSOGAG00000005275	SNRNP48	96	85.804	Otolemur_garnettii
MGP_CAROLIEiJ_G0018441	Snrnp48	85	83.624	ENSOARG00000017319	SNRNP48	100	83.624	Ovis_aries
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSPPAG00000032873	SNRNP48	100	87.906	Pan_paniscus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.316	ENSPPRG00000004283	SNRNP48	100	87.316	Panthera_pardus
MGP_CAROLIEiJ_G0018441	Snrnp48	85	87.456	ENSPTIG00000013502	SNRNP48	100	87.456	Panthera_tigris_altaica
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSPTRG00000017703	SNRNP48	100	87.906	Pan_troglodytes
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSPANG00000000771	SNRNP48	100	87.906	Papio_anubis
MGP_CAROLIEiJ_G0018441	Snrnp48	94	46.356	ENSPKIG00000013703	snrnp48	67	46.828	Paramormyrops_kingsleyae
MGP_CAROLIEiJ_G0018441	Snrnp48	84	62.791	ENSPSIG00000002213	SNRNP48	94	62.791	Pelodiscus_sinensis
MGP_CAROLIEiJ_G0018441	Snrnp48	74	48.249	ENSPMGG00000008120	snrnp48	90	48.249	Periophthalmus_magnuspinnatus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	94.362	ENSPEMG00000008872	Snrnp48	100	94.362	Peromyscus_maniculatus_bairdii
MGP_CAROLIEiJ_G0018441	Snrnp48	84	47.887	ENSPFOG00000003578	snrnp48	93	44.838	Poecilia_formosa
MGP_CAROLIEiJ_G0018441	Snrnp48	69	49.145	ENSPLAG00000002290	snrnp48	79	49.145	Poecilia_latipinna
MGP_CAROLIEiJ_G0018441	Snrnp48	84	47.183	ENSPMEG00000018033	snrnp48	93	44.248	Poecilia_mexicana
MGP_CAROLIEiJ_G0018441	Snrnp48	74	49.402	ENSPREG00000018541	snrnp48	93	44.248	Poecilia_reticulata
MGP_CAROLIEiJ_G0018441	Snrnp48	100	85.546	ENSPPYG00000016209	SNRNP48	100	86.431	Pongo_abelii
MGP_CAROLIEiJ_G0018441	Snrnp48	74	78.571	ENSPCAG00000011991	SNRNP48	99	68.539	Procavia_capensis
MGP_CAROLIEiJ_G0018441	Snrnp48	100	85.841	ENSPVAG00000002854	SNRNP48	100	85.841	Pteropus_vampyrus
MGP_CAROLIEiJ_G0018441	Snrnp48	75	47.656	ENSPNYG00000015399	snrnp48	90	45.329	Pundamilia_nyererei
MGP_CAROLIEiJ_G0018441	Snrnp48	100	95.549	ENSRNOG00000013756	Snrnp48	100	95.549	Rattus_norvegicus
MGP_CAROLIEiJ_G0018441	Snrnp48	92	87.419	ENSRBIG00000043856	SNRNP48	98	87.419	Rhinopithecus_bieti
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.726	ENSRROG00000043229	SNRNP48	100	87.611	Rhinopithecus_roxellana
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSSBOG00000019486	SNRNP48	100	87.906	Saimiri_boliviensis_boliviensis
MGP_CAROLIEiJ_G0018441	Snrnp48	99	70.201	ENSSHAG00000014483	SNRNP48	100	70.201	Sarcophilus_harrisii
MGP_CAROLIEiJ_G0018441	Snrnp48	74	51.562	ENSSFOG00015006610	snrnp48	70	47.826	Scleropages_formosus
MGP_CAROLIEiJ_G0018441	Snrnp48	85	46.528	ENSSDUG00000014953	snrnp48	92	43.731	Seriola_dumerili
MGP_CAROLIEiJ_G0018441	Snrnp48	85	45.486	ENSSLDG00000005989	snrnp48	92	43.675	Seriola_lalandi_dorsalis
MGP_CAROLIEiJ_G0018441	Snrnp48	84	63.758	ENSSPUG00000006257	SNRNP48	85	65.436	Sphenodon_punctatus
MGP_CAROLIEiJ_G0018441	Snrnp48	96	42.643	ENSSPAG00000006454	snrnp48	93	43.195	Stegastes_partitus
MGP_CAROLIEiJ_G0018441	Snrnp48	83	62.116	ENSTGUG00000007575	SNRNP48	93	62.116	Taeniopygia_guttata
MGP_CAROLIEiJ_G0018441	Snrnp48	74	49.801	ENSTRUG00000007031	snrnp48	92	45.732	Takifugu_rubripes
MGP_CAROLIEiJ_G0018441	Snrnp48	75	46.275	ENSTNIG00000012977	-	75	46.275	Tetraodon_nigroviridis
MGP_CAROLIEiJ_G0018441	Snrnp48	100	81.319	ENSTBEG00000015620	SNRNP48	100	71.893	Tupaia_belangeri
MGP_CAROLIEiJ_G0018441	Snrnp48	100	86.136	ENSTTRG00000016715	SNRNP48	100	86.136	Tursiops_truncatus
MGP_CAROLIEiJ_G0018441	Snrnp48	100	87.021	ENSUAMG00000003690	SNRNP48	100	87.906	Ursus_americanus
MGP_CAROLIEiJ_G0018441	Snrnp48	85	82.927	ENSVPAG00000003557	SNRNP48	100	82.927	Vicugna_pacos
MGP_CAROLIEiJ_G0018441	Snrnp48	99	86.944	ENSVVUG00000004996	SNRNP48	99	86.944	Vulpes_vulpes
MGP_CAROLIEiJ_G0018441	Snrnp48	86	53.512	ENSXETG00000020447	snrnp48	97	51.929	Xenopus_tropicalis
MGP_CAROLIEiJ_G0018441	Snrnp48	69	48.511	ENSXCOG00000004478	snrnp48	71	48.511	Xiphophorus_couchianus
MGP_CAROLIEiJ_G0018441	Snrnp48	84	47.535	ENSXMAG00000013595	snrnp48	93	44.838	Xiphophorus_maculatus